Contig 008434:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS159D11Sequence527008434 (7)ref|XP_009596046.1|6e-62PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF001C04Sequence354003539 (8)ref|XP_009761471.1|1e-38PREDICTED: chloride channel protein CLC-b-like [Nicotiana sylvestris]786008434 (7)ref|XP_009596046.1|8e-103PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF002L02Sequence426003539 (8)gb|KDO43322.1|2e-55hypothetical protein CISIN_1g0039661mg, partial [Citrus sinensis]366008434 (7)
JMSF005L05Sequence417003539 (8)ref|XP_008379123.1|7e-47PREDICTED: chloride channel protein CLC-b isoform X1 [Malus domestica]534008434 (7)ref|XP_009596046.1|7e-62PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF007F01Sequence428003539 (8)gb|KDO43322.1|2e-55hypothetical protein CISIN_1g0039661mg, partial [Citrus sinensis]812008434 (7)ref|XP_009596046.1|1e-58PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF031H16Sequence720008434 (7)ref|XP_009596046.1|6e-40PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF031I20Sequence625003539 (8)emb|CDP16685.1|7e-83unnamed protein product [Coffea canephora]751008434 (7)ref|XP_009596046.1|2e-94PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF031I20+ C
rJMSF001C04+ AANGGCTTACCCTTCCTGGATGCACACCCTGAGCC
                      ____________________________________________________________
consensus AANGGCTTACCCTTCCTGGATGCACACCCTGAGCC
 
. : . : . : . : . : . :
rJMSF031I20+ ATGGATGAGAAACATCACAGTTGGGGAGCTGGCTGATGTGAAGCCACCGGTGGTTACACT
rJMSF001C04+ ATGGATGAGAAACATCACAGTTGGGGAGCTGGCTGATGTGAAGCCACCGGTGGTTACACT
                      ____________________________________________________________
consensus ATGGATGAGAAACATCACAGTTGGGGAGCTGGCTGATGTGAAGCCACCGGTGGTTACACT
 
. : . : . : . : . : . :
rJMSF031I20+ GAGAGGAATTGAGAAGGTGGGGCGCATTGTGGAGGTCCTCAAGAACACGACACACAATGG
rJMSF001C04+ GAGAGGAATTGAGAAGGTGGGGCGCATTGTGGAGGTCCTCAAGAACACGACACACAATGG
                      ____________________________________________________________
consensus GAGAGGAATTGAGAAGGTGGGGCGCATTGTGGAGGTCCTCAAGAACACGACACACAATGG
 
. : . : . : . : . : . :
rJMSF031I20+ GTTCCCGGTTGTAGATGAAGGGGTGGTGCCTCCTAGAACAGCGCTGCCGATTGGGGCAAC
rJMSF001C04+ GTTCCCGGTTGTAGATGAAGGGGTGGTGCCTCCTAGAACAGCGCTGCCGATTGGGGCAAC
                      ____________________________________________________________
consensus GTTCCCGGTTGTAGATGAAGGGGTGGTGCCTCCTAGAACAGCGCTGCCGATTGGGGCAAC
 
. : . : . : . : . : . :
rJMSF031I20+ TGAACTTCATGGACTAGTCCTGAGGACTCACCTTCTGCTGGTGCTGAAAAAGAAGTACTT
rJMSF005L05+ CTGCTGGTGCTGAAAAAGAAGTACTT
rJMSF001C04+ TGAACTTCATGGACTAGTCCTGAGGACTCACCTTCTGCTGGTGCTGAAAAAGAAGTACTT
                      ____________________________________________________________
consensus TGAACTTCATGGACTAGTCCTGAGGACTCACCTTCTGCTGGTGCTGAAAAAGAAGTACTT
 
. : . : . : . : . : . :
rJMSF031I20+ CATGAGTGAAAGGAGGAGGACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
rJMSF005L05+ CATGAGTGAAAGGAGGAGGACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
rJMSF001C04+ CATGAGTGAAAGGAGGAGGACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
JMFS159D11- ACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
rJMSF007F01+ GGCAGAAGTGAGAGAGAAGTTTNCCTGGATAGA
                      ____________________________________________________________
consensus CATGAGTGAAAGGAGGAGGACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
 
. : . : . : . : . : . :
rJMSF031I20+ CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
rJMSF005L05+ CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
rJMSF001C04+ CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
JMFS159D11- CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
rJMSF031H16+ GGAGAT
rJMSF007F01+ CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
                      ____________________________________________________________
consensus CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
 
. : . : . : . : . : . :
rJMSF031I20+ GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
rJMSF005L05+ GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
rJMSF001C04+ GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
JMFS159D11- GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
rJMSF031H16+ GTATGTGGACTTGCATCCTCTTACCAACACAACGCCATATACAGTAGTCGAAAGCTTGTC
rJMSF007F01+ GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
                      ____________________________________________________________
consensus GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
 
. : . : . : . : . : . :
rJMSF031I20+ AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
rJMSF005L05+ AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
rJMSF001C04+ AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
JMFS159D11- AGTCGCCAAGGCCTTGGTGCTGGTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
rJMSF031H16+ AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
rJMSF007F01+ AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
                      ____________________________________________________________
consensus AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
 
. : . : . : . : . : . :
rJMSF031I20+ CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
rJMSF005L05+ CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
rJMSF001C04+ CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
JMFS159D11- CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
rJMSF031H16+ CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
rJMSF007F01+ CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
                      ____________________________________________________________
consensus CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
 
