| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024K10 | Sequence | 490 | 008409 (8) | ref|XP_006344617.1| | 8e-89 | PREDICTED: F-box protein At1g55000-like [Solanum tuberosum] | 728 | 008409 (8) | ref|XP_007030820.1| | 3e-73 | Peptidoglycan-binding LysM domain-containing protein isoform 1 [Theobroma cacao |
| JMFF026P04 | Sequence | 611 | 008409 (8) | ref|XP_006344617.1| | 3e-98 | PREDICTED: F-box protein At1g55000-like [Solanum tuberosum] | 750 | 008409 (8) | ref|XP_007030820.1| | 5e-58 | Peptidoglycan-binding LysM domain-containing protein isoform 1 [Theobroma cacao |
| JMFF051G15 | Sequence | 546 | 008409 (8) | ref|XP_006344617.1| | 2e-94 | PREDICTED: F-box protein At1g55000-like [Solanum tuberosum] | 476 | 008409 (8) | |||
| JMFF051L21 | Sequence | 510 | 008409 (8) | ref|XP_006344617.1| | 3e-73 | PREDICTED: F-box protein At1g55000-like [Solanum tuberosum] | 613 | 008409 (8) | ref|XP_010042987.1| | 2e-16 | PREDICTED: F-box protein At1g55000-like [Eucalyptus grandis] |
This contig is upended
. : . : . : . : . : . :
JMFF051L21- GGCAATGGCATAGCCTCCCAACCACTAAAACTGCACCGAAAA
JMFF026P04- GGCAATGGCATAGCCTCCCAACCACTAAAACTGCACCGAAAA
____________________________________________________________
consensus GGCAATGGCATAGCCTCCCAACCACTAAAACTGCACCGAAAA
. : . : . : . : . : . :
JMFF051G15- GGGATGTTGTTGTGACGAAGAAGAGGAGCAACTTTTCCAACCGTT
JMFF051L21- CCCAGCGACAAAAATGGGATGTTGTTGTGACGAAGAAGAGGAGCAACTTTTCCAACCGTT
JMFF026P04- CCCAGCGACAAAAATGGGATGTTGTTGTGACGAAGAAGAGGAGCAACTTTTCCAACCGTT
____________________________________________________________
consensus CCCAGCGACAAAAATGGGATGTTGTTGTGACGAAGAAGAGGAGCAACTTTTCCAACCGTT
. : . : . : . : . : . :
JMFF051G15- GAATCCGCCTGAAACACTCCCAACTTCTTCCTCCATCACAACCACCGGCTACGGCGGAGA
JMFF051L21- GAATCCGCCTGAAACACTCCCAACTTCTTCCTCCATCACAACCACCGGCTACGGCGGAGA
JMFF024K10- CCAACTTCTTCCTCCATCACAACCACCGGCTACGGCGGAGA
JMFF026P04- GAATCCGCCTGAAACACTCCCAACTTCTTCCTCCATCACAACCACCGGCTACGGCGGAGA
____________________________________________________________
consensus GAATCCGCCTGAAACACTCCCAACTTCTTCCTCCATCACAACCACCGGCTACGGCGGAGA
. : . : . : . : . : . :
JMFF051G15- CGCCGTGATCTCGCCGATGAATTCCAATTTCTCTGCTTTGATCTGCCACGACACTCTCCG
JMFF051L21- CGCCGTGATCTCGCCGATGAATTCCAATTTCTCTGCTTTGATCTGCCACGACACTCTCCG
JMFF024K10- CGCCGTGATCTCGCCGATGAATTCCAATTTCTCTGCTTTGATCTGCCACGACACTCTCCG
JMFF026P04- CGCCGTGATCTCGCCGATGAATTCCAATTTCTCTGCTTTGATCTGCCACGACACTCTCCG
____________________________________________________________
consensus CGCCGTGATCTCGCCGATGAATTCCAATTTCTCTGCTTTGATCTGCCACGACACTCTCCG
. : . : . : . : . : . :
