Contig 008427:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004B19Sequence317013873 (6)ref|XP_009786717.1|2e-56PREDICTED: malonate--CoA ligase-like [Nicotiana sylvestris]379008427 (2)
JMSF016H02Sequence241000690 (6)740008427 (2)ref|XP_009773798.1|2e-27PREDICTED: cyclin-T1-4-like [Nicotiana sylvestris] ref|XP_009773799.1| PREDICTED

Alignment

This contig is upended


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rJMSF016H02+                GAGAATGAAAAAAACAAACGTGAANGAAACAAAGCTGGTCTAAATCTTCAATCA
                      ____________________________________________________________
consensus                   GAGAATGAAAAAAACAAACGTGAANGAAACAAAGCTGGTCTAAATCTTCAATCA
 
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rJMSF016H02+          AGTCAGAGCATGAAAGTTCCCATCAAGATGGGGGTGGAGATGGACAGTACCAAGTGAAGA
                      ____________________________________________________________
consensus             AGTCAGAGCATGAAAGTTCCCATCAAGATGGGGGTGGAGATGGACAGTACCAAGTGAAGA
 
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rJMSF016H02+          AAGAGCAGCCATCGCGTAATGCAGATTATGACAATAATGTGGAAGAGGGAGAGCTGGATC
                      ____________________________________________________________
consensus             AAGAGCAGCCATCGCGTAATGCAGATTATGACAATAATGTGGAAGAGGGAGAGCTGGATC
 
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rJMSF016H02+          CTTATGATGATATTGACAAGGGATATCATTCCCCAAAGTTGAGCAACCGGAAGCGAAAGG
                      ____________________________________________________________
consensus             CTTATGATGATATTGACAAGGGATATCATTCCCCAAAGTTGAGCAACCGGAAGCGAAAGG
 
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rJMSF016H02+          CAACTAGCCCCCCTATGGAGGGTAAGCAGAGGTATGAATATGGCTCAGGGACCCACAACC
                      ____________________________________________________________
consensus             CAACTAGCCCCCCTATGGAGGGTAAGCAGAGGTATGAATATGGCTCAGGGACCCACAACC
 
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rJMSF016H02+          ACACATACCATGACTTCCCAGAAGATAGAAACACGGGGAAAATTGCTTATTCAGAAAGAG
                      ____________________________________________________________
consensus             ACACATACCATGACTTCCCAGAAGATAGAAACACGGGGAAAATTGCTTATTCAGAAAGAG
 
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rJMSF016H02+          ACCACAAAAGGCATGTGCAGGAGAATCATGTGTGAAATGTGTTTGTTGCCAGCAGCAGCA
                      ____________________________________________________________
consensus             ACCACAAAAGGCATGTGCAGGAGAATCATGTGTGAAATGTGTTTGTTGCCAGCAGCAGCA
 
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rJMSF016H02+          GCAGCAGCAGCATTTCTCAGTCATTCTGAATGTTCAACCAGAGTCGGTTGCATTGGATGT
                      ____________________________________________________________
consensus             GCAGCAGCAGCATTTCTCAGTCATTCTGAATGTTCAACCAGAGTCGGTTGCATTGGATGT
 
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rJMSF016H02+          CCGTGATTTGGGTTGCTAGAATTTTTTGAGACAGCTTAAACCTCCGACCACTGAGAGAGA
                      ____________________________________________________________
consensus             CCGTGATTTGGGTTGCTAGAATTTTTTGAGACAGCTTAAACCTCCGACCACTGAGAGAGA
 
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rJMSF016H02+          GGTTCTATTCATAGAAGAAAAACACAAAGTGTCAGTTTTGAGGAAAGATTTGGCCAGGTA
rJMSF004B19+                                                      AAGATTTGGCCAGGTA
                      ____________________________________________________________
consensus             GGTTCTATTCATAGAAGAAAAACACAAAGTGTCAGTTTTGAGGAAAGATTTGGCCAGGTA
 
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rJMSF016H02+          TCCATGTTGGTCCTCTTTTTACTTTGTGAACATGATAGACACAATTCACTATGCTTGCTT
rJMSF004B19+          TCCATGTTGGTCCTCTTTTTACTTNGTGAACATGATAGACACAATTCACTATGCTTGCTT
                      ____________________________________________________________
consensus             TCCATGTTGGTCCTCTTTTTACTTTGTGAACATGATAGACACAATTCACTATGCTTGCTT
 
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rJMSF016H02+          ATATGCATGCTTGCGTTTATGGTGCCAGTCCTTGTTGCTATTGGAACATATATGGTAGAA
rJMSF004B19+          ATATGCATGCTTGCGTTTATGGTGCCAGTCCTTGTTGCTATTGGAACATATATGGTAGAA
                      ____________________________________________________________
consensus             ATATGCATGCTTGCGTTTATGGTGCCAGTCCTTGTTGCTATTGGAACATATATGGTAGAA
 
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rJMSF016H02+          ATCCAAAGATTGTCAGAACTAGAGTG                                  
rJMSF004B19+          ATCCAAAGATTGTCAGAACTAGAGTGTGCACCTGAACAGGGAAAGAAATAAATAGTTTTG
                      ____________________________________________________________
consensus             ATCCAAAGATTGTCAGAACTAGAGTGTGCACCTGAACAGGGAAAGAAATAAATAGTTTTG
 
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rJMSF004B19+          CCATTATGCTGTCTACTCTACTCTACTCTGCAGATCTAGGCTATAGGCTATTGGAGTTGC
                      ____________________________________________________________
consensus             CCATTATGCTGTCTACTCTACTCTACTCTGCAGATCTAGGCTATAGGCTATTGGAGTTGC
 
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rJMSF004B19+          ATGAATGTGTTAATGCTTACTAGTCATTTGTTTGTTTCATTTAATGCCAAAAATGTAAGA
                      ____________________________________________________________
consensus             ATGAATGTGTTAATGCTTACTAGTCATTTGTTTGTTTCATTTAATGCCAAAAATGTAAGA
 
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rJMSF004B19+          CTTACTTTGAATTCCAGTTTCTTTAATGATAGATAGATTTAGAAATGGAAATAGGCATAT
                      ____________________________________________________________
consensus             CTTACTTTGAATTCCAGTTTCTTTAATGATAGATAGATTTAGAAATGGAAATAGGCATAT