Contig 008412:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF001I03-                                                                      A
JMSF051L16-                                GAAGAAGAGAAAACATAACGAAAACAGCAAAAATTAAAA
                      ____________________________________________________________
consensus                                  GAAGAAGAGAAAACATAACGAAAACAGCAAAAATTAAAA
 
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JMSF001I03-           AGAAAAAAATGAGAAGAGAAGTATATCAGAGGAGTCTCATTCTTCAGGTATTCTTCACAT
JMSF051L16-           AGAAAAAAATGAGAAGAGAAGTATATCAGAGGAGTCTCATTCTTCAGGTATTCTTCACAT
                      ____________________________________________________________
consensus             AGAAAAAAATGAGAAGAGAAGTATATCAGAGGAGTCTCATTCTTCAGGTATTCTTCACAT
 
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JMSF001I03-           TCTCTGTAATAATCATGACAAATATGGTGGTATCTGCAGGTGTGAGTGCCGCTAACCTCC
JMSF051L16-           TCTCTGTAATAATCATGACAAATATGGTGGTATCTGCAGGTGTGAGTGCCGCTAACCTCC
                      ____________________________________________________________
consensus             TCTCTGTAATAATCATGACAAATATGGTGGTATCTGCAGGTGTGAGTGCCGCTAACCTCC
 
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JMSF001I03-           GAATCGTTAGCAACGCTTCTTCTCTCATCGGCGATTACACGGAAGTGGA           
JMSF051L16-           GAATCGTTAGCAACGCTTCTTCTCTCATCGGCGATTACACGGAAGTGGACGGCGGCGAAG
rJMSF051L16+                                                        GGACGGCGGCGAAG
                      ____________________________________________________________
consensus             GAATCGTTAGCAACGCTTCTTCTCTCATCGGCGATTACACGGAAGTGGACGGCGGCGAAG
 
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JMSF051L16-           AATCCTCGACGGATTGGGGAATCGGCAGAATGCTCCTTACTAATAAGGGTGCTTTTGCCG
rJMSF051L16+          AATCCTCGACGGATT-GGGAATCGGCAGAATGCTCCTTACTAATAAGGGTGCTTTTGCCG
                      ____________________________________________________________
consensus             AATCCTCGACGGATTGGGGAATCGGCAGAATGCTCCTTACTAATAAGGGTGCTTTTGCCG
 
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JMSF051L16-           ATAGTGCAAAATTTTGGCGTTGGATACGAAAAAAGTTATGCATGGGATTGGGATACGGAG
rJMSF051L16+          ATAGTGCAAAATTTTGGCGTTGGATACGAAAAAAGTTATGCATGGGATTGGGATACGGAG
                      ____________________________________________________________
consensus             ATAGTGCAAAATTTTGGCGTTGGATACGAAAAAAGTTATGCATGGGATTGGGATACGGAG
 
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JMSF051L16-           AAGGGAAAACCGTGTTTGTGGAGTCCTAGCCCATAGCAATTTTAAAAAGTTACCATTCTC
rJMSF051L16+          AAGGGAAAACCGTGTTTGTGGAGTCCTAGCCCATAGCAATTTTAAAAAGTTACCATTCTC
                      ____________________________________________________________
consensus             AAGGGAAAACCGTGTTTGTGGAGTCCTAGCCCATAGCAATTTTAAAAAGTTACCATTCTC
 
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JMSF051L16-           AATTTCATACGATTACTTTATGCGGTTCCCAAAATCTGTAAAAATCCTAGTTTGACTCCA
rJMSF051L16+          AATTTCATACGATTACTTTATGCGGTTCCCAAAATCTGTAAAAATCCTAGTTTGACTCCA
                      ____________________________________________________________
consensus             AATTTCATACGATTACTTTATGCGGTTCCCAAAATCTGTAAAAATCCTAGTTTGACTCCA
 
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JMSF051L16-           ATCTATTCATCTCCTCCTTTCTTCTACATTTTTTATCTCCTTCCTCTTTCTTGTCCATTT
rJMSF051L16+          ATCTATTCATCTCCTCCTTTCTTCTACATTTTTTATCTCCTTCCTCTTTCTTGTCCATTT
rJMSF001I03+                                             TCTCCTTCCTCTTTCTGGTCCATTT
                      ____________________________________________________________
consensus             ATCTATTCATCTCCTCCTTTCTTCTACATTTTTTATCTCCTTCCTCTTTCTTGTCCATTT
 
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JMSF051L16-           TTTTACCTTCAATAAAATTCATCTATGGTCCCAGCACAATTCTTTTAAAATAGCAAAAAA
rJMSF051L16+          TTTTACCTTCAATAAAATTCATCTATGGTCCCAGCACAATTCTTTTAAAATAGCAAAAAA
rJMSF001I03+          TTTTACCTTCAATAAAATTCATCTATGGTCCCAGCNCAATTCTTTTAAAATAGCAAAGAA
                      ____________________________________________________________
consensus             TTTTACCTTCAATAAAATTCATCTATGGTCCCAGCACAATTCTTTTAAAATAGCAAAAAA
 
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JMSF051L16-           TAAGAGTTGTGGTCCCAAAAGAGTTGTGGTCCCAAAAATAGTTACCAACTGTGCTTGAAA
rJMSF051L16+          TAAGAGTTGTGGTCCCAAAAGAGTTGTGGTCCCAAAAATAGTTACCAACTGTGCTTGAAA
rJMSF001I03+          TAAGAGTTGTGGTCCCAAAAGAGTTGTGGTCCCAAAAATAGTTACCAACTGTGCTTGAAA
                      ____________________________________________________________
consensus             TAAGAGTTGTGGTCCCAAAAGAGTTGTGGTCCCAAAAATAGTTACCAACTGTGCTTGAAA
 
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JMSF051L16-           TCTGTTCGGGCAGTGGTGGGCGCGGGGTGCGCAACGGTTGTAAGCTGCTCCGGCTTGCGT
rJMSF051L16+          TCTGTTCGGGCAGTGGTGGGCGCGGGGTGCGCAACGGTTGTAAGCTGCTCCGGCTTGCGT
rJMSF001I03+          TCTGTTCGGGCAGTGGTGGGCGCGGGGTGCGCAACGGTTGTAAGCTGCTCCGGCTTGCGT
                      ____________________________________________________________
consensus             TCTGTTCGGGCAGTGGTGGGCGCGGGGTGCGCAACGGTTGTAAGCTGCTCCGGCTTGCGT
 
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JMSF051L16-           TTTCCGGCGAGC                                                
rJMSF051L16+          TTTCCGGCGAGCGACAGCGGCAGAGGCTGACGGTTTCCGGCAAGGGACGACGGTAGGAGA
rJMSF001I03+          TTTCCGGCGAGCGACAGCGGCAGAGGCTGACGGTTTCCGGCAAGGGACGACGGTAGGAGA
                      ____________________________________________________________
consensus             TTTCCGGCGAGCGACAGCGGCAGAGGCTGACGGTTTCCGGCAAGGGACGACGGTAGGAGA
 
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rJMSF051L16+          CGGCTGTGGGAGTGGATTCCGGCGGTTTTGCTTGAATAACATCTTAAG            
rJMSF001I03+          CGGCTGTGGGAGTGGATTCCGGCGGTTTTGCTTGAATAACATCTTAAGGTTAGTTTCTCC
                      ____________________________________________________________
consensus             CGGCTGTGGGAGTGGATTCCGGCGGTTTTGCTTGAATAACATCTTAAGGTTAGTTTCTCC
 
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rJMSF001I03+          NTTAATGGNGAAAGCTTGATTTTTTTTTTTATTTTTTTATAAATCTAATTTTTCTGAAAT
                      ____________________________________________________________
consensus             NTTAATGGNGAAAGCTTGATTTTTTTTTTTATTTTTTTATAAATCTAATTTTTCTGAAAT
 
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rJMSF001I03+          CTGTTGTTTATTTGAACAATGCTTTTGCAATAATGCTTATAAAATCTGTGATTTTTTTGA
                      ____________________________________________________________
consensus             CTGTTGTTTATTTGAACAATGCTTTTGCAATAATGCTTATAAAATCTGTGATTTTTTTGA
 
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rJMSF001I03+          ATAATGCTTATGAAATATGTTGGTAGAATGTTGTAATGCATTAGAATGTTTGTTGCCACA
                      ____________________________________________________________
consensus             ATAATGCTTATGAAATATGTTGGTAGAATGTTGTAATGCATTAGAATGTTTGTTGCCACA
 
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rJMSF001I03+          ATGCATCTTTAGGTAGACTGCAATACTATAATTTCAAAAAGACTAATGATTTGATTTCGG
                      ____________________________________________________________
consensus             ATGCATCTTTAGGTAGACTGCAATACTATAATTTCAAAAAGACTAATGATTTGATTTCGG
 
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rJMSF001I03+          GTGAAATCACATTCAACCCTTGTTATATTTATGCTTGCTTTGTGCTTTCTTCATTACCCT
                      ____________________________________________________________
consensus             GTGAAATCACATTCAACCCTTGTTATATTTATGCTTGCTTTGTGCTTTCTTCATTACCCT
 
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rJMSF001I03+          ACAGAATTCTTTATTTGTATTTGACCATGGTATATAATCATACAGACTCCAGTAAAGCTG
                      ____________________________________________________________
consensus             ACAGAATTCTTTATTTGTATTTGACCATGGTATATAATCATACAGACTCCAGTAAAGCTG