Contig 008413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014J22Sequence500000066 (5)ref|XP_009615606.1|6e-52PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]215008413 (4)
JMSF001K02Sequence442000066 (5)ref|XP_009615606.1|9e-41PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]319008413 (4)
JMSF042M12Sequence719000066 (5)ref|XP_009615606.1|8e-86PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]257008413 (4)
JMSF051B17Sequence640000066 (5)ref|XP_009615606.1|1e-73PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]266008413 (4)

Alignment

This contig is upended


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rJMSF001K02+                                                   CNNTGGNTTCCCCNGGGGN
                      ____________________________________________________________
consensus                                                      CNNTGGNTTCCCCNGGGGN
 
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rJMSF001K02+          AGNNTTNTTNCCCCGGGGGNGNGTNNGGGGGTTNCCNTTTTNCCGCCGNAAATTTTTTTC
                      ____________________________________________________________
consensus             AGNNTTNTTNCCCCGGGGGNGNGTNNGGGGGTTNCCNTTTTNCCGCCGNAAATTTTTTTC
 
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rJMSF042M12+                  TTTTTTTTTTTTCTTTTTAATTACTGAGTATCTATTTAGAGAGTTCAAATAT
rJMSF051B17+                  TTTTTTTTTTTTCTTTTTAATTACTGAGTATCTATTTAGAGAGTTCAAATAT
rJMFF014J22+                  TTTTTTTTTTTTCTTTTTAANTACTGAGTATCTATTTAGAGAGTTCAAATAT
rJMSF001K02+          NTTACNNNTTTTTTTTTTTTCTTTTTAATTACTGAGTATCTATTTAGAGAGTTCAAATAT
                      ____________________________________________________________
consensus             NTTACNNNTTTTTTTTTTTTCTTTTTAATTACTGAGTATCTATTTAGAGAGTTCAAATAT
 
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rJMSF042M12+          TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
rJMSF051B17+          TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
rJMFF014J22+          TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
rJMSF001K02+          TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
                      ____________________________________________________________
consensus             TCAAAAAATGCAAAATAAGTGTGGCCTATACGGCAAAATTGTAATCTTAGGATAGGTAGC
 
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rJMSF042M12+          TTGTCTTCATGCTTTTTGNGTGTTGCTTTTGCTTTTTTCTACNGTTTTTTTTTTCTTTCT
rJMSF051B17+          TTGTCTTCATGCTTTTTGNGTGTTGCTTTTGCTTTTTTCTACNGTTTTTTTTTTCTTTCT
rJMFF014J22+          TTGTCTTCATGCTTTTTGTGTGTTGCTTTTGCTTTTTTCTACNGTNTTTTNTTTCTTTCT
rJMSF001K02+          TTGTCTTCATGCTTTTTGTGTGTTGCTTTTGCTTTTTTCTACTGTTTTTTTTTTCTTTCT
                      ____________________________________________________________
consensus             TTGTCTTCATGCTTTTTGTGTGTTGCTTTTGCTTTTTTCTACTGTTTTTTTTTTCTTTCT
 
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rJMSF042M12+          TTTTTAAATTTTGTGTATTAAATATTTATTTGATTTGACTTTCG                
rJMSF051B17+          TTTTTAAATTTTGTGTATTAAATATTTATTTGATTTGACTTTCG                
rJMFF014J22+          T                                                           
rJMSF001K02+          TTTTTAAATTTTGTGTATTAAATATTTATTTGATTTGACTTTNGTAATGAAAAGGGGTTG
                      ____________________________________________________________
consensus             TTTTTAAATTTTGTGTATTAAATATTTATTTGATTTGACTTTCGTAATGAAAAGGGGTTG