Contig 008414:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013O18Sequence462001622 (3)ref|XP_002325525.2|7e-20hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo692008414 (5)ref|XP_010667408.1|5e-42PREDICTED: glucuronoxylan 4-O-methyltransferase 3-like [Beta vulgaris subsp. vu
JMFF025L22Sequence543001622 (3)ref|XP_002325525.2|1e-40hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo679008414 (5)ref|XP_007019817.1|8e-57UvrABC system protein C isoform 1 [Theobroma cacao] gb|EOY17042.1| UvrABC system
JMFF040P18Sequence493008414 (5)emb|CDP00853.1|1e-65unnamed protein product [Coffea canephora]
JMFF051J06Sequence567001622 (3)ref|XP_002325525.2|7e-41hypothetical protein POPTR_0019s10490g [Populus trichocarpa] gb|EEE99906.2| hypo460008414 (5)ref|XP_002526403.1|5e-50conserved hypothetical protein [Ricinus communis] gb|EEF35979.1| conserved hypot
JMSF001L07Sequence624008414 (5)ref|XP_002526403.1|5e-35conserved hypothetical protein [Ricinus communis] gb|EEF35979.1| conserved hypot

Alignment

This contig is upended


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rJMFF025L22+                                 TCNTGGAGGAGGACCGCTCCTGGATCAACCAGATTCA
                      ____________________________________________________________
consensus                                    TCNTGGAGGAGGACCGCTCCTGGATCAACCAGATTCA
 
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rJMFF025L22+          CCGGCAATTACCCTCCCTCGAATCCTACCATGTCACCTATGATACTAAGGTGACTGAGGC
                      ____________________________________________________________
consensus             CCGGCAATTACCCTCCCTCGAATCCTACCATGTCACCTATGATACTAAGGTGACTGAGGC
 
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rJMFF040P18+               AGCTCNTGCAAACAGGGGNGAGGGACGATTGCCAGGTCGTCGNCGATCCAAGANC
rJMFF025L22+          GGACGAGCTCTTGCAAACAGGGGCGAGGGACGATTGCCAGGTCGTCGGCGATCCAAGAAC
                      ____________________________________________________________
consensus             GGACGAGCTCTTGCAAACAGGGGCGAGGGACGATTGCCAGGTCGTCGGCGATCCAAGAAC
 
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rJMFF040P18+          GTNGAAATG-CCGGCTGGCTCTGAAGGGGTTGCCCAAAGAGGTGTACGAGATAGAGTGGG
rJMFF025L22+          GTCGAAATGCCCGGCTGGCTCTGAAGGGGTTGCCCAAAGAGGTGTACGAGATAGAGTGGG
rJMFF013O18+                              CTGAAGGGGTTGCCCAAAGAGGTGTACGAGATAGAGTGGG
                      ____________________________________________________________
consensus             GTCGAAATGCCCGGCTGGCTCTGAAGGGGTTGCCCAAAGAGGTGTACGAGATAGAGTGGG
 
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rJMFF051J06+          ATTTGATAATGGTGGACGCGCCGACGGGGTACCACGACGAGGCGCCGGGGAGGATGGCCG
rJMFF040P18+          ATTTGATAATGGTGGACGCGCCGACGGGGTACCANGACGAGGCGCCGGGGAGGATGGCCG
rJMFF025L22+          ATTTGATAATGGTGGACGCGCCGACGGGGTACCACGACGAGGCGCCGGGGAGGATGGCCG
rJMFF013O18+          ATTTGATAATGGTGGACGCGCCGACGGGGTACCACGACGAGGCGCCGGGGAGGATGGCCG
rJMSF001L07+                                             GACGAGGCGCCGGGGAGGATGGCNG
                      ____________________________________________________________
consensus             ATTTGATAATGGTGGACGCGCCGACGGGGTACCACGACGAGGCGCCGGGGAGGATGGCCG
 
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rJMFF051J06+          CCATTTACACCGCCGGAC-TCATCGCCCGGAACCGGGAAGGCGGCGAAACCGACGTCTTT
rJMFF040P18+          CCATTTACACCGCCGGAC-TCATCGCCCGGANCCGGGAAGGCGGCGAAACCGACGTCTTT
rJMFF025L22+          CCATTTACACCGCCGGAC-TCATCGCCCGGAACCGGGAAGGCGGCGAAACCGTCGTCTTT
rJMFF013O18+          CCATTTACACCGCCGGACTTCATCGCCCGGAACCGGGAAGGCGGCGAAACCGACGTCTTT
rJMSF001L07+          CCATNTACACCGCCGGAC-TCATCGCCCGGACCCGGGAAGGCGGCGAAACCGACGTCTTT
                      ____________________________________________________________
consensus             CCATTTACACCGCCGGAC-TCATCGCCCGGAACCGGGAAGGCGGCGAAACCGACGTCTTT
 
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rJMFF051J06+          GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTCTTTGCGAAGGG
rJMFF040P18+          GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTNTTTGCGAAGGG
rJMFF025L22+          GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTCTTTGCGAAGGG
rJMFF013O18+          GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTCTTTGCGAAGGG
rJMSF001L07+          GTTCACGACGTGGATAGGGTTGTNGAAGATAAATTCTCCAAAACTNTTCTNTGCGAAGGG
                      ____________________________________________________________
consensus             GTTCACGACGTGGATAGGGTTGTGGAAGATAAATTCTCCAAAACTTTTCTTTGCGAAGGG
 
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rJMFF051J06+          TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
rJMFF040P18+          TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
rJMFF025L22+          TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
rJMFF013O18+          TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
rJMSF001L07+          TACATGATNGAACAAGAAGGACGGNTTGGACATTTCACCATTCCCAGCCATAAAGCTCGC
                      ____________________________________________________________
consensus             TACATGATCGAACAAGAAGGACGGATTCGACATTTCACCATTCCCAGCCATAAAGCTCGC
 
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rJMFF051J06+          GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
rJMFF040P18+          GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
rJMFF025L22+          GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
rJMFF013O18+          GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
rJMSF001L07+          GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTNCCGGAAATTTTACAGTGT
                      ____________________________________________________________
consensus             GCCGGTAGGCCTTTCTGTCCACCGACATAGATAACAAATTTGCCGGAAATTTTACAGTGT
 
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rJMFF051J06+          CGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
rJMFF040P18+          NGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
rJMFF025L22+          CGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
rJMFF013O18+          CGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
rJMSF001L07+          CGAGGGTTATAAATCTNTAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTNTGTAAG
                      ____________________________________________________________
consensus             CGAGGGTTATAAATCTATAATATCGGGTGGTTTGTAGAATTGTACCTTATGCTTTGTAAG
 
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rJMFF051J06+          TTGTACATTTCTTATGTACTTCTGGTAAAGTAAAAGGTACATACGAATTGATAGAAGCAC
rJMFF040P18+          TTGTACATTTCTTATGTACT                                        
rJMFF025L22+          TTGTACATTTCTTATGTACTTCTGGTAAAGTAAAAGGTACATACGAATTGATAGAAGCAC
rJMFF013O18+          TTGTACATTTCTTATGTACTTCTGGTAAAGTAAAAGGTACATACGAATTGATAGAAGCAC
rJMSF001L07+          TTGTACATTTCTTATGTANTTCTGGTAAAGTAAAAGGTACATACGANNTGATAGAAGCAC
                      ____________________________________________________________
consensus             TTGTACATTTCTTATGTACTTCTGGTAAAGTAAAAGGTACATACGAATTGATAGAAGCAC
 
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rJMFF051J06+          ACGATATTGTAAAATTTACCGAGGATTTAAAATAATT                       
rJMFF025L22+          ACGATATTGTAAAATTTACCGAGGATTTAAAATAATT                       
rJMFF013O18+          ACGATATTGTAAAATTTACCGAGGATTTAAAATAATTTGGGAAAAATTTTACACGGCCGA
rJMSF001L07+          ACGATATTGTAAAATTTACCGAGGATTTAAAATAATTTGGGAAAAATNTTACACGGCCGA
                      ____________________________________________________________
consensus             ACGATATTGTAAAATTTACCGAGGATTTAAAATAATTTGGGAAAAATTTTACACGGCCGA
 
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rJMFF013O18+          GGGTTATTTTGTTATAATGTTGGGTGCTTTGTGGGGCTCATTGTACTTTGTGCTTTA-CA
rJMSF001L07+          GGGTTATTTTGTTNTAATGTTGGGTGCTTTGTGGGGCTCNTTGTACTNTGTGCTTTATCA
                      ____________________________________________________________
consensus             GGGTTATTTTGTTATAATGTTGGGTGCTTTGTGGGGCTCATTGTACTTTGTGCTTTATCA
 
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rJMFF013O18+          GGTTGTACTTTTTTCTTTGTGCTTCTGGTAAAGCGGAAGGTACAATTTTATAGAGCACAC
rJMSF001L07+          GGTTGTACTTTTTTCTTNGTNCTTCTGGTAAAGCGGAAGGTACAATTTTATAGAGCACAC
                      ____________________________________________________________
consensus             GGTTGTACTTTTTTCTTTGTGCTTCTGGTAAAGCGGAAGGTACAATTTTATAGAGCACAC
 
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rJMFF013O18+          AGTATTGTAAAA                                                
rJMSF001L07+          ANTATCGTAAAACNTTGTGGAGGACATTNNTCATGATCTTTTTCAGTAATTTCTAATGAT
                      ____________________________________________________________
consensus             AGTATTGTAAAACNTTGTGGAGGACATTNNTCATGATCTTTTTCAGTAATTTCTAATGAT