Contig 008434:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS159D11Sequence527008434 (7)ref|XP_009596046.1|6e-62PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF001C04Sequence354003539 (8)ref|XP_009761471.1|1e-38PREDICTED: chloride channel protein CLC-b-like [Nicotiana sylvestris]786008434 (7)ref|XP_009596046.1|8e-103PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF002L02Sequence426003539 (8)gb|KDO43322.1|2e-55hypothetical protein CISIN_1g0039661mg, partial [Citrus sinensis]366008434 (7)
JMSF005L05Sequence417003539 (8)ref|XP_008379123.1|7e-47PREDICTED: chloride channel protein CLC-b isoform X1 [Malus domestica]534008434 (7)ref|XP_009596046.1|7e-62PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF007F01Sequence428003539 (8)gb|KDO43322.1|2e-55hypothetical protein CISIN_1g0039661mg, partial [Citrus sinensis]812008434 (7)ref|XP_009596046.1|1e-58PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF031H16Sequence720008434 (7)ref|XP_009596046.1|6e-40PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMSF031I20Sequence625003539 (8)emb|CDP16685.1|7e-83unnamed protein product [Coffea canephora]751008434 (7)ref|XP_009596046.1|2e-94PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF031I20+                                                                     C
rJMSF001C04+                                   AANGGCTTACCCTTCCTGGATGCACACCCTGAGCC
                      ____________________________________________________________
consensus                                      AANGGCTTACCCTTCCTGGATGCACACCCTGAGCC
 
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rJMSF031I20+          ATGGATGAGAAACATCACAGTTGGGGAGCTGGCTGATGTGAAGCCACCGGTGGTTACACT
rJMSF001C04+          ATGGATGAGAAACATCACAGTTGGGGAGCTGGCTGATGTGAAGCCACCGGTGGTTACACT
                      ____________________________________________________________
consensus             ATGGATGAGAAACATCACAGTTGGGGAGCTGGCTGATGTGAAGCCACCGGTGGTTACACT
 
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rJMSF031I20+          GAGAGGAATTGAGAAGGTGGGGCGCATTGTGGAGGTCCTCAAGAACACGACACACAATGG
rJMSF001C04+          GAGAGGAATTGAGAAGGTGGGGCGCATTGTGGAGGTCCTCAAGAACACGACACACAATGG
                      ____________________________________________________________
consensus             GAGAGGAATTGAGAAGGTGGGGCGCATTGTGGAGGTCCTCAAGAACACGACACACAATGG
 
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rJMSF031I20+          GTTCCCGGTTGTAGATGAAGGGGTGGTGCCTCCTAGAACAGCGCTGCCGATTGGGGCAAC
rJMSF001C04+          GTTCCCGGTTGTAGATGAAGGGGTGGTGCCTCCTAGAACAGCGCTGCCGATTGGGGCAAC
                      ____________________________________________________________
consensus             GTTCCCGGTTGTAGATGAAGGGGTGGTGCCTCCTAGAACAGCGCTGCCGATTGGGGCAAC
 
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rJMSF031I20+          TGAACTTCATGGACTAGTCCTGAGGACTCACCTTCTGCTGGTGCTGAAAAAGAAGTACTT
rJMSF005L05+                                            CTGCTGGTGCTGAAAAAGAAGTACTT
rJMSF001C04+          TGAACTTCATGGACTAGTCCTGAGGACTCACCTTCTGCTGGTGCTGAAAAAGAAGTACTT
                      ____________________________________________________________
consensus             TGAACTTCATGGACTAGTCCTGAGGACTCACCTTCTGCTGGTGCTGAAAAAGAAGTACTT
 
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rJMSF031I20+          CATGAGTGAAAGGAGGAGGACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
rJMSF005L05+          CATGAGTGAAAGGAGGAGGACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
rJMSF001C04+          CATGAGTGAAAGGAGGAGGACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
JMFS159D11-                              ACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
rJMSF007F01+                                     GGCAGAAGTGAGAGAGAAGTTTNCCTGGATAGA
                      ____________________________________________________________
consensus             CATGAGTGAAAGGAGGAGGACAGAGGAGGCAGAAGTGAGAGAGAAGTTTACCTGGATAGA
 
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rJMSF031I20+          CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
rJMSF005L05+          CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
rJMSF001C04+          CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
JMFS159D11-           CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
rJMSF031H16+                                                                GGAGAT
rJMSF007F01+          CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
                      ____________________________________________________________
consensus             CTTGGCAGAGAGATGGGGGAAGATTGAAGATGTGGCTGTAACAAAGGATGAAATGGAGAT
 
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rJMSF031I20+          GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
rJMSF005L05+          GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
rJMSF001C04+          GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
JMFS159D11-           GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
rJMSF031H16+          GTATGTGGACTTGCATCCTCTTACCAACACAACGCCATATACAGTAGTCGAAAGCTTGTC
rJMSF007F01+          GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
                      ____________________________________________________________
consensus             GTATGTTGACTTGCATCCTCTTACCAACACAACACCATATACAGTAGTCGAAAGCTTGTC
 
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rJMSF031I20+          AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
rJMSF005L05+          AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
rJMSF001C04+          AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
JMFS159D11-           AGTCGCCAAGGCCTTGGTGCTGGTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
rJMSF031H16+          AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
rJMSF007F01+          AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
                      ____________________________________________________________
consensus             AGTCGCCAAGGCCTTGTTGCTGTTTAGGCAGGTGGGGCTCCGCCACATGATCATTCTACC
 
