| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031N11 | Sequence | 336 | 008410 (6) | ||||||||
| JMFF038M13 | Sequence | 211 | 008410 (6) | ref|XP_003559706.1| | 86.3 | PREDICTED: uncharacterized protein LOC100823209 [Brachypodium distachyon] | |||||
| JMFF051O23 | Sequence | 637 | 008410 (6) | ref|XP_004244058.1| | 2e-54 | PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LO | 591 | 008410 (6) | ref|XP_007146565.1| | 4e-97 | hypothetical protein PHAVU_006G051400g [Phaseolus vulgaris] gb|ESW18559.1| hypot |
| JMSF050J05 | Sequence | 652 | 008410 (6) | ref|XP_004244058.1| | 6e-84 | PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LO | 765 | 008410 (6) | ref|XP_004244058.1| | 1e-141 | PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LO |
This contig is upended
. : . : . : . : . : . :
JMFF031N11- GGTA
JMFF051O23- GGTA
____________________________________________________________
consensus GGTA
. : . : . : . : . : . :
JMFF031N11- TCGAAGCGCATTTTTTTTTTATATTCTTTTGTTCTTTGTCACTTTCTGCATCAGTGTANC
JMFF051O23- TCGAAGCGCATTTTTTTTTTATATTCTTTTGTTCTTTGTCACTTTCTGCATCAGTGTAGC
JMSF050J05- ATCAGTGTAGC
____________________________________________________________
consensus TCGAAGCGCATTTTTTTTTTATATTCTTTTGTTCTTTGTCACTTTCTGCATCAGTGTAGC
. : . : . : . : . : . :
JMFF031N11- AATGGCGCATAAGTGTGAAAGGGAATCCTGACTANCCATTTACATATGAGCGGATAATTG
JMFF051O23- AATGGCGCATAAGTGTGAAAGGGAATCCTGACTAGCCATTTACATATGAGCGGATAATTG
JMSF050J05- AATGGCGCATAAGTGTGAAAGGGAATCCTGACTAGCCATTTACATATGAGCGGATAATTG
____________________________________________________________
consensus AATGGCGCATAAGTGTGAAAGGGAATCCTGACTAGCCATTTACATATGAGCGGATAATTG
. : . : . : . : . : . :
JMFF031N11- ATGCAAGGACTAAATCTTTGNGGNATTTTTGGAGCATCTGANATGGGTTTTTCTGCTGCC
JMFF051O23- ATGCAAGGACTAAATCTTTGTGGTATTTTTGGAGCATCTGAGATGGGTTTTTCTGCTGCC
JMSF050J05- ATGCAAGGACTAAATCTTTGTGGTATTTTTGGAGCATCTGAGATGGGTTTTTCTGCTGCC
____________________________________________________________
consensus ATGCAAGGACTAAATCTTTGTGGTATTTTTGGAGCATCTGAGATGGGTTTTTCTGCTGCC
. : . : . : . : . : . :
JMFF031N11- ACTCCTAAATCATTGCCTCATTGTTTTTCTCTTAAAAATTCTGATCACAAACGCCTGCAG
JMFF051O23- ACTCCTAAATCATTGCCTCATTGTTTTTCTCTTAGAAATTCTGATCACAAACGCCTGCAG
JMSF050J05- ACTCCTAAATCATTGCCTCATTGTTTTTCTCTTAGAAATTCTGATCACAAACGCCTGCAG
____________________________________________________________
consensus ACTCCTAAATCATTGCCTCATTGTTTTTCTCTTAGAAATTCTGATCACAAACGCCTGCAG
. : . : . : . : . : . :
JMFF031N11- TTTCAATCTTTCAAGTACCCACCAANAAGGATCATTTCCTGCAAGCTTGAGTCNATGANA
JMFF051O23- TTTCAATCTTTCAAGTACCCACCAAGAAGGATCATTTCCTGCAAGCTTGAGTCGATGAGA
