| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021H02 | Sequence | 572 | 008389 (6) | ref|XP_002521950.1| | 3e-53 | synovial sarcoma associated ss18 protein, putative [Ricinus communis] gb|EEF4035 | 682 | 008389 (6) | ref|XP_002521950.1| | 1e-08 | synovial sarcoma associated ss18 protein, putative [Ricinus communis] gb|EEF4035 |
| JMFF029G20 | Sequence | 491 | 008389 (6) | ref|XP_002521950.1| | 7e-54 | synovial sarcoma associated ss18 protein, putative [Ricinus communis] gb|EEF4035 | 770 | 008389 (6) | ref|XP_002521950.1| | 9e-26 | synovial sarcoma associated ss18 protein, putative [Ricinus communis] gb|EEF4035 |
| JMFF050E07 | Sequence | 639 | 008389 (6) | ref|XP_010694809.1| | 2e-53 | PREDICTED: GRF1-interacting factor 1 [Beta vulgaris subsp. vulgaris] | 580 | 008389 (6) | |||
This contig is upended
. : . : . : . : . : . :
JMFF029G20- AGATGCAGCCCATGATGGCAGCTTACTATCCCACCACCGTCACCACTGACCA
JMFF021H02- AGATGCAGCCCATGATGGCAGCTTACTATCCCACCACCGTCACCACTGACCA
JMFF050E07- AGATGCAGCCCATGATGGCAGCTTACTATCCCACCACCGTCACCACTGACCA
____________________________________________________________
consensus AGATGCAGCCCATGATGGCAGCTTACTATCCCACCACCGTCACCACTGACCA
. : . : . : . : . : . :
JMFF029G20- TATTCAACAGTATCTGGATGAGAACAAATCACTGATTCTGAAGATTGTTGAGAGCCAGAA
JMFF021H02- TATTCAACAGTATCTGGATGAGAACAAATCACTGATTCTGAAGATTGTTGAGAGCCAGAA
JMFF050E07- TATTCAACAGTATCTGGATGAGAACAAATCACTGATTCTGAAGATTGTTGAGAGCCAGAA
rJMFF029G20+ TGGATGAGAACAAATCACTGATTCTGAAGATTGTTGAGAGCCAGAA
____________________________________________________________
consensus TATTCAACAGTATCTGGATGAGAACAAATCACTGATTCTGAAGATTGTTGAGAGCCAGAA
. : . : . : . : . : . :
JMFF029G20- CTCTGGGAAACTGAACGAGTGTGCTGAGAACCAAGCCAGGCTTCAGCGTAACCTGATGTA
JMFF021H02- CTCTGGGAAACTGAACGAGTGTGCTGAGAACCAAGCCAGGCTTCAGCGTAACCTGATGTA
JMFF050E07- CTCTGGGAAACTGAACGAGTGTGCTGAGAACCAAGCCAGGCTTCAGCGTAACCTGATGTA
rJMFF021H02+ CTTCAGCGTAACCTGATGTA
rJMFF029G20+ CTCTGGGAAACTGAACGAGTGTGCTGAGAACCAAGCCAGGCTTCAGCGTAACCTGATGTA
____________________________________________________________
consensus CTCTGGGAAACTGAACGAGTGTGCTGAGAACCAAGCCAGGCTTCAGCGTAACCTGATGTA
. : . : . : . : . : . :
JMFF029G20- TCTGGCCGCCATTGCTGATTCGCAGCCACAACCTCCC-AGCATGCATTCTCAGTTCACTT
JMFF021H02- TCTGGCCGCCATTGCTGATTCGCAGCCACAACCTCCC-AGCATGCATTCTCAGTTCACTT
JMFF050E07- TCTGGCCGCCATTGCTGATTCGCAGCCACAACCTCCC-AGCATGCATTCTCAGTTCACTT
rJMFF021H02+ TCTGNCCGCCATTGTTGATTNGCAGCCACAACCTCCCCAGCATGCATTCTCAGTTCACTT
rJMFF029G20+ TCTGGCCGCCATTGCTGATTCGCAGCCACAACCTCCCAAGCATGCATTCTCAGTTCACTT
____________________________________________________________
consensus TCTGGCCGCCATTGCTGATTCGCAGCCACAACCTCCC-AGCATGCATTCTCAGTTCACTT
. : . : . : . : . : . :
JMFF029G20- CAAGCGGAATCATGCAGACGGGAGCGCACTACCTGCCGCACCAACAGGCGGCGGCGCAGC
JMFF021H02- CAAGCGGAATCATGCAGACGGGAGCGCACTACCTGCCGCACCAACAGGCGGCGGCGCAGC
JMFF050E07- CAAGCGGAATCATGCAGACGGGAGCGCACTACCTGCCGCACCAACAGGCGGCGGCGCAGC
rJMFF021H02+ CAAGCGGAATCATGCAGACGGGAGCGCACTACCTGCCGCACCAACAGGCGGCGGCGCAGC
rJMFF029G20+ CAAGCGGAATCATGCAGACGGGAGCGCACTACCTGCCGCACCAACAGGCGGCGGCGCAGC
____________________________________________________________
consensus CAAGCGGAATCATGCAGACGGGAGCGCACTACCTGCCGCACCAACAGGCGGCGGCGCAGC
. : . : . : . : . : . :
JMFF029G20- AGATCTCAACGCAGTCTCTCATGGCCGCGCGCTCGCCTATGCAGCTGTACGGACAACAGC
JMFF021H02- AGATCTCAACGCAGTCTCTCATGGCCGCGCGCTCGCCTATGCAGCTGTACGGACAACAGC
JMFF050E07- AGATCTCAACGCAGTCTCTCATGGCCGCGCGCTCGCCTATGCAGCTGTACGGACAACAGC
rJMFF021H02+ AGATCTCAACGCAGTCTCTCATGGCCGCGCGCTCGCCTATGCAGCTGTACGGACAACAGC
rJMFF029G20+ AGATCTCAACGCAGTCTCTCATGGCCGCGCGCTCGCCTATGCAGCTGTACGGACAACAGC
rJMFF050E07+ CATGGCCGCGCGCTCGCCTATGCAGCTGTACGGACAACAGC
____________________________________________________________
consensus AGATCTCAACGCAGTCTCTCATGGCCGCGCGCTCGCCTATGCAGCTGTACGGACAACAGC
. : . : . : . : . : . :
JMFF029G20- AGCCGCTGTCTGCGTATCAACAGCAGGCCGCCGCCCTGCACGGCCAGATTGGGATGAGCT
JMFF021H02- AGCCGCTGTCTGCGTATCAACAGCAGGCCGCCGCCCTGCACGGCCAGATTGGGATGAGCT
JMFF050E07- AGCCGCTGTCTGCGTATCAACAGCAGGCCGCCGCCCTGCACGGCCAGATTGGGATGAGCT
rJMFF021H02+ AGCCGCTGTCTGCGTATCAACAGCAGGCCGCCGCCCTGCACGGCCAGATTGGGATGAGCT
rJMFF029G20+ AGCCGCTGTCTGCGTATCAACAGCAGGCCGCCGCCCTGCACGGCCAGATTGGGATGAGCT
rJMFF050E07+ AGCCGCTGTCTGCGTATCAACAGCAGGCCGCCGCCCTGCACGGCCAGATTGGGATGAGCT
____________________________________________________________
consensus AGCCGCTGTCTGCGTATCAACAGCAGGCCGCCGCCCTGCACGGCCAGATTGGGATGAGCT
. : . : . : . : . : . :
JMFF029G20- CCGGCGGCGGCGGCGGCAGCGGCCTCCACATACTACAGAGCGAGGCGCACAATGCCGGGA
JMFF021H02- CCGGCGGCGGCGGCGGCAGCGGCCTCCACATACTACAGAGCGAGGCGCACAATGCCGGGA
JMFF050E07- CCGGCGGCGGCGGCGGCAGCGGCCTCCACATACTACAGAGCGAGGCGCACAATGCCGGGA
rJMFF021H02+ CCGGCGGCGGCGGCGGCAGCGGCCTCCACATACTACAGAGCGAGGCGCACAATGCCGGGA
rJMFF029G20+ CCGGCGGCGGCGGCGGCAGCGGCCTCCACATACTACAGAGCGAGGCGCACAATGCCGGGA
rJMFF050E07+ CCGGCGGCGGCGGCGGCAGCGGCCTCCACATACTACAGAGCGAGGCGCACAATGCCGGGA
____________________________________________________________
consensus CCGGCGGCGGCGGCGGCAGCGGCCTCCACATACTACAGAGCGAGGCGCACAATGCCGGGA
. : . : . : . : . : . :
JMFF029G20- GCTTTGCCGACTTCGGCCGC
JMFF021H02- GCTTTGCCGACTTCGGCCGCGGATTGGGCGGCGGTGGGAGCAAGCAGGGAACTGGGCGGG
JMFF050E07- GCTTTGCCGACTTCGGCCGCGGATTGGGCGGCGGTGGGAGCAAGCA-GGAACTGGGCGGG
rJMFF021H02+ GCTTTGCCGACTTCGGCCGCGGATTGGGCGGCGGTGGGAGCAAGCA-GGAACTGGGCGGG
rJMFF029G20+ GCTTTGCCGACTTCGGCCGCGGATTGGGCGGCGGTGGGAGCAAGCA-GGAACTGGGCGGG
rJMFF050E07+ GCTTTGCCGACTTCGGCCGCGGATTGGGCGGCGGTGGGAGCAAGCA-GGAACTGGGCGGG
____________________________________________________________
consensus GCTTTGCCGACTTCGGCCGCGGATTGGGCGGCGGTGGGAGCAAGCA-GGAACTGGGCGGG
. : . : . : . : . : . :
JMFF021H02- TCCCTGTCCATGGATGCCCGCACCGGCTCCGGCGCCGACGG
JMFF050E07- TCCCTGTCCATGGATGCCCGCACCGGCTCCGGCGCCGACGGCGGCGAGACGCTGTACTTA
rJMFF021H02+ TCCCTGTCCATGGATGCCCGCACCGGCTCCGGCGCCGACGGCGGCGAGACGCTGTACTTA
rJMFF029G20+ TCCCTGTCCATGGATGCCCGCACCGGCTCCGGCGCCGACGGCGGCGAGACGCTGTACTTA
rJMFF050E07+ TCCCTGTCCATGGATGCCCGCACCGGCTCCGGCGCCGACGGCGGCGAGACGCTGTACTTA
____________________________________________________________
consensus TCCCTGTCCATGGATGCCCGCACCGGCTCCGGCGCCGACGGCGGCGAGACGCTGTACTTA
. : . : . : . : . : . :
JMFF050E07- NNAGCGGCCGACGATGGGAACTGAGGTAATGAGAGATAGGAATGTTTTA
rJMFF021H02+ AAAGCGGCCGACGATGGGAACTGAGGTAATGAGAGATAGGAATGTTTTAGTTTGCAGAAA
rJMFF029G20+ AAAGCGGCCGACGATGGGAACTGAGGTAATGAGAGATAGGAATGTTTTAGTTTGCAGAAA
rJMFF050E07+ AAAGCGGCCGACGATGGGAACTGAGGTAATGAGAGATAGGAATGTTTTAGTTTGCAGAAA
____________________________________________________________
consensus AAAGCGGCCGACGATGGGAACTGAGGTAATGAGAGATAGGAATGTTTTAGTTTGCAGAAA
. : . : . : . : . : . :
rJMFF021H02+ GTAGCTTAAGAGGGATGAACAAAGTTACGTTGCAGGTTTATGGACTGTCCTTGCTGGTAC
rJMFF029G20+ GTAGCTTAAGAGGGATGAACAAAGTTACGTTGCAGGTTTATGGACTGTCCTTGCTGGTAC
rJMFF050E07+ GTAGCTTAAGAGGGATGAACAAAGTTACGTTGCAGGTTTATGGACTGTCCTTGCTGGTAC
____________________________________________________________
consensus GTAGCTTAAGAGGGATGAACAAAGTTACGTTGCAGGTTTATGGACTGTCCTTGCTGGTAC
. : . : . : . : . : . :
rJMFF021H02+ TATGTATCAATGTATGTGACTCAATTTAGGTGCCCTTTACAAAAACTTGTTATGTGTTTT
rJMFF029G20+ TATGTATCAATGTATGTGACTCAATTTAGGTGCCCTTTACAAAAACTTGTTATGTGTTTT
rJMFF050E07+ TATGTATCAATGTATGTGACTCAATTTAGGTGCCCTTTACAAAAACTTGTTATGTGTTTT
____________________________________________________________
consensus TATGTATCAATGTATGTGACTCAATTTAGGTGCCCTTTACAAAAACTTGTTATGTGTTTT
. : . : . : . : . : . :
rJMFF021H02+ GACCAAATTAGGGTTTATTTTTATCTTCAAATTAGTCTCTCATCTTTATGGCAATGATCA
rJMFF029G20+ GACCAAATTAGGGTTTATTTTTATCTTCAAATTAGTCTCTCATCTTTATGGCAATGATCA
rJMFF050E07+ GACCAAATTAGGGTTTATTTTTATCTTCAAATTAGTCTCTCATCTTTATGGCAATGATCA
____________________________________________________________
consensus GACCAAATTAGGGTTTATTTTTATCTTCAAATTAGTCTCTCATCTTTATGGCAATGATCA
. : . : . : . : . : . :
rJMFF021H02+ TCA
rJMFF029G20+ TCA
rJMFF050E07+ TCATGTAAATTTCAAGCCAAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TCATGTAAATTTCAAGCCAAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGG