Contig 008407:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013O22Sequence568008407 (5)emb|CDP14242.1|8e-58unnamed protein product [Coffea canephora]758008407 (5)emb|CDP14242.1|7e-57unnamed protein product [Coffea canephora]
JMFF042C22Sequence628012937 (2)619008407 (5)emb|CDP14242.1|9e-51unnamed protein product [Coffea canephora]
JMFF051I12Sequence640008407 (5)emb|CDP14242.1|2e-57unnamed protein product [Coffea canephora]590008407 (5)emb|CDP14242.1|3e-05unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF042C22+                                       TATAGCTTTGGTGTTGTCCTGTGGGAGCTGA
JMFF013O22-                                              TTTGGTGTTGTCCTGTGGGAGCTGA
JMFF051I12-                                              TTTGGTGTTGTCCTGTGGGAGCTGA
rJMFF013O22+                                             TTTGGTGTTGTCCTGTGGGAGCTGA
                      ____________________________________________________________
consensus                                          TATAGCTTTGGTGTTGTCCTGTGGGAGCTGA
 
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rJMFF042C22+          TCACTGGGATGCTTCCCTTCCAGAACATGACTGCTGTGCAGGCGGCTTTTGCTGTTGTAA
JMFF013O22-           TCACTGGGATGCTTCCCTTCCAGAACATGACTGCTGTGCAGGCGGCTTTTGCTGTTGTAA
JMFF051I12-           TCACTGGGATGCTTCCCTTCCAGAACATGACTGCTGTGCAGGCGGCTTTTGCTGTTGTAA
rJMFF013O22+          TCACTGGGATGCTTCCCTTCCAGAACATGACTGCTGTGCAGGCGGCTTTTGCTGTTGTAA
                      ____________________________________________________________
consensus             TCACTGGGATGCTTCCCTTCCAGAACATGACTGCTGTGCAGGCGGCTTTTGCTGTTGTAA
 
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rJMFF042C22+          ACAAAGGTGTCCGCCCGACAATACCGAACGATTGTTTGCCCGTCCTGGCTGAGATCATGA
JMFF013O22-           ACAAAGGTGTCCGCCCGACAATACCGAACGATTGTTTGCCCGTCCTGGCTGAGATCATGA
JMFF051I12-           ACAAAGGTGTCCGCCCGACAATACCGAACGATTGTTTGCCCGTCCTGGCTGAGATCATGA
rJMFF013O22+          ACAAAGGTGTCCGCCCGACAATACCGAACGATTGTTTGCCCGTCCTGGCTGAGATCATGA
                      ____________________________________________________________
consensus             ACAAAGGTGTCCGCCCGACAATACCGAACGATTGTTTGCCCGTCCTGGCTGAGATCATGA
 
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rJMFF042C22+          GCCGCTGCTGGGATCCTAATCCTGATGTTAGGCCCCCCTTCTCCGAGGTGGTCAGAATGC
JMFF013O22-           GCCGCTGCTGGGATCCTAATCCTGATGTTAGGCCCCCCTTCTCCGAGGTGGTCAGAATGC
JMFF051I12-           GCCGCTGCTGGGATCCTAATCCTGATGTTAGGCCCCCCTTCTCCGAGGTGGTCAGAATGC
rJMFF013O22+          GCCGCTGCTGGGATCCTAATCCTGATGTTAGGCCCCCCTTCTCCGAGGTGGTCAGAATGC
                      ____________________________________________________________
consensus             GCCGCTGCTGGGATCCTAATCCTGATGTTAGGCCCCCCTTCTCCGAGGTGGTCAGAATGC
 
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rJMFF042C22+          TGGAGGCTGCCGAAACAGAGATCATGACAACTGTGAGGAAGGCGCGTTTCAGATGCTGCA
JMFF013O22-           TGGAGGCTGCCGAAACAGAGATCATGACAACTGTGAGGAAGGCGCGTTTCAGATGCTGCA
JMFF051I12-           TGGAGGCTGCCGAAACAGAGATCATGACAACTGTGAGGAAGGCGCGTTTCAGATGCTGCA
rJMFF013O22+          TGGAGGCTGCCGAAACAGAGATCATGACAACTGTGAGGAAGGCGCGTTTCAGATGCTGCA
rJMFF051I12+                    CGAAACAGAGATCATGACAACTGTGAGGAAGGCGCGTTTCAGATGCTGCA
                      ____________________________________________________________
consensus             TGGAGGCTGCCGAAACAGAGATCATGACAACTGTGAGGAAGGCGCGTTTCAGATGCTGCA
 
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rJMFF042C22+          TGACCCCACCGATGACTATGGACTGATGAAGAACAGGAGAAATTAGAAGCAGAATGGAGA
JMFF013O22-           TGACCCAACCGATGACTATGGACTGATGAAGAACAGGAGAAATTAGAAGCAGAATGGAGA
JMFF051I12-           TGACCCAACCGATGACTATGGACTGATGAAGAACAGGAGAAATTAGAAGCAGAATGGAGA
rJMFF013O22+          TGACCCAACCGATGACTATGGACTGATGAAGAACAGGAGAAATTAGAAGCAGAATGGAGA
rJMFF051I12+          TGACCCAACCGATGACTATGGACTGATGAAGAACAGGAGAAATTAGAAGCAGAATGGAGA
                      ____________________________________________________________
consensus             TGACCCAACCGATGACTATGGACTGATGAAGAACAGGAGAAATTAGAAGCAGAATGGAGA
 
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rJMFF042C22+          TAAAAGGCGGCGAGAGGAAAGCTGATTCTAAGTTGTGTATGCATTCGGGCATATCATTTC
JMFF013O22-           TAAAAGGCGGCGAGAGGAAAGCTGATTCTAAGTTGTGTATGCATTCGGGCATATCATTTC
JMFF051I12-           TAAAAGGCGGCGAGAGGAAAGCTGATTCTAAGTTGTGTATGCATTCGGGCATATCATTTC
rJMFF013O22+          TAAAAGGCGGCGAGAGGAAAGCTGATTCTAAGTTGTGTATGCATTCGGGCATATCATTTC
rJMFF051I12+          TAAAAGGCGGCGAGAGGAAAGCTGATTCTAAGTTGTGTATGCATTCGGGCATATCATTTC
                      ____________________________________________________________
consensus             TAAAAGGCGGCGAGAGGAAAGCTGATTCTAAGTTGTGTATGCATTCGGGCATATCATTTC
 
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rJMFF042C22+          TTTATTCAGATAGAAGAAAGGGGAAGAAAGTTATGATGATGATAAGAACTGCTTGTTTTG
JMFF013O22-           TTTATTCAGATAGAAGAAAGGGGAAGAAAGTTATGATGATGATAAGAACTGCTTGTTTTG
JMFF051I12-           TTTATTCAGATAGAAGAAAGGGGAAGAAAGTTATGATGATGATAAGAACTGCTTGTTTTG
rJMFF013O22+          TTTATTCAGATAGAAGAAAGGGGAAGAAAGTTATGATGATGATAAGAACTGCTTGTTTTG
rJMFF051I12+          TTTATTCAGATAGAAGAAAGGGGAAGAAAGTTATGATGATGATAAGAACTGCTTGTTTTG
                      ____________________________________________________________
consensus             TTTATTCAGATAGAAGAAAGGGGAAGAAAGTTATGATGATGATAAGAACTGCTTGTTTTG
 
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rJMFF042C22+          TGTTTCGTTTTGATGGATTTAAGAACAATGCTGATTAGTGGTAATAGGGAGGCTTGATAT
JMFF013O22-           TGTTTCGTTTTGATGGATTTAAGAACAATGCTGATTAGTGGTAATAGGGAGGCTTGATAT
JMFF051I12-           TGTTTCGTTTTGATGGATTTAAGAACAATGCTGATTAGTGGTAATAGGGAGGCTTGATAT
rJMFF013O22+          TGTTTCGTTTTGATGGATTTAAGAACAATGCTGATTAGTGGTAATAGGGAGGCTTGATAT
rJMFF051I12+          TGTTTCGTTTTGATGGATTTAAGAACAATGCTGATTAGTGGTAATAGGGAGGCTTGATAT
                      ____________________________________________________________
consensus             TGTTTCGTTTTGATGGATTTAAGAACAATGCTGATTAGTGGTAATAGGGAGGCTTGATAT
 
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rJMFF042C22+          GTATCTATACATGTCCTTTGTTGATGTGATTAAACCTGCTCTGTTTAGTTGTTTGACTTT
JMFF013O22-           GTATCTATACATGTCCTTTGTTGATGTGATTAAACCTGCTCTGTTTAGTTGTTTGACTTT
JMFF051I12-           GTATCTATACATGTCCTTTGTTGATGTGATTAAACCTGCTCTGTTTAGTTGTTTGACTTT
rJMFF013O22+          GTATCTATACATGTCCTTTGTTGATGTGATTAAACCTGCTCTGTTTAGTTGTTTGACTTT
rJMFF051I12+          GTATCTATACATGTCCTTTGTTGATGTGATTAAACCTGCTCTGTTTAGTTGTTTGACTTT
                      ____________________________________________________________
consensus             GTATCTATACATGTCCTTTGTTGATGTGATTAAACCTGCTCTGTTTAGTTGTTTGACTTT
 
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rJMFF042C22+          CATCAGAATCTGAATATAGCAGGGCTTGAAGGTCCTTGCATAATGC              
JMFF013O22-           CA                                                          
JMFF051I12-           CATCAGAATCTGAATATAGCAGGGCTTGAAGGTCCTTGCATAATGCTCACCTGCCATCTT
rJMFF013O22+          CATCAGAATCTGAATATAGCAGGGCTTGAAGGTCCTTGCATAATGCTCACCTGCCATCTT
rJMFF051I12+          CATCAGAATCTGAATATAGCAGGGCTTGAAGGTCCTTGCATAATGCTCACCTGCCATCTT
                      ____________________________________________________________
consensus             CATCAGAATCTGAATATAGCAGGGCTTGAAGGTCCTTGCATAATGCTCACCTGCCATCTT
 
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JMFF051I12-           TACTTTTACCTCAT                                              
rJMFF013O22+          TACTTTTACCTCATCTCCCAGTATTCCTGTCCTGTCCTTCATTTTACCCTGAAATGCACT
rJMFF051I12+          TACTTTTACCTCATCTCCCAGTATTCCTGTCCTGTCCTTCATTTTACCCTGAAATGCACT
                      ____________________________________________________________
consensus             TACTTTTACCTCATCTCCCAGTATTCCTGTCCTGTCCTTCATTTTACCCTGAAATGCACT
 
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rJMFF013O22+          CAACTCCTTCTAGTCAACTCCTTCTAGTCTTCCATTGTTTTACCACAAAAACACTTTTGT
rJMFF051I12+          CAACTCCTTCTAGTCAACTCCTTCTAGTCTTCCATTGTTTTACCACAAAAACACTTTTGT
                      ____________________________________________________________
consensus             CAACTCCTTCTAGTCAACTCCTTCTAGTCTTCCATTGTTTTACCACAAAAACACTTTTGT
 
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rJMFF013O22+          ATACGAAATCAT                                                
rJMFF051I12+          ATACGAAATCATAGTTATTTCTTATGATXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGT
                      ____________________________________________________________
consensus             ATACGAAATCATAGTTATTTCTTATGATNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGT