Contig 008388:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049O05Sequence511015324525008388 (4)ref|XP_004232348.1|142PREDICTED: uncharacterized protein LOC101265984 [Solanum lycopersicum]
JMSF004J13Sequence491008388 (4)ref|XP_004232348.1|154PREDICTED: uncharacterized protein LOC101265984 [Solanum lycopersicum]494008388 (4)ref|XP_004232348.1|154PREDICTED: uncharacterized protein LOC101265984 [Solanum lycopersicum]
JMSF004J15Sequence222008388 (4)ref|XP_006383436.1|1e-18hypothetical protein POPTR_0005s15490g [Populus trichocarpa] gb|ERP61233.1| hypo

Alignment

This contig is upended


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JMSF004J13-                                                 AATGCCAAACATGGAAGCCAAC
rJMSF004J13+                                                AATGCCAAACATGGAAGCCAAC
                      ____________________________________________________________
consensus                                                   AATGCCAAACATGGAAGCCAAC
 
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JMSF004J13-           TTAAACAGTTCATCTTTGATTGCGTTTTAGAGGTTGTAGACACGAAGGTCAGTCGATATT
rJMSF004J15+                                                  CACGAAGGTCAGTCGATATT
rJMSF004J13+          TTAAACAGTTCATCTTTGATTGCGTTTTAGAGGTTGTAGACACGAAGGTCAGTCGATATT
rJMFF049O05+                         TTGATTGCGTTNTAGAGGTTGTAGACACGAAGGTCAGTCGATATT
                      ____________________________________________________________
consensus             TTAAACAGTTCATCTTTGATTGCGTTTTAGAGGTTGTAGACACGAAGGTCAGTCGATATT
 
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JMSF004J13-           CCAAATCTGGTTTCAGGGCATGGACAAAGCTACCGGCTTGCATGAACACAGAGATGCTAG
rJMSF004J15+          CCAAATCTGGTNTCAGGGCATGGACAAAGCNACCGGCTTGCATGAACACAGAGATGCTAG
rJMSF004J13+          CCAAATCTGGTTTCAGGGCATGGACAAAGCTACCGGCTTGCATGAACACAGAGATGCTAG
rJMFF049O05+          CCAAATCTGGTTTCAGGGCATGGACAAAGCTACCGGCTTGCATGAACACAGAGATGCTAG
                      ____________________________________________________________
consensus             CCAAATCTGGTTTCAGGGCATGGACAAAGCTACCGGCTTGCATGAACACAGAGATGCTAG
 
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JMSF004J13-           TGTTTGAGATACTCGGGGAGGTGAAACGGTGGATGGCAATGACGGGGTTGATTCATGATG
rJMSF004J15+          TGTGTGAGATACTCGGGGAGGTGAAACGGTGGATGGCANTGNCGGGGCNGATTCANGATG
rJMSF004J13+          TGTTTGAGATACTCGGGGAGGTGAAACGGTGGATGGCAATGACGGGGTTGATTCATGATG
rJMFF049O05+          TGTTTGAGATACTCGGGGAGGTGAAACGGTGGATGGCAATGACGGGGTTGATTCATGATG
                      ____________________________________________________________
consensus             TGTTTGAGATACTCGGGGAGGTGAAACGGTGGATGGCAATGACGGGGTTGATTCATGATG
 
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JMSF004J13-           ATAAAATAGAATGGGACATGAGTCATTCTTTGGGAAAATGGACTGATTTTGAGGTTGAAG
rJMSF004J15+          ATAAAANAGAATGGGACATNAGTCATTCTTTGGGAAAATGGACTGATTTTGAGNTTGAAG
rJMSF004J13+          ATAAAATAGAATGGGACATGAGTCATTCTTTGGGAAAATGGACTGATTTTGAGGTTGAAG
rJMFF049O05+          ATAAAATAGAATGGGACATGAGTCATTCTTTGGGAAAATGGACTGATTTTGAGGTTGAAG
                      ____________________________________________________________
consensus             ATAAAATAGAATGGGACATGAGTCATTCTTTGGGAAAATGGACTGATTTTGAGGTTGAAG
 
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JMSF004J13-           TGTTTGAAAATGGCGGTGAAATCGATCGACAGATACTCCAGAGTTTGGTAGATGAAGTTG
rJMSF004J15+          TGTTTGAAAATGGCGGTGAAAT                                      
rJMSF004J13+          TGTTTGAAAATGGCGGTGAAATCGATCGACAGATACTCCAGAGTTTGGTAGATGAAGTTG
rJMFF049O05+          TGTTTGAAAATGGCGGTGAAATCGATCGACAGATACTCCAGAGTTTGGTAGATGAAGTTG
                      ____________________________________________________________
consensus             TGTTTGAAAATGGCGGTGAAATCGATCGACAGATACTCCAGAGTTTGGTAGATGAAGTTG
 
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JMSF004J13-           TGATGGACCTCTGTACTGTAGTGTAAACCAGGTTTCAAGTAATGAGGGTTCCAAAATCAA
rJMSF004J13+          TGATGGACCTCTGTACTGTAGTGTAAACCAGGTTTCAAGTAATGAGGGTTCCAAAATCAA
rJMFF049O05+          TGATGGACCTCTGTACTGTAGTGTAAACCAGGTTTCAAGTAATGAGGGTTCCAAAATCAA
                      ____________________________________________________________
consensus             TGATGGACCTCTGTACTGTAGTGTAAACCAGGTTTCAAGTAATGAGGGTTCCAAAATCAA
 
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JMSF004J13-           CATTCCAAGGGATCCCTCTTCTTCTTCTTCATCAAATCTTTAGCATGAATGTTTGTACNA
rJMSF004J13+          CATTCCAAGGGATCCCTCTTCTTCTTCTTCATCAAATCTTTAGCATGAATGTTTGTACAA
rJMFF049O05+          CATTCCAAGGGATCCCTCTTCTTCTTCTTCATCAAATCTTTAGCATGAATGTTTGTACAA
                      ____________________________________________________________
consensus             CATTCCAAGGGATCCCTCTTCTTCTTCTTCATCAAATCTTTAGCATGAATGTTTGTACAA
 
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JMSF004J13-           ATGGAGCACTGTAGTGACTGACTTTGTATCTGATATCAGTTTTAGTAGA           
rJMSF004J13+          ATGGAGCACTGTAGTGACTGACTTTGTATCTGATATCAGTTTTAGTAGA           
rJMFF049O05+          ATGGAGCACTGTAGTGACTGACTTTGTATCTGATATCAGTTTTAGTAGAATTTGTATTCA
                      ____________________________________________________________
consensus             ATGGAGCACTGTAGTGACTGACTTTGTATCTGATATCAGTTTTAGTAGAATTTGTATTCA
 
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rJMFF049O05+          TAGAATTTGCATCATAAAACCTGTGCTTTCATGAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TAGAATTTGCATCATAAAACCTGTGCTTTCATGAAAAAAAAAAAAAAAACTCTCCAGGGT