Contig 008408:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051J17Sequence642007702 (11)ref|XP_010655735.1|1e-82PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Vitis v565008408 (7)
JMFN032H14Sequence559008408 (7)
JMSF010D05Sequence285007702 (11)764008408 (7)
JMSF017A05Sequence344007702 (11)ref|XP_010098575.1|8e-20hypothetical protein L484_026017 [Morus notabilis] gb|EXB75235.1| hypothetical p816008408 (7)
JMSF027M02Sequence680007702 (11)ref|XP_010655735.1|7e-87PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Vitis v722008408 (7)
JMSF031P19Sequence561007702 (11)ref|XP_010655735.1|3e-47PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Vitis v775008408 (7)
JMSF036F03Sequence537007702 (11)ref|XP_010655735.1|3e-26PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Vitis v766008408 (7)

Alignment

This contig is upended


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rJMSF031P19+                                                                   CCC
rJMSF017A05+                                          AATACCATGGGACCAATGNTATNTGCCC
                      ____________________________________________________________
consensus                                             AATACCATGGGACCAATGNTATNTGCCC
 
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rJMSF010D05+               TAAAGATGAGCCAACTGCTGATGGAGACAATGATTT-GGCTGATACTGC-AACAT
rJMSF036F03+               TAAAGATGAGCCAACTGCTGATGGAGACAATGATTT-GGCTGATACTGC-AACAT
rJMSF031P19+          AGCAATAAAGATGAGCCAACTGCTGATGGAGACAATGATTTGGGCTGATACTGC-AACAT
rJMSF017A05+          AGCAATAAAGATGAGCCAACTGCTGATGGAGACAATGATTT-GGCTGATACTGCNAACAT
                      ____________________________________________________________
consensus             AGCAATAAAGATGAGCCAACTGCTGATGGAGACAATGATTT-GGCTGATACTGC-AACAT
 
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rJMSF010D05+          CTGGTCCATCTGAACCAAAACAATTCTCAGAGATTAGTTTGAGTGAGGAAGAGCAAAATC
rJMSF036F03+          CTGGTCCATCTGAACCAAAACAATTCTCAGAGATTAGTTTGAGTGAGGAAGAGCAAAATC
rJMSF031P19+          CTGGTCCATCTGAACCAAAACAATTCTCAGAGATTAGTTTGAGTGAGGAAGAGCAAAATC
rJMSF017A05+          CTGGTCCATCTGAACCAAAACAATTCTCAGAGATTAGTTTGAGTGAGGAAGAGCAAAATC
rJMSF027M02+                                  TCTCAGAGATTAGTTTGAGTGAGGAAGAGC-AAATC
                      ____________________________________________________________
consensus             CTGGTCCATCTGAACCAAAACAATTCTCAGAGATTAGTTTGAGTGAGGAAGAGCAAAATC
 
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rJMSF010D05+          CTAGACACACCAAGGGTGGAGAGGCTCCTGAATGGGTTGATTGGAGAGAAAGTTCTGGGC
rJMSF036F03+          CTAGACACACCAAGGGTGGAGAGGCTCCTGAATGGGTTGATTGGAGAGAAAGTTCTGGGC
rJMSF031P19+          CTAGACACACCAAGGGTGGAGAGGCTCCTGAATGGGTTGATTGGAGAGAAAGTTCTGGGC
rJMSF017A05+          CTAGACACACCAAGGGTGGAGAGGCTCCTGAATGGGTTGATTGGAGAGAAAGTTCTGGGC
rJMSF027M02+          CTAGACACACCAAGGGTGGAGAGGCTCCTGAATGGGTTGATTGGAGAGAAAGTTCTGGGC
                      ____________________________________________________________
consensus             CTAGACACACCAAGGGTGGAGAGGCTCCTGAATGGGTTGATTGGAGAGAAAGTTCTGGGC
 