JMSF050J05- TTTCAATCTTTCAAGTACCCACCAAGAAGGATCATTTCCTGCAAGCTTGAGTCGATGAGA
rJMSF050J05+ AGGATCATTTCCTGCAAGCNTGAGTCGATGAGA
____________________________________________________________
consensus TTTCAATCTTTCAAGTACCCACCAAGAAGGATCATTTCCTGCAAGCTTGAGTCGATGAGA
. : . : . : . : . : . :
JMFF031N11- TTTGAAAAAANAATGANCCCGAATGAGG
JMFF051O23- TTTGAAGAAAGAATGAGCCCGAATGAGGTGAAGAAAGAGATCCAGAAATGTTATGAACTG
JMSF050J05- TTTGAAGAAAGAATGAGCCCGAATGAGGTGAAGAAAGAGATCCAGAAATGTTATGAACTG
rJMSF050J05+ TTTGAAGAAAGAATGAGCCCGAATGAGGTGAAGAAAGAGATCCAGAAATGTTATGAACTG
____________________________________________________________
consensus TTTGAAGAAAGAATGAGCCCGAATGAGGTGAAGAAAGAGATCCAGAAATGTTATGAACTG
. : . : . : . : . : . :
JMFF051O23- ATACATAGGCTTGGCAGGGGTGTTGTGTATTTGGGCTCTTCAAGGATGGGTCCTGGCCAT
JMSF050J05- ATACATAGGCTTGGCAGGGGTGTTGTGTATTTGGGCTCTTCAAGGATGGGTCCTGGCCAT
rJMSF050J05+ ATACATAGGCTTGGCAGGGGTGTTGTGTATTTGGGCTCTTCAAGGATGGGTCCTGGCCAT
____________________________________________________________
consensus ATACATAGGCTTGGCAGGGGTGTTGTGTATTTGGGCTCTTCAAGGATGGGTCCTGGCCAT
. : . : . : . : . : . :
JMFF051O23- CCACACTATACACAAGCATTTGAGTTGGGGAAAGAGATTGCAACCCTCTTGGATTGTACT
JMSF050J05- CCACACTATACACAAGCATTTGAGTTGGGGAAAGAGATTGCAACCCTCTTGGATTGTACT
rJMSF050J05+ CCACACTATACACAAGCATTTGAGTTGGGGAAAGAGATTGCAACCCTCTTGGATTGTACT
____________________________________________________________
consensus CCACACTATACACAAGCATTTGAGTTGGGGAAAGAGATTGCAACCCTCTTGGATTGTACT
. : . : . : . : . : . :
JMFF051O23- TCATGGTCGGGGGCTGGACCAGGCCTTATGGATGCTGTCACAAAAGGTGCTTTACAAGCC
JMSF050J05- TCATGGTCGGGGGCTGGACCAGGCCTTATGGATGCTGTCACAAAAGGTGCTTTACAAGCC
rJMSF050J05+ TCATGGTCGGGGGCTGGACCAGGCCTTATGGATGCTGTCACAAAAGGTGCTTTACAAGCC
rJMFF051O23+ GGGGCTGGACCAGGCCTTATGGATGCTGTCACAAAAGGTGCTTTACAAGCC
____________________________________________________________
consensus TCATGGTCGGGGGCTGGACCAGGCCTTATGGATGCTGTCACAAAAGGTGCTTTACAAGCC
. : . : . : . : . : . :
JMFF051O23- GGAAAGGCTGTTGGTGGTTTTAGAATAGGC-AAGAAGCTGGGGAATGGACGGCCACNAAT
JMSF050J05- GGAAAGGCTGTTGGTGGTTTTAAGATAGGCAAAGAAGCTGGGGAATGGACGGCCACAAAT
rJMSF050J05+ GGAAAGGCTGTTGGTGGTTTTAAGATAGGCAAAGAAGCTGGGGAATGGACGGCCACAAAT
rJMFF051O23+ GGAAAGGCTGTTGGTGGTTTTAAGATAGGCAAAGAAGCTGGGGAATGGACGGCCACAAAT
____________________________________________________________
consensus GGAAAGGCTGTTGGTGGTTTTAAGATAGGCAAAGAAGCTGGGGAATGGACGGCCACAAAT
. : . : . : . : . : . :
JMFF051O23- TTTCACTCATACTTGCCATCCGAAACATACCTTA
JMSF050J05- TTTCACTCATACTTGCCATCCGAAACATACCTTACTTGCAGGTTTTTCTCTGCGAGGAAG
rJMFF038M13+ CGAGGAAG
rJMSF050J05+ TTTCACTCATACTTGCCATCCGAAACATACCTTACTTGCAGGTTTTTCTCTGCGAGGAAG