JMFF051G15- CGCAATCCTGGAGAAGCTCCCGCTGCCTGATTTAGCACGCGCCGCATGCGTTTCCAGGCT
JMFF051L21- CGCAATCCTGGAGAAGCTCCCGCTGCCTGATTTAGCACGCGCCGCATGCGTTTCCAGGCT
JMFF024K10- CGCAATCCTGGAGAAGCTCCCGCTGCCTGATTTAGCACGCGCCGCATGCGTTTCCAGGCT
JMFF026P04- CGCAATCCTGGAGAAGCTCCCGCTGCCTGATTTAGCACGCGCCGCATGCGTTTCCAGGCT
____________________________________________________________
consensus CGCAATCCTGGAGAAGCTCCCGCTGCCTGATTTAGCACGCGCCGCATGCGTTTCCAGGCT
. : . : . : . : . : . :
JMFF051G15- CTGGAATGCGGTGGCCTCCGATAGGGAGATCCAGACCAGGGCATTCAAGGCTCCCTGGAA
JMFF051L21- CTGGAATGCGGTGGCCTCCGATAGGGAGATCCAGACCAGGGCATTCAAGGCTCCCTGGAA
JMFF024K10- CTGGAATGCGGTGGCCTCCGATAGGGAGATCCAGACCAGGGCATTCAAGGCTCCCTGGAA
JMFF026P04- CTGGAATGCGGTGGCCTCCGATAGGGAGATCCAGACCAGGGCATTCAAGGCTCCCTGGAA
____________________________________________________________
consensus CTGGAATGCGGTGGCCTCCGATAGGGAGATCCAGACCAGGGCATTCAAGGCTCCCTGGAA
. : . : . : . : . : . :
JMFF051G15- GCTCAAACAAGTCATCGGAAGCCCTAGCTCCGGCGGCTTCTGGAGAGACAACACCATCTC
JMFF051L21- GCTCAAACAAGTCATCGGAAGCCCTAGCTCCGGCGGCTTCTGGAGAGACAACACCATCTC
JMFF024K10- GCTCAAACAAGTCATCGGAAGCCCTAGCTCCGGCGGCTTCTGGAGAGACAACACCATCTC
JMFF026P04- GCTCAAACAAGTCATCGGAAGCCCTAGCTCCGGCGGCTTCTGGAGAGACAACACCATCTC
____________________________________________________________
consensus GCTCAAACAAGTCATCGGAAGCCCTAGCTCCGGCGGCTTCTGGAGAGACAACACCATCTC
. : . : . : . : . : . :
JMFF051G15- CAAATTCGCTATCTCTCACCGAATCGTCCGTGGTGATACTGTTGCTAGTCTAGCCGTCAA
JMFF051L21- CAAATTCGCTATCTCTCACCGAATCGTCCGTGGTGATACTGTTGCTAGTCTAGCCCGTCA
JMFF024K10- CAAATTCGCTATCTCTCACCGAATCGTCCGTGGTGATACTGTTGCTAGTCTAGCCGTCAA
JMFF026P04- CAAATTCGCTATCTCTCACCGAATCGTCCGTGGTGATACTGTTGCTAGTCTAGCCGTCAA
rJMFF024K10+ CCGTGGTGATACTGTTGCTAGTCTAGCCGTCAA
____________________________________________________________
consensus CAAATTCGCTATCTCTCACCGAATCGTCCGTGGTGATACTGTTGCTAGTCTAGCCGTCAA
. : . : . : . : . : . :
JMFF051G15- GTACTCGGTTCATGTTATGGATATACAACGCTTGAACCATATGATGAGTGACCATGGCAT
JMFF051L21- GTACTCGGTTCATGTTATGGATATAAAACGCTTGAACAATATGATGAG
JMFF024K10- GTACTCGGTTCATGTTATGGATATAAAACGCTTGAACAATATGATGAGTGACCATGGCAT
JMFF026P04- GTACTCGGTTCATGTTATGGATATAAAACGCTTGAACAATATGATGAGTGACCATGGCAT
rJMFF024K10+ GTACTCGGTTCATGTTATGGATATAAAACGCTTGAACAATATGATGAGTGACCATGGCAT
rJMFF026P04+ ACAATATGATGAGTGACCATGGCAT
____________________________________________________________
consensus GTACTCGGTTCATGTTATGGATATAAAACGCTTGAACAATATGATGAGTGACCATGGCAT
. : . : . : . : . : . :
JMFF051G15- ATATTCAAGGGAGAGGTTACTCATTCCTATTAGCAATCCTGAGCTGCTAATAGAGGGCAC
JMFF024K10- ATATTCAAGGGAGAGGTTACTCATTCCTATTAGCAATCCTGAGCTGCTAATAGAGGGCAC
JMFF026P04- ATATTCAAGGGAGAGGTTACTCATTCCTATTAGCAATCCTGAGCTGCTAATAGAGGGCAC
rJMFF024K10+ ATATTCAAGGGAGAGGTTACTCATTCCTATTAGCAATCCTGAGCTGCTAATAGAGGGCAC
rJMFF026P04+ ATATTCAAGGGAGAGGTTACTCATTCCTATTAGCAATCCTGAGCTGCTAATAGAGGGCAC
____________________________________________________________
consensus ATATTCAAGGGAGAGGTTACTCATTCCTATTAGCAATCCTGAGCTGCTAATAGAGGGCAC
. : . : . : . : . : . :
JMFF051G15- ATGCTATGTGGAGCTGGAT
JMFF024K10- ATGCTATGTGGAGCTGGATACGTATGCAA
JMFF026P04- ATGCTATGTGGAGCTGGATACGTATGCAA
rJMFF024K10+ ATGCTATGTGGAGCTGGATACGTATGCAAAAAGGGAAGTGGCAGTATTGTATCTTGAGGG
rJMFF026P04+ ATGCTATGTGGAGCTGGATACGTATGCAAAAAGGGAAGTGGCAGTATTGTATCTTGAGGG
____________________________________________________________
consensus ATGCTATGTGGAGCTGGATACGTATGCAAAAAGGGAAGTGGCAGTATTGTATCTTGAGGG
. : . : . : . : . : . :
rJMFF024K10+ CAACCCTGATGGAAAACCCAAATGTGTATTGAGAAAGCTGACCTCCGAACATGGTAAGAG
rJMFF026P04+ CAACCCTGATGGAAAACCCAAATGTGTATTGAGAAAGCTGACCTCCGAACATGGTAAGAG
rJMFF051L21+ GAACATGGTAAGAG
____________________________________________________________
consensus CAACCCTGATGGAAAACCCAAATGTGTATTGAGAAAGCTGACCTCCGAACATGGTAAGAG
. : . : . : . : . : . :
rJMFF024K10+ AAGGGTGATTGACTCCTTGAGGAGGAGCATGCAAGTTGATAATGAGACTGCTCAATACTA
rJMFF026P04+ AAGGGTGATTGACTCCTTGAGGAGGAGCATGCAAGTTGATAATGAGACTGCTCAATACTA
rJMFF051L21+ AAGGGTGATTGACTCCTGAGGGAGGAGCATGCAAGTTGATAATGAGACTGCTCAATACTA
____________________________________________________________
consensus AAGGGTGATTGACTCCTTGAGGAGGAGCATGCAAGTTGATAATGAGACTGCTCAATACTA
. : . : . : . : . : . :
rJMFF024K10+ CTTGGCTGAGTCAAACGGTGATCCCCGAACAGCCATTGCTCAATTTGCTGAGGATTTTAG
rJMFF026P04+ CTTGGCTGAGTCAAACGGTGATCCCCGAACAGCCATTGCTCAATTTGCTGAGGATTTTAG
rJMFF051L21+ CTTGGCTGAGTCAAACGGTGATCCCCGAACAGCCATTGCTCAATTTGCTGAGGATTTTAG
____________________________________________________________
consensus CTTGGCTGAGTCAAACGGTGATCCCCGAACAGCCATTGCTCAATTTGCTGAGGATTTTAG
. : . : . : . : . : . :
rJMFF024K10+ GTGGGAGAGGCAGGTGGGGTTAGCTTAATTTGAATCAAACATCTTGTTTCGAATATGCAA
rJMFF026P04+ GTGGGAGAGGCAGGTGGGGTTAGCTTAATTTGAATCAAACATCTTGTTTCGAATATGCAA
rJMFF051G15+ TTGTTTGGAATATGCAA
rJMFF051L21+ GTGGGAGAGGCAGGTGGGGTTAGCTTAATTTGAATCAAACATCTTGTTTCGAATATGCAA
____________________________________________________________
consensus GTGGGAGAGGCAGGTGGGGTTAGCTTAATTTGAATCAAACATCTTGTTTCGAATATGCAA
. : . : . : . : . : . :
rJMFF024K10+ CCAAAAGAAGGGATGCATTGATATACCACGTGCTCGCCTATCATCTTCATCTGCATTTAT
rJMFF026P04+ CCAAAAGAAGGGATGCATTGATATACCACGTGCTCGCCTATCATCTTCATCTGCATTTAT
rJMFF051G15+ CCAAAAGAAGGGATGCATTGATATACCACGTGCTCGCCTATCATCTTCATCTGCATTTAT
rJMFF051L21+ CCAAAAGAAGGGATGCATTGATATACCACGTGCTCGCCTATCATCTTCATCTGCATTTAT
