| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002C05 | Sequence | 315 | 000396 (15) | 755 | 008417 (3) | ref|XP_010318683.1| | 5e-117 | PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Solanum lycopersic | |||
| JMSF004O08 | Sequence | 262 | 006395 (6) | 343 | 008417 (3) | ref|XP_004235865.1| | 3e-26 | PREDICTED: chaperone protein ClpD, chloroplastic isoform X1 [Solanum lycopersic | |||
| JMSF030P16 | Sequence | 639 | 013144 (8) | ref|XP_009792236.1| | 3e-26 | PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Nicotiana sylvestr | 765 | 008417 (3) | ref|XP_010318683.1| | 1e-116 | PREDICTED: chaperone protein ClpD, chloroplastic isoform X2 [Solanum lycopersic |
This contig is upended
. : . : . : . : . : . :
rJMSF030P16+ CTGACAGNAGCCATCAGAAGAAAGCCTTTCACGGTTTTGC
rJMSF002C05+ ACAGAAGCCATCAGAAGAAAGCCTTTCACGGTTTTGC
____________________________________________________________
consensus CTGACAGAAGCCATCAGAAGAAAGCCTTTCACGGTTTTGC
. : . : . : . : . : . :
rJMSF030P16+ TCCTAGATGAGATTGAAAAGGCACATCCAGACGTATTCAATATTCTCCTTCAGTTATTTG
rJMSF002C05+ TCCTAGATGAGATTGAAAAGGCACATCCAGACGTATTCAATATTCTCCTTCAGTTATTTG
____________________________________________________________
consensus TCCTAGATGAGATTGAAAAGGCACATCCAGACGTATTCAATATTCTCCTTCAGTTATTTG
. : . : . : . : . : . :
rJMSF030P16+ AAGATGGTCACCTCACAGACTCTCAGGGGCGAAGGGTTTCGTTTAAGAACACCCTGATTA
rJMSF002C05+ AAGATGGTCACCTCACAGACTCTCAGGGGCGAAGGGTTTCGTTTAAGAACACCCTGATTA
____________________________________________________________
consensus AAGATGGTCACCTCACAGACTCTCAGGGGCGAAGGGTTTCGTTTAAGAACACCCTGATTA
. : . : . : . : . : . :
rJMSF030P16+ TCATGACGTCGAATGTTGGTTCAACTGCCATAGTGAAAGGAAGGCAGAATTTCATTGGTT
rJMSF002C05+ TCATGACGTCGAATGTTGGTTCAACTGCCATAGTGAAAGGAAGGCAGAATTTCATTGGTT
____________________________________________________________
consensus TCATGACGTCGAATGTTGGTTCAACTGCCATAGTGAAAGGAAGGCAGAATTTCATTGGTT
. : . : . : . : . : . :
rJMSF030P16+ TCATGCTTGCGGATGAAGAATCTACTTCGTATGCTGGAATGAAAGCGTTGGTGATGGAAG
rJMSF002C05+ TCATGCTTGCGGATGAAGAATCTACTTCGTATGCTGGAATGAAAGCGTTGGTGATGGAAG
____________________________________________________________
consensus TCATGCTTGCGGATGAAGAATCTACTTCGTATGCTGGAATGAAAGCGTTGGTGATGGAAG
. : . : . : . : . : . :
rJMSF030P16+ AGCTGAAGAACTACTTCCGTCCGGAGTTGCTGAACAGATTAGACGAAGTGGTGGTGTTCC
rJMSF002C05+ AGCTGAAGAACTACTTCCGTCCGGAGTTGCTGAACAGATTAGACGAAGTGGTGGTGTTCC
____________________________________________________________
consensus AGCTGAAGAACTACTTCCGTCCGGAGTTGCTGAACAGATTAGACGAAGTGGTGGTGTTCC
. : . : . : . : . : . :
rJMSF030P16+ GTGCTCTAGAGAAGACTCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTGAAAG
rJMSF002C05+ GTGCTCTAGAGAAGACTCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTGAAAG
____________________________________________________________
consensus GTGCTCTAGAGAAGACTCAGATGCTGGAGATACTGAATCTGATGCTGCAGGAGGTGAAAG
. : . : . : . : . : . :
rJMSF030P16+ GCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTGATAT
rJMSF004O08+ GGGAATANGGTTGGAAGTAACAGGTGCAACTATGGAGCTGATAT
rJMSF002C05+ GCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTGATAT
____________________________________________________________
consensus GCAGGCTTGTTTCCATGGGAATAGGGTTGGAAGTAACAGGTGCAACTATGGAGCTGATAT
. : . : . : . : . : . :
rJMSF030P16+ GTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACCAGCA
rJMSF004O08+ GTGANCAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACCAGCA
rJMSF002C05+ GTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACCAGCA
____________________________________________________________
consensus GTGAACAAGGATTTGACAGAAACTACGGCGCCCGACCTCTTAGGAGGGCGCTAACCAGCA
. : . : . : . : . : . :
rJMSF030P16+ TAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGATGTTG
rJMSF004O08+ TAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGATGTTG
rJMSF002C05+ TAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGATGTTG
____________________________________________________________
consensus TAATTGAAGACCTCTTGAGTGAGTTTATACTTTCTGGAGATTACAACCCTGGTGATGTTG
. : . : . : . : . : . :
rJMSF030P16+ CTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTCA-CC
rJMSF004O08+ CTGTAANTCATTTAGATGATTCCGGGANTCCAATTGTCTCCAACCGATCAAGCCTCATCC
rJMSF002C05+ CTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTCA-CC
____________________________________________________________
consensus CTGTAATTCATTTAGATGATTCCGGGAATCCAATTGTCTCCAACCGATCAAGCCTCA-CC
. : . : . : . : . : . :
rJMSF030P16+ ATGTCT
rJMSF004O08+ ATGTCTGATACAATTACAGCGTTTTNGGAGCACACATGNCGAGTATACATACATAACNAT
rJMSF002C05+ ATGTCTGATACAATTACAGTGTTTTAGGAGCATACATGATGAGTATACATATATAATTAT
____________________________________________________________
consensus ATGTCTGATACAATTACAGTGTTTTAGGAGCATACATGATGAGTATACATATATAATTAT
. : . : . : . : . : . :
rJMSF004O08+ TGTTGNTTGTATGTATACGCCAGGACATNCANTCATNTACAGCACTAACATAGACAACC
rJMSF002C05+ TGTTGTTTGTATGTATA-GCCAGGACATTCATTCATGTACAGCACTAAGATAGACAACCT
____________________________________________________________
consensus TGTTGTTTGTATGTATACGCCAGGACATTCATTCATGTACAGCACTAAGATAGACAACCT