rJMFF051O23+ TTTCACTCATACTTGCCATCCGAAACATACCTTACTTGCAGGTTTTTCTCTGCGAGGAAG
____________________________________________________________
consensus TTTCACTCATACTTGCCATCCGAAACATACCTTACTTGCAGGTTTTTCTCTGCGAGGAAG
. : . : . : . : . : . :
JMSF050J05- CATGGTTTAGTAGATGCTGCTGTTAGATCTAGTAGCTTGG
rJMFF038M13+ CATNNTNTAGTAGATGNTGCTGTTAGATNTAGTAGCNNGGATAAGACGGCTGNGATTNCT
rJMSF050J05+ CATGGTTTAGTAGATGCTGCTGTTAGATCTAGTAGCTTGGATAAGACGGCTGTGATTGCT
rJMFF051O23+ CATGGTTTAGTAGATGCTGCTGTTAGATCTAGTAGCTTGGATAAGACGGCTGTGATTGCT
____________________________________________________________
consensus CATGGTTTAGTAGATGCTGCTGTTAGATCTAGTAGCTTGGATAAGACGGCTGTGATTGCT
. : . : . : . : . : . :
rJMFF038M13+ CTNCCTNGAGGAANTGGCACTCTNGATGAGATANTNGAGCNTATGGCATCNATCCANCTT
rJMSF050J05+ CTGCCTGGAGGAATTGGCACTCTGGATGAGATATTTGAGCTTATGGCATTGATCCAACTT
rJMFF051O23+ CTGCCTGGAGGAATTGGCACTCTGGATGAGATATTTGAGCTTATGGCATTGATCCAACTT
____________________________________________________________
consensus CTGCCTGGAGGAATTGGCACTCTGGATGAGATATTTGAGCTTATGGCATTGATCCAACTT
. : . : . : . : . : . :
rJMFF038M13+ GATNNAANNNGCTCAGNTCTCCCCGTTCNTNTCCTNTTGATGAACTATGATTCGTTTTAT
rJMSF050J05+ GATCGAATTGGCTCAGTTCTCCCCGTTCCTTTCCTTTTGATGAACTATGATTCGTTTTAT
rJMFF051O23+ GATCGAATTGGCTCAGTTCTCCCCGTTCCTTTCCTTTTGATGAACTATGATTCGTTTTAT
____________________________________________________________
consensus GATCGAATTGGCTCAGTTCTCCCCGTTCCTTTCCTTTTGATGAACTATGATTCGTTTTAT
. : . : . : . : . : . :
rJMFF038M13+ TCAAAG
rJMSF050J05+ TCAAAGCTGCTCGACTTTCTCCATGAATGTGAGAACTGGGGTACACTCTCCAAGGGCGAG
rJMFF051O23+ TCAAAGCTGCTCGACTTTCTCCATGAATGTGAGAACTGGGGTACACTCTCCAAGGGCGAG
____________________________________________________________
consensus TCAAAGCTGCTCGACTTTCTCCATGAATGTGAGAACTGGGGTACACTCTCCAAGGGCGAG
. : . : . : . : . : . :
rJMSF050J05+ GCTGCATCGCTATGGAAAGTTTGTAACAATAACACGGAAGCTTTGTCATATTTGTCAGAA
rJMFF051O23+ GCTGCATCGCTATGGAAAGTTTGTAACAATAACACGGAAGCTTTGTCATATTTGTCAGAA
____________________________________________________________
consensus GCTGCATCGCTATGGAAAGTTTGTAACAATAACACGGAAGCTTTGTCATATTTGTCAGAA
. : . : . : . : . : . :
rJMSF050J05+ TTTTATAGCATTAAGTCTGTTGATAATTTTAGAAAAGCAATAGCAAGTGATTGTGAAACT
rJMFF051O23+ TTTTATAGCATTAAGTCTGTTGATAATTTTAGAAAAGCAATAGCAAGTGATTGTGAAACT
____________________________________________________________
consensus TTTTATAGCATTAAGTCTGTTGATAATTTTAGAAAAGCAATAGCAAGTGATTGTGAAACT
. : . : . : . : . : . :
rJMSF050J05+ GCACTGTAATAT
rJMFF051O23+ GCACTGTAATATTACACTGGGTGTTGGTAAGCTCTGAATGCAAACAACTTCTTTGACAAG
____________________________________________________________
consensus GCACTGTAATATTACACTGGGTGTTGGTAAGCTCTGAATGCAAACAACTTCTTTGACAAG