Contig 008440:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF007M14+                                                           AAGTCCAAATA
                      ____________________________________________________________
consensus                                                              AAGTCCAAATA
 
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rJMSF011E12+                                 AGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAA
rJMSF007M14+          CGATGAAATTGCAGCGTTTTATAAGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAA
                      ____________________________________________________________
consensus             CGATGAAATTGCAGCGTTTTATAAGGGAAAGGATATAGGCTTTATGTTGGGGGATGTCAA
 
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rJMSF011E12+          GTCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTT
rJMSF007M14+          GTCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTT
                      ____________________________________________________________
consensus             GTCCAGTGGTGGTGTGTTTCAGTACTTTAAAGTGCACGAGGATCAGGCACCTCTTGTCTT
 
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rJMSF011E12+          AGGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACNTGATCAAATTGC
rJMSF007M14+          AGGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACCTGATCAAATTGC
                      ____________________________________________________________
consensus             AGGACAGACAAATGAGGGCGAAAAATATCTCAAGCCAAATGTGGAACCTGATCAAATTGC
 
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rJMSF011E12+          AACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCTAT
rJMSF007M14+          AACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCCAT
                      ____________________________________________________________
consensus             AACTTGGGTAAAGGACTTCAAGGACGGTAAGTTGAAGCCATTTCTAAGCTCAGAGCCTAT
 
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rJMSF011E12+          TCCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGT
rJMSF007M14+          TCCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGT
                      ____________________________________________________________
consensus             TCCCGAGAACAACAGCCAACCAGTGAAGGTTGTTGTCACTGATAGCCTTGAGGAAATGGT
 
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rJMSF011E12+          ATTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAA
rJMSF007M14+          ATTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAA
                      ____________________________________________________________
consensus             ATTTAACTCAGGAAAGAATGTTCTACTGGAATTTTATGCTCCTTGGTGTGGCCACTGCAA
 
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rJMSF011E12+          GCAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCAT
rJMSF007M14+          GCAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCAT
                      ____________________________________________________________
consensus             GCAGCTAGCTCCAATCTTGGATGAAGTCGCAATCTCACTTGAGAATGATCCCAATGTCAT
 
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rJMSF011E12+          GATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGG
rJMSF007M14+          GATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGG
                      ____________________________________________________________
consensus             GATTGCAAAACTAGATGGAACCGCGAATGATATCCCGAAAGGGAAGTTTGAAGTTAAAGG
 
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rJMSF011E12+          ATACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAG
rJMSF007M14+          ATACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAG
                      ____________________________________________________________
consensus             ATACCCAACTCTGTACTTCAAATCTGCATCTGGTAACCTGTTGCAATATGAAGGCAATAG
 
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rJMSF011E12+          AACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGG
rJMSF007M14+          AACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGG
                      ____________________________________________________________
consensus             AACAAAGGAGGACATTATTGACTTTATCCACAAGAACAGGGACAAGACTATCCAATCAGG
 
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rJMSF011E12+          CTCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAG
rJMSF007M14+          CTCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAG
                      ____________________________________________________________
consensus             CTCTGCAACATCTGAAGAACCATCCAAGGAGGAGCTGTAAGAAGGTTTGAAGATTTTGAG
 
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rJMSF011E12+          GCTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGT
rJMSF007M14+          GCTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGT
                      ____________________________________________________________
consensus             GCTAGTTCGAGTTTGTGTCTGTTGCGGAACTGAATAAAATGCTAGGCATGTAACACTTGT
 
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rJMSF011E12+          AGCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTAG                      
rJMSF007M14+          AGCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTAGCTGTTAGCCCCTACCTCGTACC
                      ____________________________________________________________
consensus             AGCATTTCCAATCTTGGGGTTGGGGTGTTTTCAGTTAGCTGTTAGCCCCTACCTCGTACC