Contig 008399:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051A03Sequence618008399 (3)ref|XP_006344609.1|240PREDICTED: uncharacterized protein LOC102583271 [Solanum tuberosum]505008399 (3)ref|XP_006842603.1|4e-06hypothetical protein AMTR_s00077p00169380 [Amborella trichopoda] gb|ERN04278.1|
JMSF044H17Sequence751016866ref|XP_009613519.1|2e-32PREDICTED: E3 ubiquitin-protein ligase Praja-2 [Nicotiana tomentosiformis] ref|X719008399 (3)ref|XP_006344609.1|152PREDICTED: uncharacterized protein LOC102583271 [Solanum tuberosum]

Alignment

This contig is upended


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JMFF051A03-                                     GAATTGGAGCTACACGCTAATTTTGTGGATGCAG
                      ____________________________________________________________
consensus                                       GAATTGGAGCTACACGCTAATTTTGTGGATGCAG
 
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JMFF051A03-           ACTATCTAGATGCCCGAGGGCTTGATGAATTGGTCGAGCATCTTGCTGAAACTGATGGTT
                      ____________________________________________________________
consensus             ACTATCTAGATGCCCGAGGGCTTGATGAATTGGTCGAGCATCTTGCTGAAACTGATGGTT
 
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JMFF051A03-           TTAGAAGAGGAGCACCACCTGCAGCAGTCTCCGTTGTAAACAGTTTGCCACGTATAGTTA
                      ____________________________________________________________
consensus             TTAGAAGAGGAGCACCACCTGCAGCAGTCTCCGTTGTAAACAGTTTGCCACGTATAGTTA
 
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JMFF051A03-           TTAAAGATCACAAGCAGCTTGATGACTTGGCTTGTGCAGTATGCAAAGATTCTCTATTTG
                      ____________________________________________________________
consensus             TTAAAGATCACAAGCAGCTTGATGACTTGGCTTGTGCAGTATGCAAAGATTCTCTATTTG
 
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JMFF051A03-           TAGGAACTGTTGTAAACCAACTTCCTTGTTCTCATGTTTATCACCCTTCATGTATCTTGC
rJMSF044H17+                                               TTATCACCCTTCATGTATCTTGC
                      ____________________________________________________________
consensus             TAGGAACTGTTGTAAACCAACTTCCTTGTTCTCATGTTTATCACCCTTCATGTATCTTGC
 
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JMFF051A03-           CATGGTTAAGTTCAAGGAACACCTGTCCCCTTTGCCGATATGAGCTTCCAACCGATGATC
rJMSF044H17+          CATGGTTAAGTTCAAGGAACACCTGTCCCCTTTGCCGATATGAGCTTCCAACCGATGATC
                      ____________________________________________________________
consensus             CATGGTTAAGTTCAAGGAACACCTGTCCCCTTTGCCGATATGAGCTTCCAACCGATGATC
 
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JMFF051A03-           AAGATTACGAGGACAGAAAACTGAGGAATGGAAACGAGTTTGCGATTCGTGAAACTCAGC
rJMSF044H17+          AAGATTACGAGGACAGAAAACTGAGGAATGGAAACGAGTTTGCGATTCGTGAAACTCAGC
                      ____________________________________________________________
consensus             AAGATTACGAGGACAGAAAACTGAGGAATGGAAACGAGTTTGCGATTCGTGAAACTCAGC
 
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JMFF051A03-           AGCACGACATGAACGAGGGCAGTTCCTCAGACGATACTGAAGCAATGGAACCTCGTGAAT
rJMSF044H17+          AGCACGACATGAACGAGGGCAGTTCCTCAGACGATACTGAAGCAATGGAACCTCGTGAAT
                      ____________________________________________________________
consensus             AGCACGACATGAACGAGGGCAGTTCCTCAGACGATACTGAAGCAATGGAACCTCGTGAAT
 
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JMFF051A03-           TTGGTCGTGGAAGAACAGAGCAAGGGGAAGTCACGAGTATGAGTGGATCCAGCACCCAAA
rJMSF044H17+          TTGGTCGTGGAAGAACAGAGCAAGGGGAAGTCACGAGTATGAGTGGATCCAGCACCCAAA
rJMFF051A03+                                            GAGTATGAGTGGATCCAGCACCCAAA
                      ____________________________________________________________
consensus             TTGGTCGTGGAAGAACAGAGCAAGGGGAAGTCACGAGTATGAGTGGATCCAGCACCCAAA
 