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rJMSF010D05+          CAACTGATGTTACTGTAGATACACCTGAGCCTTCAACTCTGCCAAATGGTGAACTTCAAG
rJMSF036F03+          CAACTGATGTTACTGTAGATACACCTGAGCCTTCAACTCTGCCAAATGGTGAACTTCAAG
rJMSF031P19+          CAACTGATGTTACTGTAGATACACCTGAGCCTTCAACTCTGCCAAATGGTGAACTTCAAG
rJMSF017A05+          CAACTGATGTTACTGTAGATACACCTGAGCCTTCAACTCTGCCAAATGGTGAACTTCAAG
rJMSF027M02+          CAACTGATGTTACTGTAGATACACCTGAGCCTTCAACTCTGCCAAATGGTGAACTTCAAG
                      ____________________________________________________________
consensus             CAACTGATGTTACTGTAGATACACCTGAGCCTTCAACTCTGCCAAATGGTGAACTTCAAG
 
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rJMSF010D05+          TGGCTGAAGATAATGCCAACACCAAAACAACAGCTGATGCTCCTGTGTCTGCAAATAATG
rJMSF036F03+          TGGCTGAAGATAATGCCAACACCAAAACAACAGCTGATGCTCCTGTGTCTGCAAATAATG
rJMSF031P19+          TGGCTGAAGATAATGCCAACACCAAAACAACAGCTGATGCTCCTGTGTCTGCAAATAATG
rJMSF017A05+          TGGCTGAAGATAATGCCAACACCAAAACAACAGCTGATGCTCCTGTGTCTGCAAATAATG
rJMSF027M02+          TGGCTGAAGATAATGCCAACACCAAAACAACAGCTGATGCTCCTGTGTCTGCAAATAATG
JMFN032H14-                           CAACACCAAAACAACAGCTGATGCTCCTGTGTCTGCAAATAATG
rJMFF051J17+                                             GATGCTCCTGTGTCTGCAAATAATG
                      ____________________________________________________________
consensus             TGGCTGAAGATAATGCCAACACCAAAACAACAGCTGATGCTCCTGTGTCTGCAAATAATG
 
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rJMSF010D05+          ACAAAAGTAATGCTGAAGGAGGATCAGCTGATTTGGTGCATCCTCCTCCTGCTGCTGCTG
rJMSF036F03+          ACAAAAGTAATGCTGAAGGAGGATCAGCTGATTTGGTGCATCCTCCTCCTGCTGCTGCTG
rJMSF031P19+          ACAAAAGTAATGCTGAAGGAGGATCAGCTGATTTGGTGCATCCTCCTCCTGCTGCTGCTG
rJMSF017A05+          ACAAAAGTAATGCTGAAGGAGGATCAGCTGATTTGGTGCATCCTCCTCCTGCTGCTGCTG
rJMSF027M02+          ACAAAAGTAATGCTGAAGGAGGATCAGCTGATTTGGTGCATCCTCCTCCTGCTGCTGCTG
JMFN032H14-           ACAAAAGTAATGCTGAAGGAGGATCAGCTGATTTGGTGCATCCTCCTCCTGCTGCTGCTG
rJMFF051J17+          ACAAAAGTAATGCTGAAGGAGGATCAGCTGATTTGGTGCATCCTCCTCCTGCTGCTGCTG
                      ____________________________________________________________
consensus             ACAAAAGTAATGCTGAAGGAGGATCAGCTGATTTGGTGCATCCTCCTCCTGCTGCTGCTG
 
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rJMSF010D05+          CTGCTGCTGCTGCTGCAACCCCAACTCCAGAAACAGCAGAAGGGAACCCCCCAAGGTCTG
rJMSF036F03+          CTGCTGCTGCTGCTGCAACCCCAACTCCAGAAACAGCAGAAGGGAACCCCCCAAGGTCTG
rJMSF031P19+          CTGCTGCTGCTGCTGCAACCCCAACTCCAGAAACAGCAGAAGGGAACCCCCCAAGGTCTG
rJMSF017A05+          CTGCTGCTGCTGCTGCAACCCCAACTCCAGAAACAGCAGAAGGGAACCCCCCAAGGTCTG
rJMSF027M02+          CTGCTGCTGCTGCTGCAACCCCAACTCCAGAAACAGCAGAAGGGAACCCCCCAAGGTCTG
JMFN032H14-           CTGCTGCTGCTGCTGCAACCCCAACTCCAGAAACAGCAGAAGGGAACCCCCCAAGGTCTG
rJMFF051J17+          CTGCTGCTGCTGCTGCAACCCCAACTCCAGAAACAGCAGAAGGGAACCCCCCAAGGTCTG
                      ____________________________________________________________
consensus             CTGCTGCTGCTGCTGCAACCCCAACTCCAGAAACAGCAGAAGGGAACCCCCCAAGGTCTG
 
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rJMSF010D05+          GAAGCTCTGATGCTATTCCTGTCTAAATACTCTTACTACTATTACCTGTTGGAATGAAAG
rJMSF036F03+          GAAGCTCTGATGCTATTCCTGTCTAAATACTCTTACTACTATTACCTGTTGGAATGAAAG
rJMSF031P19+          GAAGCTCTGATGCTATTCCTGTCTAAATACTCTTACTACTATTACCTGTTGGAATGAAAG
rJMSF017A05+          GAAGCTCTGATGCTATTCCTGTCTAAATACTCTTACTACTATTACCTGTTGGAATGAAAG
rJMSF027M02+          GAAGCTCTGATGCTATTCCTGTCTAAATACTCTTACTACTATTACCTGTTGGAATGAAAG
JMFN032H14-           GAAGCTCTGATGCTATTCCTGTCTAAATACTCTTACTACTATTACCTGTTGGAATGAAAG
rJMFF051J17+          GAAGCTCTGATGCTATTCCTGTCTAAATACTCTTACTACTATTACCTGTTGGAATGAAAG
                      ____________________________________________________________
consensus             GAAGCTCTGATGCTATTCCTGTCTAAATACTCTTACTACTATTACCTGTTGGAATGAAAG
 
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rJMSF010D05+          GATGATCCTCAGGAGCTGAAGAGGGAAACTGATGTGCAGGAGTGCGTGCTATAAACAACT
rJMSF036F03+          GATGATCCTCAGGAGCTGAAGAGGGAAACTGATGTGCAGGAGTGCGTGCTATAAACAACT
rJMSF031P19+          GATGATCCTCAGGAGCTGAAGAGGGAAACTGATGTGCAGGAGTGCGTGCTATAAACAACT
rJMSF017A05+          GATGATCCTCAGGAGCTGAAGAGGGAAACTGATGTGCAGGAGTGCGTGCTATAAACAACT
rJMSF027M02+          GATGATCCTCAGGAGCTGAAGAGGGAAACTGATGTGCAGGAGTGCGTGCTATAAACAACT
JMFN032H14-           GATGATCCTCAGGAGCTGAAGAGGGAAACTGATGTGCAGGAGTGCGTGCTATAAACAACT
rJMFF051J17+          GATGATCCTCAGGAGCTGAAGAGGGAAACTGATGTGCAGGAGTGCGTGCTATAAACAACT
                      ____________________________________________________________
consensus             GATGATCCTCAGGAGCTGAAGAGGGAAACTGATGTGCAGGAGTGCGTGCTATAAACAACT
 
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rJMSF010D05+          CTCTGGTGCTAGTACTGTTGATCTGGTGCAATAACAAAGTGCGGACGGGGGGTTATTGTT
rJMSF036F03+          CTCTGGTGCTAGTACTGTTGATCTGGTGCAATAACAAAGTGCGGACGGGGGGTTATTGTT
rJMSF031P19+          CTCTGGTGCTAGTACTGTTGATCTGGTGCAATAACAAAGTGCGGACGGGGGGTTATTGTT
rJMSF017A05+          CTCTGGTGCTAGTACTGTTGATCTGGTGCAATAACAAAGTGCGGACGGGGGGTTATTGTT
rJMSF027M02+          CTCTGGTGCTAGTACTGTTGATCTGGTGCAATAACAAAGTGCGGACGGGGGGTTATTGTT
JMFN032H14-           CTCTGGTGCTAGTACTGTTGATCTGGTGCAATAACAAAGTGCGGACGGGGGGTTATTGTT
rJMFF051J17+          CTCTGGTGCTAGTACTGTTGATCTGGTGCAATAACAAAGTGCGGACGGGGGGTTATTGTT
                      ____________________________________________________________
consensus             CTCTGGTGCTAGTACTGTTGATCTGGTGCAATAACAAAGTGCGGACGGGGGGTTATTGTT
 
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rJMSF010D05+          CTGAGTGCTGATGATTCTTTTCCCGGGGTGGTGGTAGATAAACCGGTGTTCTATCTTCTT
rJMSF036F03+          CTGAGTGCTGATGATTCTTTTCCCGGGGTGGTGGTAGATAAACCGGTGTTCTATCTTCTT
rJMSF031P19+          CTGAGTGCTGATGATTCTTTTCCCGGGGTGGTGGTAGATAAACCGGTGTTCTATCTTCTT
rJMSF017A05+          CTGAGTGCTGATGATTCTTTTCCCGGGGTGGTGGTAGATAAACCGGTGTTCTATCTTCTT
rJMSF027M02+          CTGAGTGCTGATGATTCTTTTCCCGGGGTGGTGGTAGATAAACCGGTGTTCTATCTTCTT
JMFN032H14-           CTGAGTGCTGATGATTCTTTTCCCGGGGTGGTGGTAGATAAACCGGTGTTCTATCTTCTT
rJMFF051J17+          CTGAGTGCTGATGATTCTTTTCCCGGGGTGGTGGTAGATAAACCGGTGTTCTATCTTCTT
                      ____________________________________________________________
consensus             CTGAGTGCTGATGATTCTTTTCCCGGGGTGGTGGTAGATAAACCGGTGTTCTATCTTCTT
 
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rJMSF010D05+          TGATCTTACAGTCACTAGTGCAGATGACTTTTCACGCCTTGTTTTACTATTCATTTCAAG
rJMSF036F03+          TGATCTTACAGTCACTAGTGCAGATGACTTTTCACGCCTTGTTTTACTATTCATTTCAAG
rJMSF031P19+          TGATCTTACAGTCACTAGTGCAGATGACTTTTCACGCCTTGTTTTACTATTCATTTCAAG
rJMSF017A05+          TGATCTTACAGTCACTAGTGCAGATGACTTTTCACGCCTTGTTTTACTATTCATTTCAAG
rJMSF027M02+          TGATCTTACAGTCACTAGTGCAGATGACTTTTCACGCCTTGTTTTACTATTCATTTCAAG
JMFN032H14-           TGATCTTACAGTCACTAGTGCAGATGACTTTTCACGCCTTGTTTTACTATTCATTTCAAG
rJMFF051J17+          TGATCTTACAGTCACTAGTGCAGATGACTTTTCACGCCTTGTTTTACTATTCATTTCAAG
                      ____________________________________________________________
consensus             TGATCTTACAGTCACTAGTGCAGATGACTTTTCACGCCTTGTTTTACTATTCATTTCAAG
 
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rJMSF010D05+          CGTCACTGCTGGATTAGCATTTAGCAGACTGCTGTACACGT                   
rJMSF036F03+          CGTCACTGCTGGATTAGCATTTAGCAGACTGCTGTAC                       
rJMSF031P19+          CGTCACTGCTGGATTAGCATTTAGCAGACTGCTGTACACGT                   
rJMSF017A05+          CGTCACTGCTGGATTAGCATTTAGCAGACTGCTGTACACGTTCAAAGAATATTGTCTATA
rJMSF027M02+          CGTCACTGCTGGATTAGCATTTAGCAGACTGCTGTACACGTTCAAAGAATATTGTCTATA
JMFN032H14-           CGTCACTGCTGGATTAGCATTTAGCAGACTGCTGTACACGTTCAAAGAATATTGTCTATA
rJMFF051J17+          CGTCACTGCTGGATTAGCATTTAGCAGACTGCTGTACACGTTCAAAGAATATTGTCTATA
                      ____________________________________________________________
consensus             CGTCACTGCTGGATTAGCATTTAGCAGACTGCTGTACACGTTCAAAGAATATTGTCTATA
 
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rJMSF017A05+          TCTC                                                        
rJMSF027M02+          TCTCATAGTTTTTCTTTCCTGCTCCAT                                 
JMFN032H14-           TCTCATAGTTTTTCTTTCCTGCTCCATTTCACTTC                         
rJMFF051J17+          TCTCATAGTTTTTCTTTCCTGCTCCATTTCACTTCACAAATGAATGCCATTCCTATCAAG
                      ____________________________________________________________
consensus             TCTCATAGTTTTTCTTTCCTGCTCCATTTCACTTCACAAATGAATGCCATTCCTATCAAG