Contig 008430:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF006L05-                                         GGTTGCGGTGTTAGATCAAGCCCAGCATCT
rJMSF006L05+                                        GGTTGCGGTGTTAGATCAAGCCCAGCATCT
                      ____________________________________________________________
consensus                                           GGTTGCGGTGTTAGATCAAGCCCAGCATCT
 
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JMSF006L05-           CCCATTAACAAGGCAGCGCTGAAACGAGTACTGGGAATTGAATAGCTCTGCAAGCATCAA
rJMSF006K05+                         GCGCTGAAACGAGTACTGGGAATTGNATAGCTCTGCAAGCATCAA
rJMSF006L05+          CCCATTAACAAGGCAGCGCTGAAACGAGTACTGGGAATTGAATAGCTCTGCAAGCATCAA
                      ____________________________________________________________
consensus             CCCATTAACAAGGCAGCGCTGAAACGAGTACTGGGAATTGAATAGCTCTGCAAGCATCAA
 
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JMSF006L05-           ACAGAAATTTCATCACAGGTGTAGCATTTGGGGGTGTTAAAACTGGACACTTGATTGACT
rJMSF006K05+          ACAGAAATTTCATCACAGGNGTAGCATTTGGGGGTGTTAAAACTGGACNCTTGATTGACT
rJMSF006L05+          ACAGAAATTTCATCACAGGTGTAGCATTTGGGGGTGTTAAAACTGGACNCTTGATTGACT
                      ____________________________________________________________
consensus             ACAGAAATTTCATCACAGGTGTAGCATTTGGGGGTGTTAAAACTGGACACTTGATTGACT
 
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JMSF006L05-           CTTGAGGGAATGATAAGCAACTAAATATACTATACGTATATCAGAGATCTATTGTGTTTC
rJMSF006K05+          CTTGAGGGAATGATNAGCAACTAAATATACTATACGTATATCAGAGATNTATTGTGTTTN
rJMSF006L05+          CTTGAGGGAATGATAAGCAACTAAATATACTATACGTATATCAGAGATCTATTGTGTTTC
                      ____________________________________________________________
consensus             CTTGAGGGAATGATAAGCAACTAAATATACTATACGTATATCAGAGATCTATTGTGTTTC
 
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JMSF006L05-           TGCAACAATTAGTGAAAGATTTTACCTGAGCAGCAATGGCGAAGCGTCGAAGTAGAGTAA
rJMSF006K05+          TGCAACAATTAGTGAAAGATTTTNCCTGAGCAGCAATGGCGAAGCGTCGAAGTAGAGTAA
rJMSF006L05+          TGCAACAATTAGTGAAAGATTTTACCTGAGCAGCAATGGNGAAGCGTCGAAGTAGAGTAA
                      ____________________________________________________________
consensus             TGCAACAATTAGTGAAAGATTTTACCTGAGCAGCAATGGCGAAGCGTCGAAGTAGAGTAA
 
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JMSF006L05-           GGGGAGGCGGAGGGCGGAGGCAAAGCAAGCTCCAGCCTGCACGCAGTAACCCTAAAATAA
rJMSF006K05+          GGGGAGGCGGAGGGCGGAGGCAAAGCAAGCTCCAGCCTGCNCGCAGTAACCCTAAAATAA
rJMSF006L05+          GGGGAGGCGGAGGGCGGAGGCAAAGCAAGCTCCAGCCTGCACGCNGTAACCCTAAAATAA
                      ____________________________________________________________
consensus             GGGGAGGCGGAGGGCGGAGGCAAAGCAAGCTCCAGCCTGCACGCAGTAACCCTAAAATAA
 
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JMSF006L05-           TTGTTGACAATGCTACACACACGTGTTTGTGTATATNAATAAATAAATAAATAAATAAAT
rJMSF006K05+          TTGTTGACAATGCTACNCNCNCGTGTTNGTGTATATAAATAAATAAATAAATAAATNAAT
rJMSF006L05+          TTGTTGACAATGCTACNCACACGNGTTTGTGTATATAAATAAATAAATAAATAAATAAAT
                      ____________________________________________________________
consensus             TTGTTGACAATGCTACACACACGTGTTTGTGTATATAAATAAATAAATAAATAAATAAAT
 
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JMSF006L05-           AAATTAACTAAATAATTGTGGACAATACCAAGTGGCTTGTA                   
rJMSF006K05+          AAA-TAACTAAATAATTGTGGACAATACCAAGTGGCTTGTAGTCCNCTNGTATCCGATTG
rJMSF006L05+          AAA-TAACTAAATAATTGTGGACAATACCAAGTGGCTTGTAGTCCNCTAGTATCCGATTG
                      ____________________________________________________________
consensus             AAA-TAACTAAATAATTGTGGACAATACCAAGTGGCTTGTAGTCCNCTAGTATCCGATTG
 
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rJMSF006K05+          GCTCCTTATGTGGGATGTCTTAGGTTCGANCCNTGGTGAAGGCGTAGATAATG       
rJMSF006L05+          GCTCCTTATGTGGGATGTCTTAGGTTCGAGCCNTGGTGAAGGCGTAGATAATGTATGTGG
                      ____________________________________________________________
consensus             GCTCCTTATGTGGGATGTCTTAGGTTCGAGCCNTGGTGAAGGCGTAGATAATGTATGTGG