____________________________________________________________
consensus CCAAAAGAAGGGATGCATTGATATACCACGTGCTCGCCTATCATCTTCATCTGCATTTAT
. : . : . : . : . : . :
rJMFF024K10+ AGTAGACCGCATAATATTACCCTCATTTGAAGTAATGCTGGAAAACTCCCATGAAGAGGA
rJMFF026P04+ AGTAGACCGCATAATATTACCCTCATTTGAAGTAATGCTGGAAAACTCCCATGAAGAGGA
rJMFF051G15+ AGTAGACCGCATAATATTACCCTCATTTGAAGTAATGCTGGAAAACTCCCATGAAGAGGA
rJMFF051L21+ AGTAGACCGCATAATATTACCCTCATTTGAAGTAATGCTGGAAAACTCCCATGAAGAGGA
____________________________________________________________
consensus AGTAGACCGCATAATATTACCCTCATTTGAAGTAATGCTGGAAAACTCCCATGAAGAGGA
. : . : . : . : . : . :
rJMFF024K10+ AATGCCTGAAGCAATCAAAACTGCAGGCATATCTATCTTATGGTATTCTTGGCTGCTGGA
rJMFF026P04+ AATGCCTGAAGCAATCAAAACTGCAGGCATATCTATCTTATGGTATTCTTGGCTGCTGGA
rJMFF051G15+ AATGCCTGAAGCAATCAAAACTGCAGGCATATCTATCTTATGGTATTCGTGGCTGCTGGA
rJMFF051L21+ AATGCCTGAAGCAATCAAAACTGCAGGCATATCTATCTTATGGTATTCTTGGCTGCTGGA
____________________________________________________________
consensus AATGCCTGAAGCAATCAAAACTGCAGGCATATCTATCTTATGGTATTCTTGGCTGCTGGA
. : . : . : . : . : . :
rJMFF024K10+ TCAGCTTCCCTTAGGGACTTGTGGCGCTCTCAAATGTGTTTTATTTTCTGTATAGTGTGA
rJMFF026P04+ TCAGCTTCCCTTAGGGACTTGTGGCGCTCTCAAATGTGTTTTATTTT-TGTATAGTGTGA
rJMFF051G15+ TCAGCTTCCCTTAGGGACTTGTGGCGCTCTCAAATGTGTTTTATTTTCTGTATAGTGTGA
rJMFF051L21+ TCAGCTTCCCTTAGGGACTTGTGGCGCTCTCAAATGTGTTTTATTTT-TGTATAGTGTGA
____________________________________________________________
consensus TCAGCTTCCCTTAGGGACTTGTGGCGCTCTCAAATGTGTTTTATTTTCTGTATAGTGTGA
. : . : . : . : . : . :
rJMFF024K10+ TTTTAAATCATGGTTTTATTTTAAGCAAGTTGTAT
rJMFF026P04+ TTTTAAATCATGGTTTTATTTTAAGCAAGTTGTATTGAAGGGTGGAGCTGTATCAGTATC
rJMFF051G15+ TTTTAAATCATGGTTTTATTTTAAGCAAGTTGTATTGAAGGGTGGAGCTGTATCAGTATC
rJMFF051L21+ TTTTAAATCATGGTTTTATTTTAAGCAAGTTGTATTGAAGGGTGGAGCTGTATCAGTATC
____________________________________________________________
consensus TTTTAAATCATGGTTTTATTTTAAGCAAGTTGTATTGAAGGGTGGAGCTGTATCAGTATC
. : . : . : . : . : . :
rJMFF026P04+ ATGTGTAAAACTCCACAAGCATTAGATGTATGTGTGTACTGTAAGCAAATTATAGAAAAA
rJMFF051G15+ ATGTGTAAAACTCCACAAGCATTAGATGTATGTGTGTACTGTAAGCAAATTATAGAAAAA
rJMFF051L21+ ATGTGTAAAACTCCACAAGCATTAGATGTATGTGTGTACTGTAAGCAAATTATAGAAAAA
____________________________________________________________
consensus ATGTGTAAAACTCCACAAGCATTAGATGTATGTGTGTACTGTAAGCAAATTATAGAAAAA
. : . : . : . : . : . :
rJMFF026P04+ AAATCA
rJMFF051G15+ AAATCATTTTCAATTTTCAATGCATTATTCAAATCC
rJMFF051L21+ AAATCATTTTCAATTTTCAATGCATTATTCAAATCCAAAAAAAAAAAAAAAACTCTCCAG
____________________________________________________________
consensus AAATCATTTTCAATTTTCAATGCATTATTCAAATCCAAAAAAAAAAAAAAAACTCTCCAG