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JMFF051A03-           CTGCCCGGGGGAGATGGTTTTTTCTAGCTGCTGCAGCACCCGTTATTAGTGTTGTCGGTA
rJMSF044H17+          CTGCCCGGGGGAGATGGTTTTTTCTAGCTGCTGCAGCACCCGTTATTAGTGTTGTCGGTA
rJMFF051A03+          CTGCCCGGGGGAGAT-GTTTTTTCTAGCTGCTGCAGCACCCGTTATTAGTGTTGTCGGTA
                      ____________________________________________________________
consensus             CTGCCCGGGGGAGATGGTTTTTTCTAGCTGCTGCAGCACCCGTTATTAGTGTTGTCGGTA
 
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JMFF051A03-           TTGCCATTGCGTTGTGGTTTGGCAACCCATTGACAGAGCAGAGT                
rJMSF044H17+          TTGCCATTGCGTTGTGGTTTGGCAACCCATTGACAGAGCAGAGTAGGTCAAGCATCCTTC
rJMFF051A03+          TTGCCATTGCGTTGTGGTTTGGCAACCCATTGACAGAGCAGAGTAGGTCAAGCATCCTTC
                      ____________________________________________________________
consensus             TTGCCATTGCGTTGTGGTTTGGCAACCCATTGACAGAGCAGAGTAGGTCAAGCATCCTTC
 
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rJMSF044H17+          GAGCATTGTGTCCTCACAGAGAGCCTTCAAATCATGCTCCCCATTCACAAAGAGTGAACA
rJMFF051A03+          GAGCATTGTGTCCTCACAGAGAGCCTTCAAATCATGCTCCCCATTCACAAAGAGTGAACA
                      ____________________________________________________________
consensus             GAGCATTGTGTCCTCACAGAGAGCCTTCAAATCATGCTCCCCATTCACAAAGAGTGAACA
 
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rJMSF044H17+          ACCGAGAAAGGAGATGGTGGTCTCCGTTTTAGCGTCCTCTATAATAGCTCAGTTCATACT
rJMFF051A03+          ACCGAGAAAGGAGATGGTGGTCTCCGTTTTAGCGTCCTCTATAATAGCTCAGTTCATACT
                      ____________________________________________________________
consensus             ACCGAGAAAGGAGATGGTGGTCTCCGTTTTAGCGTCCTCTATAATAGCTCAGTTCATACT
 
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rJMSF044H17+          CCGAATTTGATTACTCCAAGTCACCCATCTGTTTTAGGCAAATCCACGAAGTTTGGCCTC
rJMFF051A03+          CCGAATTTGATTACTCCAAGTCACCCATCTGTTTTAGGCAAATCCACGAAGTTTGGCCTC
                      ____________________________________________________________
consensus             CCGAATTTGATTACTCCAAGTCACCCATCTGTTTTAGGCAAATCCACGAAGTTTGGCCTC
 
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rJMSF044H17+          CTTTTTTTGCGTGTTGCCCTTTCCACTTTTCCAGTAAGTCCAGGTATTGGGTTGTGTTGT
rJMFF051A03+          CTTTTTTTGCGTGTTGCCCTTTCCACTTTTCCAGTAAGTCCAGGTATTGGGTTGTGTTGT
                      ____________________________________________________________
consensus             CTTTTTTTGCGTGTTGCCCTTTCCACTTTTCCAGTAAGTCCAGGTATTGGGTTGTGTTGT
 
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rJMSF044H17+          GTTATGTGTTGATTGCATAGGCAAATTTAAGGCATAAGTGAAGGCAACTGTTGTTGATTT
rJMFF051A03+          GTTATGTGTTGATTGCATAGGCAAATTTAAGGCATAAGTGAAGGCAACTGTTGTTGATTT
                      ____________________________________________________________
consensus             GTTATGTGTTGATTGCATAGGCAAATTTAAGGCATAAGTGAAGGCAACTGTTGTTGATTT
 
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rJMSF044H17+          TCTGACATGTATTGATTTCTGATCACATT                               
rJMFF051A03+          TCTGACATGTATTGATTTCTGATCACATTAATAACAATGTCAGCTGGCTATTTTGGTGAG
                      ____________________________________________________________
consensus             TCTGACATGTATTGATTTCTGATCACATTAATAACAATGTCAGCTGGCTATTTTGGTGAG