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rJMSF031I20+          CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
rJMSF005L05+          CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
rJMSF001C04+          CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
JMFS159D11-           CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
rJMSF031H16+          CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
rJMSF007F01+          CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
                      ____________________________________________________________
consensus             CAAGTATCAAGCAGCAGGGGTATCTCCAGTTGTTGGAATCTTGACCAGGCAAGACCTGAG
 
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rJMSF031I20+          GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
rJMSF005L05+          GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
rJMSF001C04+          GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
JMFS159D11-           GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
rJMSF031H16+          GGCACACAACATTNTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
rJMSF007F01+          GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
                      ____________________________________________________________
consensus             GGCACACAACATTCTGAGTGTGTTCCCTCATCTAGCAAACTCAAAGGGAAGTAAAAAGGG
 
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rJMSF031I20+          TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
rJMSF005L05+          TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
rJMSF001C04+          TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
JMFS159D11-           TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
rJMSF031H16+          TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
rJMSF007F01+          TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
                      ____________________________________________________________
consensus             TAACTAACCCTTCCTCTTCTCTCCACTCTCATCTTCCATTCACCATTTAATACGTACTAC
 
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rJMSF031I20+          TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
rJMSF005L05+          TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
rJMSF001C04+          TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
JMFS159D11-           TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
rJMSF031H16+          TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
rJMSF002L02+                            TCATTCTTTCTCAGAGNTCACAAGCTTNGCTTTTATCATAAA
rJMSF007F01+          TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
                      ____________________________________________________________
consensus             TCTTCTTTTTCCAATTTTTCATTCTTTCTCAGAGATCACAAGCTTTGCTTTTATCATAAA
 
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rJMSF031I20+          CTTTGAGTGTTACACACTGTCAAACAATAA                              
rJMSF005L05+          CTTTGAGTGTTACACACTGTCAAACAAT                                
rJMSF001C04+          CTTTGAGTGTTACACACTGTCAAACAATAAC                             
JMFS159D11-           CTTTGAGTGTTACACACTGTCAAACAATA-ACACATTTCATAAACATATGCTGCCTGCTG
rJMSF031H16+          CTTTGAGTGTTACACACTGTCAAACAATA-ACACATTTCATAAACATATGCTGCCTGCTG
rJMSF002L02+          CTNGGAGTGTTACACACTGTCAANCAATAGACACATNTCATAAACATATGCTGCCTGCTG
rJMSF007F01+          CTTTGAGTGTTACACACTGTCAAACAATA-ACACATTTCATAAACATATGCTGCCTGCTG
                      ____________________________________________________________
consensus             CTTTGAGTGTTACACACTGTCAAACAATA-ACACATTTCATAAACATATGCTGCCTGCTG
 
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JMFS159D11-           GGTTG                                                       
rJMSF031H16+          GGTTGTCTTTGGAAATCTTCCCAACCTAAACCATCCATTTCTGCTGCTGCGTGTCATACC
rJMSF002L02+          GGTTGTCTNTGGAAATCTTCCCAACNTAAACCATCCATTTCTGCTGCTGCGTGTCATACC
rJMSF007F01+          GGTTGTCTTTGGAAATCTTCCCAACCTAAACCATCCATTTCTGCTGCTGCGTGTCATACC
                      ____________________________________________________________
consensus             GGTTGTCTTTGGAAATCTTCCCAACCTAAACCATCCATTTCTGCTGCTGCGTGTCATACC
 
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rJMSF031H16+          TCTTTTCCTTGCAATTAAATAACACTTGTCTATTTCCTCACCTCTACTTTAAAGCTTCTC
rJMSF002L02+          TCTTTTCCTCGCAANTAAATNACACTNGTNTANTTCCTCACCTNTACTNTAAAGCTTGTC
rJMSF007F01+          TCTTTTCCTTGCAATTAAATAACACTTGTCTATTTCCTCACCTCTACTTTAAAGCTTCTC
                      ____________________________________________________________
consensus             TCTTTTCCTTGCAATTAAATAACACTTGTCTATTTCCTCACCTCTACTTTAAAGCTTCTC
 
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rJMSF031H16+          ACACATTGTAACAAAAAAATGCTCATGAATACCATTTAGTTGTTGAAGAATGCAAAGAAA
rJMSF002L02+          NCACANTGTAACAAAAAAATGCTCANGANTACCANTTAGTTGNTGAAGAATGCAAAGAAA
rJMSF007F01+          ACACATTGTAACAAAAAAATGCTCATGAATACCATTTAGTTGTTGAAGAATGCAAAGAAA
                      ____________________________________________________________
consensus             ACACATTGTAACAAAAAAATGCTCATGAATACCATTTAGTTGTTGAAGAATGCAAAGAAA
 
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rJMSF031H16+          TGGAGGAGGATGCAATATTATCAAGTGTCACAACTCCACTCTGTTTTGAGGGATGAATCA
rJMSF002L02+          TGGAGGAGGATGCAATATTATCAAGTGTCACAACTCCACTCTGTTTTGAGGGATGAATCA
rJMSF007F01+          TGGAGGAGGATGCAATATTATCAAGTGTCACAACTCCACTCTGTTTTGAGGGATGAATCA
                      ____________________________________________________________
consensus             TGGAGGAGGATGCAATATTATCAAGTGTCACAACTCCACTCTGTTTTGAGGGATGAATCA
 
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rJMSF031H16+          AAT                                                         
rJMSF002L02+          AATTTTCACTCCCTCAAA                                          
rJMSF007F01+          AATTTTCAATCCCTCAAAAGTGTACACATAATAAATATTATTTCAGGAATTAATATGATG
                      ____________________________________________________________
consensus             AATTTTCACTCCCTCAAAAGTGTACACATAATAAATATTATTTCAGGAATTAATATGATG