Contig 008423:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF034F20+                        TCTTTACCCAGATTTTGAACAAAACATTCCTTCATCCATNTGATAG
                      ____________________________________________________________
consensus                           TCTTTACCCAGATTTTGAACAAAACATTCCTTCATCCATNTGATAG
 
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rJMSF034F20+          ATGCCTCCTTCAAAGGCATAGATGATGAATATACAGACTTTCCAGTCCAAAACATTGGAC
                      ____________________________________________________________
consensus             ATGCCTCCTTCAAAGGCATAGATGATGAATATACAGACTTTCCAGTCCAAAACATTGGAC
 
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rJMSF034F20+          CAAACACTATTAAAATTGAAGAACCATTACAGACACAATTGGATCTGGCTCGAGCTAAGA
rJMSF037D06+            AACACTATTAAAATTGAAGAACCNTTACAGACGCAATTGGATCTGGCTCGAGCTAAGA
rJMSF003F08+                                       CAGACGCAATTGGATCTGGCTCGAGCTAAGA
                      ____________________________________________________________
consensus             CAAACACTATTAAAATTGAAGAACCATTACAGACGCAATTGGATCTGGCTCGAGCTAAGA
 
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rJMSF034F20+          TCATTGCCAATGAGTTTGGATGGACAGGAAACAAATTTGCTACTAAAAAACTCCTGAGAG
rJMSF037D06+          TCATTGCCAATGAGTTTGGATGGACAGGAAACAAATTTGCTACTAAAAAACTCCTGAGAG
rJMSF003F08+          TCATTGCCAATGAGTTTGGATGGACAGGAAACAANTTTGCTACTAAAAAACTCCTGAGAG
                      ____________________________________________________________
consensus             TCATTGCCAATGAGTTTGGATGGACAGGAAACAAATTTGCTACTAAAAAACTCCTGAGAG
 
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rJMSF034F20+          AGGATAGATTTGCAAAAATTTATTGTGATTCAACCATCGCATCACGATGCTTTTATCCAT
rJMSF037D06+          AGGATAGATTTGCAAAAATTTATTGCGATTCCACCATTGCATCGCGATGCTTTTATCCTT
rJMSF003F08+          AGGATAGATTTGCAAANATTTATTGCGATTCCACCATTGCATCGCGATGCTTTNATCCTT
                      ____________________________________________________________
consensus             AGGATAGATTTGCAAAAATTTATTGCGATTCCACCATTGCATCGCGATGCTTTTATCCTT
 
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rJMSF034F20+          TCGATGTTGAACATTCAAGTCCCCGGCTGGTAAACTTATACCGCAAACAATTACAAAGGC
rJMSF037D06+          TCAATGTTGAACATTCAAGACCCCGGCTGGTAAATTTATACCGCAAACAATTACAAAGGC
rJMSF003F08+          TCAATGTTGAACATTCAAGACCCCGGCTGGTAAATTTATACCGCAAACAATTACAAAGGC
                      ____________________________________________________________
consensus             TCAATGTTGAACATTCAAGACCCCGGCTGGTAAATTTATACCGCAAACAATTACAAAGGC
 
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rJMSF034F20+          GAGCTAGCTCAGCATTTGGATCAAGACCGTCTTCTTTTGAATCATCCAAAAGGAGGAGAT
rJMSF037D06+          GAGCTAGCTCGGCATTTGGATCAAGACCGTCTTCTTTCGAATCATCCAAAAGAAGGAGAT
rJMSF003F08+          GAGCTAGCTCGGCATTTGGATCAAGACCGTCTTCTTTCGAATCATCCAAAAGAAGGAGAT
                      ____________________________________________________________
consensus             GAGCTAGCTCGGCATTTGGATCAAGACCGTCTTCTTTCGAATCATCCAAAAGAAGGAGAT
 
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rJMSF034F20+          GTGAGTGAAAGAAAGAAGATAAGATTTGCTAAATTTTGATAATGAAAACTGGTGAGAAAA
rJMSF037D06+          GTGAGTGAAAGAAAGAAGATAAGATTTGCTAAATTTTGATAATGAAAACTGGTGAGAAAA
rJMSF003F08+          GTGAGTGAAAGAAAGAAGATAAGATTTGCTAAATTTTGATAATGAAAACTGGTGAGAAAA
                      ____________________________________________________________
consensus             GTGAGTGAAAGAAAGAAGATAAGATTTGCTAAATTTTGATAATGAAAACTGGTGAGAAAA
 
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rJMSF034F20+          GCAACTGGGAATCTAGATCGCCAACTGAGAATGTATTACAAAGAAG              
rJMSF037D06+          GCAACTGGGAATCTAGATCGCCAACTGAGAATGTATTACAAAGAAGTTCAGAAGACTTAA
rJMSF003F08+          GCACCTGGGAATCTAGATCGCCAACTGAGAATGTATTACAAAGAAGTTCAGAAGACTTAA
                      ____________________________________________________________
consensus             GCAACTGGGAATCTAGATCGCCAACTGAGAATGTATTACAAAGAAGTTCAGAAGACTTAA
 
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rJMSF037D06+          ATTATCACGAGATTGTATTACAAAGCAGTTCAAAAGGCTCAAAATGAATTATTACAAGAC
rJMSF003F08+          ATTATCACGAGATTGTATTACAAAGCAGTTCAAAAGGCTCAAAATGAATTATTACAAGAC
                      ____________________________________________________________
consensus             ATTATCACGAGATTGTATTACAAAGCAGTTCAAAAGGCTCAAAATGAATTATTACAAGAC
 
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rJMSF037D06+          TGTATTACACTAAGAAGCCCAGATCTGCAAGAAATTCAATATGGGTTAACAACTCAAGCT
rJMSF003F08+          TGTATTACACTAAGAAGCCCAGATCTGCAAGAAATTCAATATGGGTTAACANCTCAAGCT
                      ____________________________________________________________
consensus             TGTATTACACTAAGAAGCCCAGATCTGCAAGAAATTCAATATGGGTTAACAACTCAAGCT
 
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rJMSF037D06+          TATCAAGGACAGCTGAAACAGAAGAAGATAAGATATGAGACAAGGTAGTGAAGGTACTAT
rJMSF003F08+          TATCAAGGACAGCTGAAACAGANGAAGATAAGATATGGGACAAGGTAGTGAAGGTACTAT
                      ____________________________________________________________
consensus             TATCAAGGACAGCTGAAACAGAAGAAGATAAGATATGGGACAAGGTAGTGAAGGTACTAT
 
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rJMSF037D06+          CTCTCTTTAGAAATATCCATGTAAAAATAAAATAAATTAATGTAGCCTAGAGTACCTTTG
rJMSF003F08+          CTCTCTTTAGAAATATCCATGTAAAAATAAAATAAATTAATGTAGCCTAGAGTACCTTTG
                      ____________________________________________________________
consensus             CTCTCTTTAGAAATATCCATGTAAAAATAAAATAAATTAATGTAGCCTAGAGTACCTTTG
 
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rJMSF037D06+          TGAAAATTAATGTAGTCTTTATGGCTTTGTAAAATATTTAAATATTATGT          
rJMSF003F08+          TGAAAATTAATGTAGTCTTTATGGCTTTGTAAAATATTTAAATATTATGTTGTTCTTGNG
                      ____________________________________________________________
consensus             TGAAAATTAATGTAGTCTTTATGGCTTTGTAAAATATTTAAATATTATGTTGTTCTTGNG
 
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rJMSF003F08+          GTTATCTATATAAGGAACCTTTATGTAGCTTTTATGTAGCTGTAAGGGGATAAGGAAAAA
                      ____________________________________________________________
consensus             GTTATCTATATAAGGAACCTTTATGTAGCTTTTATGTAGCTGTAAGGGGATAAGGAAAAA