. : . : . : . : . : . :
rJMSF031I20+ GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
rJMSF005L05+ GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
rJMSF001C04+ GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
JMFS159D11- GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
rJMSF031H16+ GGCACACAACATTNTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
rJMSF007F01+ GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
                      ____________________________________________________________
consensus GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
 
. : . : . : . : . : . :
rJMSF031I20+ TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
rJMSF005L05+ TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
rJMSF001C04+ TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
JMFS159D11- TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
rJMSF031H16+ TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
rJMSF007F01+ TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
                      ____________________________________________________________
consensus TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
 
. : . : . : . : . : . :
rJMSF031I20+ TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
rJMSF005L05+ TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
rJMSF001C04+ TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
JMFS159D11- TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
rJMSF031H16+ TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
rJMSF002L02+ TCATTCTTTCTCAGAGNTCACAAGCTTNGCTTTTATCATAAA
rJMSF007F01+ TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
                      ____________________________________________________________
consensus TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
 
. : . : . : . : . : . :
rJMSF031I20+ CTTTGAGTGTTACACACTGTCAAACAATAA
rJMSF005L05+ CTTTGAGTGTTACACACTGTCAAACAAT
rJMSF001C04+ CTTTGAGTGTTACACACTGTCAAACAATAAC
JMFS159D11- CTTTGAGTGTTACACACTGTCAAACAATA-ACACATTTCATAAACATATGCTGCCTGCTG
rJMSF031H16+ CTTTGAGTGTTACACACTGTCAAACAATA-ACACATTTCATAAACATATGCTGCCTGCTG
rJMSF002L02+ CTNGGAGTGTTACACACTGTCAANCAATAGACACATNTCATAAACATATGCTGCCTGCTG
rJMSF007F01+ CTTTGAGTGTTACACACTGTCAAACAATA-ACACATTTCATAAACATATGCTGCCTGCTG
                      ____________________________________________________________
consensus CTTTGAGTGTTACACACTGTCAAACAATA-ACACATTTCATAAACATATGCTGCCTGCTG
 
. : . : . : . : . : . :
JMFS159D11- GGTTG
rJMSF031H16+ GGTTGTCTTTGGAAATCTTCCCAACCTAAACCATCCATTTCTGCTGCTGCGTGTCATACC
rJMSF002L02+ GGTTGTCTNTGGAAATCTTCCCAACNTAAACCATCCATTTCTGCTGCTGCGTGTCATACC
rJMSF007F01+ GGTTGTCTTTGGAAATCTTCCCAACCTAAACCATCCATTTCTGCTGCTGCGTGTCATACC
                      ____________________________________________________________
consensus GGTTGTCTTTGGAAATCTTCCCAACCTAAACCATCCATTTCTGCTGCTGCGTGTCATACC
 
. : . : . : . : . : . :
rJMSF031H16+ TCTTTTCCTTGCAATTAAATAACACTTGTCTATTTCCTCACCTCTACTTTAAAGCTTCTC
rJMSF002L02+ TCTTTTCCTCGCAANTAAATNACACTNGTNTANTTCCTCACCTNTACTNTAAAGCTTGTC
rJMSF007F01+ TCTTTTCCTTGCAATTAAATAACACTTGTCTATTTCCTCACCTCTACTTTAAAGCTTCTC
                      ____________________________________________________________
consensus TCTTTTCCTTGCAATTAAATAACACTTGTCTATTTCCTCACCTCTACTTTAAAGCTTCTC
 
. : . : . : . : . : . :
rJMSF031H16+ ACACATTGTAACAAAAAAATGCTCATGAATACCATTTAGTTGTTGAAGAATGCAAAGAAA
rJMSF002L02+ NCACANTGTAACAAAAAAATGCTCANGANTACCANTTAGTTGNTGAAGAATGCAAAGAAA
rJMSF007F01+ ACACATTGTAACAAAAAAATGCTCATGAATACCATTTAGTTGTTGAAGAATGCAAAGAAA
                      ____________________________________________________________
consensus ACACATTGTAACAAAAAAATGCTCATGAATACCATTTAGTTGTTGAAGAATGCAAAGAAA
 
. : . : . : . : . : . :
rJMSF031H16+ TGGAGGAGGATGCAATATTATCAAGTGTCACAACTCCACTCTGTTTTGAGGGATGAATCA
rJMSF002L02+ TGGAGGAGGATGCAATATTATCAAGTGTCACAACTCCACTCTGTTTTGAGGGATGAATCA
rJMSF007F01+ TGGAGGAGGATGCAATATTATCAAGTGTCACAACTCCACTCTGTTTTGAGGGATGAATCA
                      ____________________________________________________________
consensus TGGAGGAGGATGCAATATTATCAAGTGTCACAACTCCACTCTGTTTTGAGGGATGAATCA
 
. : . : . : . : . : . :
rJMSF031H16+ AAT
rJMSF002L02+ AATTTTCACTCCCTCAAA
rJMSF007F01+ AATTTTCAATCCCTCAAAAGTGTACACATAATAAATATTATTTCAGGAATTAATATGATG
                      ____________________________________________________________
consensus AATTTTCACTCCCTCAAAAGTGTACACATAATAAATATTATTTCAGGAATTAATATGATG