| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002O04 | Sequence | 399 | 000115 (9) | 721 | 008402 (5) | ref|XP_006342510.1| | 3e-27 | PREDICTED: protein EARLY FLOWERING 3-like [Solanum tuberosum] | |||
| JMFF021I24 | Sequence | 522 | 000115 (9) | 247 | 008402 (5) | ||||||
| JMFF023A13 | Sequence | 530 | 008402 (5) | ref|XP_006342510.1| | 2e-23 | PREDICTED: protein EARLY FLOWERING 3-like [Solanum tuberosum] | |||||
| JMFF051D17 | Sequence | 624 | 000115 (9) | gb|KDP34132.1| | 6e-13 | hypothetical protein JCGZ_07703 [Jatropha curcas] | 551 | 008402 (5) | ref|XP_006342510.1| | 4e-23 | PREDICTED: protein EARLY FLOWERING 3-like [Solanum tuberosum] |
| JMFF051P21 | Sequence | 624 | 000115 (9) | ref|XP_006342510.1| | 1e-06 | PREDICTED: protein EARLY FLOWERING 3-like [Solanum tuberosum] | 558 | 008402 (5) | ref|XP_006342510.1| | 4e-24 | PREDICTED: protein EARLY FLOWERING 3-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMFF002O04+ AC
____________________________________________________________
consensus AC
. : . : . : . : . : . :
rJMFF002O04+ TAAAGATGCAAAGCACACAAGGGGAAGAAATTTGAGACATCAGGAGAGCTCAAGACAGCT
____________________________________________________________
consensus TAAAGATGCAAAGCACACAAGGGGAAGAAATTTGAGACATCAGGAGAGCTCAAGACAGCT
. : . : . : . : . : . :
rJMFF002O04+ TCCTGCAACCAGAGAGCAGTCTGTTAAAGCTTCCTTGAGTTCTCGATCCACAGATAAGAA
____________________________________________________________
consensus TCCTGCAACCAGAGAGCAGTCTGTTAAAGCTTCCTTGAGTTCTCGATCCACAGATAAGAA
. : . : . : . : . : . :
rJMFF023A13+ CTTGCATTNTGAACAGAGAGATGG
rJMFF002O04+ AGAACATTGTATAAAGCATACTGATACGGATTTTCCCTTGCATTCTGAACAGAGAGATGG
____________________________________________________________
consensus AGAACATTGTATAAAGCATACTGATACGGATTTTCCCTTGCATTCTGAACAGAGAGATGG
. : . : . : . : . : . :
rJMFF023A13+ CCCTGCAAATAATTNTGACNTGTCACATAAGAGTGGCATAAACCTACAACCAGAAAGCAT
rJMFF002O04+ CCCTGCAAATAATTCTGACCTGTCACATAAGAGTGGCATAAACCTACAACCAGAAAGCAT
rJMFF051P21+ CCTGCAAATAATTCTGACCTGTCACATAAGAGTGGCATAAACCTACAACCAGAAAGCAT
rJMFF051D17+ CCAGAAAGCAT
____________________________________________________________
consensus CCCTGCAAATAATTCTGACCTGTCACATAAGAGTGGCATAAACCTACAACCAGAAAGCAT
. : . : . : . : . : . :
rJMFF023A13+ AATNGATTNTAAAGTTGGTGACGCTAATGATGATGCTGTTGTGAGTGGGCCTATTAAGGG
rJMFF002O04+ AATTGATTCTAAAGTTGGTGACGCTAATGATGATGCTGTTGTGAGTGGGCCTATTAAGGG
rJMFF051P21+ AATTGATTCTAAAGTTGGTGACGCTAATGATGATGCTGTTGTGAGTGGGCCTATTAAGGG
rJMFF051D17+ AATTGATTCTAAAGTTGGTGACGCTAATGATGATGCTGTTGTGAGTGGGCCTATTAAGGG
____________________________________________________________
consensus AATTGATTCTAAAGTTGGTGACGCTAATGATGATGCTGTTGTGAGTGGGCCTATTAAGGG
. : . : . : . : . : . :
rJMFF023A13+ TGTGGAAATTGGAGATTCTTCTGTCCCAATCAATTGTTTTCAAACAGAAGGGCAGATTAT
rJMFF002O04+ TGTGGAAATTGGAGATTCTTCTGTCCCAATCAATTGTTTTCAAACAGAAGGGCAGATTAT
rJMFF051P21+ TGTGGAAATTGGAGATTCTTCTGTCCCAATCAATTGTTTTCAAACAGAAGGGCAGATTAT
rJMFF051D17+ TGTGGAAATTGGAGATTCTTCTGTCCCAATCAATTGTTTTCAAACAGAAGGGCAGATTAT
____________________________________________________________
consensus TGTGGAAATTGGAGATTCTTCTGTCCCAATCAATTGTTTTCAAACAGAAGGGCAGATTAT
. : . : . : . : . : . :
rJMFF023A13+ TAATGTTGGTAATGATGTGGAGTCTCAGGAAAACCAGACATGTAGATCACCACAAACACA
rJMFF002O04+ TAATGTTGGTAATGATGTGGAGTCTCAGGAAAACCAGACATGTAGATCACCACAAACACA
rJMFF051P21+ TAATGTTGGTAATGATGTGGAGTCTCAGGAAAACCAGACATGTAGATCACCACAAACACA
rJMFF051D17+ TAATGTTGGTAATGATGTGGAGTCTCAGGAAAACCAGACATGTAGATCACCACAAACACA
____________________________________________________________
consensus TAATGTTGGTAATGATGTGGAGTCTCAGGAAAACCAGACATGTAGATCACCACAAACACA
. : . : . : . : . : . :
rJMFF023A13+ AAAAGTTGATAGAGGAGACAACTCATNTGAGACTTCCATGGTGGAATGTATATCTGGAAT
rJMFF002O04+ AAAAGTTGATAGAGGAGACAACTCATCTGAGACTTCCATGGTGGAATGTATATCTGGAAT
rJMFF021I24+ GGTGGAATGTATATNTGGAAT
rJMFF051P21+ AAAAGTTGATAGAGGAGACAACTCATCTGAGACTTCCATGGTGGAATGTATATCTGGAAT
rJMFF051D17+ AAAAGTTGATAGAGGAGACAACTCATCTGAGACTTCCATGGTGGAATGTATATCTGGAAT
____________________________________________________________
consensus AAAAGTTGATAGAGGAGACAACTCATCTGAGACTTCCATGGTGGAATGTATATCTGGAAT
. : . : . : . : . : . :
rJMFF023A13+ GGACATATCGCCCGATGATGTAGTTGGAATAATTGGCCAAAAACATTTTTGGAAAGCCAG
rJMFF002O04+ GGACATATCGCCCGATGATGTAGTTGGAATAATTGGCCAAAAACATTTTTGGAAAGCCAG
rJMFF021I24+ GGNCATATCGNNCGANGATGTAGTTGGAATAANTGGCCAAAANCATTNTNGGAAAGCCAG
rJMFF051P21+ GGACATATCGCCCGATGATGTAGTTGGAATAATTGGCCAAAAACATTTTTGGAAAGCCAG
rJMFF051D17+ GGACATATCGCCCGATGATGTAGTTGGAATAATTGGCCAAAAACATTTTTGGAAAGCCAG
____________________________________________________________
consensus GGACATATCGCCCGATGATGTAGTTGGAATAATTGGCCAAAAACATTTTTGGAAAGCCAG
. : . : . : . : . : . :
rJMFF023A13+ AAGAGCTATTGTCAAGTAAGTTCATTCTTGGATTTTTGAGTCTCACTCTTTAGGCTTCAT
rJMFF002O04+ AAGAGCTATTGTCAAGTAAGTTCATTCTTGGATTTTTGAGTCTCACTCTTTAGGCTTCAT
rJMFF021I24+ AAGAGCTATTGTCAAGTAAGTTCATTCTTGGATTTTTGAGTCTCACTCTTTAGGCTTCAT
rJMFF051P21+ AAGAGCTATTGTCAAGTAAGTTCATTCTTGGATTTTTGAGTCTCACTCTTTAGGCTTCAT
rJMFF051D17+ AAGAGCTATTGTCAAGTAAGTTCATTCTTGGATTTTTGAGTCTCACTCTTTAGGCTTCAT
____________________________________________________________
consensus AAGAGCTATTGTCAAGTAAGTTCATTCTTGGATTTTTGAGTCTCACTCTTTAGGCTTCAT
. : . : . : . : . : . :
rJMFF023A13+ ATGTTCTATTCTAATTCCCTGTGTTTCTATAGGATCAATATGTATTTTCTTTCATTTACT
rJMFF002O04+ ATGTTCTATTCTAATTCCCTGTGTTTCTATAGGATCAATATGTATTTTCTTTCATTTACT
rJMFF021I24+ ATGTTCTATTCTAATTCCCTGTGTTTCTATAGGATCAATATGTATTTTCTTTCATTTACT
rJMFF051P21+ ATGTTCTATTCTAATTCCCTGTGTTTCTATAGGATCAATATGTATTTTCTTTCATTTACT
rJMFF051D17+ ATGTTCTATTCTAATTCCCTGTGTTTCTATAGGATCAATATGTATTTTCTTTCATTTACT
____________________________________________________________
consensus ATGTTCTATTCTAATTCCCTGTGTTTCTATAGGATCAATATGTATTTTCTTTCATTTACT
. : . : . : . : . : . :
rJMFF023A13+ TGTGAGCTTAATATTATACAGTGCAC
rJMFF002O04+ TGTGAGCTTAATATTATACAGTGCACATTTATGTTCTTGATTCCATTTTTTAATAATCA
rJMFF021I24+ TGTGAGCTTAATATTATACAGTGCACATTTATGTTCTTGATTCC
rJMFF051P21+ TGTGAGCTTAATATTATACAGTGCACATTTATGTTCTTGATTCCATTTTTTAATAATCAT
rJMFF051D17+ TGTGAGCTTAATATTATACAGTGCACATTTATGTTCTTGATTCCATTTTTTAATAATCAT
____________________________________________________________
consensus TGTGAGCTTAATATTATACAGTGCACATTTATGTTCTTGATTCCATTTTTTAATAATCAT
. : . : . : . : . : . :
rJMFF051P21+ GATATAATTAGAAAATGAT
rJMFF051D17+ GATATAATTAGAAAATGATAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus GATATAATTAGAAAATGATAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG