Contig 008386:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049M01Sequence503010331 (8)ref|XP_009791971.1|7e-30PREDICTED: chloride channel protein CLC-c-like [Nicotiana sylvestris] emb|CAA648537008386 (3)
JMSF008L06Sequence402010331 (8)ref|XP_004248849.1|5e-11PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum]774008386 (3)ref|NP_001275140.1|1e-56chloride channel protein CLC-c-like [Solanum tuberosum] emb|CAA71369.1| chloride
JMSF029A03Sequence709010331 (8)ref|XP_004248849.1|2e-71PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum]721008386 (3)ref|NP_001275140.1|1e-57chloride channel protein CLC-c-like [Solanum tuberosum] emb|CAA71369.1| chloride

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF029A03+ TGAATCA
rJMSF008L06+ TCA
                      ____________________________________________________________
consensus TGAATCA
 
. : . : . : . : . : . :
rJMSF029A03+ CCAGAGCTATATGGGCTTGTTCTTAGGTCACATCTGCTCGTTTTGCTGAATGGAAAGAAT
rJMSF008L06+ CCAGAGCTATATGGGCTTGTTCTTANGTCACATCTGCTCGTTTTGCTGAATGGAAAGAAT
                      ____________________________________________________________
consensus CCAGAGCTATATGGGCTTGTTCTTAGGTCACATCTGCTCGTTTTGCTGAATGGAAAGAAT
 
. : . : . : . : . : . :
rJMSF029A03+ TTCTCCAAACAGCAGGGGTTGATGGGCTCACAAATCTTGACGAGGTTTCACGCATTTGAT
rJMSF008L06+ TTCTCCAAACAGCAGGGGTTGATGGGCTCACAAATCTTGACGAGGTTTCACGCATTTGAT
                      ____________________________________________________________
consensus TTCTCCAAACAGCAGGGGTTGATGGGCTCACAAATCTTGACGAGGTTTCACGCATTTGAT
 
. : . : . : . : . : . :
rJMSF029A03+ TTTGCAAAGCCGGGTTTAGGAAAGGGGCTTAAAGTTGATGATTTGAATATCACGGAGGAG
rJMSF008L06+ TTTGCAAAGCCGGGTTTAGGAAAGGGGCTTAAAGTTGATGATTTGAATATCACGGAGGAG
                      ____________________________________________________________
consensus TTTGCAAAGCCGGGTTTAGGAAAGGGGCTTAAAGTTGATGATTTGAATATCACGGAGGAG
 
. : . : . : . : . : . :
rJMSF029A03+ GAGATGGAGATGTATGTTGATCTCCATCCTATCACAAATACGTCTCCTTACACTGTAGTG
rJMSF008L06+ GAGATGGAGATGTATGTTGATCTCCATCCTATCACAAATACGTCTCCTTACACTGTAGTG
                      ____________________________________________________________
consensus GAGATGGAGATGTATGTTGATCTCCATCCTATCACAAATACGTCTCCTTACACTGTAGTG
 
. : . : . : . : . : . :
rJMSF029A03+ GAGACGATGTCTCTGGCAAAAGCTGCAATACTCTTTCGAGAGCTTGGTCTCAGACACTTG
rJMSF008L06+ GAGACGATGTCTCTGGCAAAAGCTGCAATACTCTTTCGAGAGCTTGGTCTCAGACACTTG
                      ____________________________________________________________
consensus GAGACGATGTCTCTGGCAAAAGCTGCAATACTCTTTCGAGAGCTTGGTCTCAGACACTTG
 
. : . : . : . : . : . :
rJMSF029A03+ TGTGTTGTCCCAAAGCGACTTGGGAGACCACCAATTGTGGGAATCTTGACGCGACATGAT
rJMSF008L06+ TGTGTTGTCCCAAAGCGACTTGGGAGACCACCAATTGTGGGAATCTTGACGCGACATGAT
                      ____________________________________________________________
consensus TGTGTTGTCCCAAAGCGACTTGGGAGACCACCAATTGTGGGAATCTTGACGCGACATGAT
 
. : . : . : . : . : . :
rJMSF029A03+ TTCATGCCCGAGCATATCTTGGGACTCTACCCTAGCATCAATCCCCACGGCCATGGCTAG
rJMSF008L06+ TTCATGCCCGAGCATATCTTGGGACTCTACCCTAGCATCAATCCCCACGGCCATGGCTAG
rJMFF049M01+ ATGCCCGAGCATATCTTGGGACTCTACCCTAGCATCAATCCCCACGGCCATGGCTAG
                      ____________________________________________________________
consensus TTCATGCCCGAGCATATCTTGGGACTCTACCCTAGCATCAATCCCCACGGCCATGGCTAG
 
. : . : . : . : . : . :
rJMSF029A03+ TCGGGATTCGGTGAGTCTGCATTGGCAAAGGTCCCCATTATTCCCTTTTCTGAAGTTTCA
rJMSF008L06+ TCGGGATTCGGTGAGTCTGCATTGGCAAAGGTCCCCATTATTCCCTTTTCTGAAGTTTCA
rJMFF049M01+ TCGGGATTCGGTGAGTCTGCATTGGCAAAGGTCCCCATTATTCCCTTTTCTGAAGTTTCA
                      ____________________________________________________________
consensus TCGGGATTCGGTGAGTCTGCATTGGCAAAGGTCCCCATTATTCCCTTTTCTGAAGTTTCA
 
. : . : . : . : . : . :
rJMSF029A03+ GAGAGAACTTTGGTTATTTACATAGCATTGTGTTACTGTAACGGCATTGCGTTACATAGA
rJMSF008L06+ GAGAGAACTTTGGTTATTTACATAGCATTGTGTTACTGTAACGGCATTGCGTTACATAGA
rJMFF049M01+ GAGAGAACTTTGGTTATTTACATAGCATTGTGTTACTGTAACGGCATTGCGTTACATAGA
                      ____________________________________________________________
consensus GAGAGAACTTTGGTTATTTACATAGCATTGTGTTACTGTAACGGCATTGCGTTACATAGA
 
. : . : . : . : . : . :
rJMSF029A03+ ACATAATGGAGAAATAGAGTCAACGTACTAAACTGTCGCCGCATGCAAAACAAAGTTGTT
rJMSF008L06+ ACATAATGGAGAAATAGAGTCAACGTACTAAACTGTCGCCGCATGCAAAACAAAGTTGTT
rJMFF049M01+ ACATAATGGAGAAATAGAGTCAACGTACTAAACTGTCGCCGCATGCAAAACAAAGTTGTT
                      ____________________________________________________________
consensus ACATAATGGAGAAATAGAGTCAACGTACTAAACTGTCGCCGCATGCAAAACAAAGTTGTT
 
. : . : . : . : . : . :
rJMSF029A03+ TGTTTGTTTACGCATTCGTAGACAAACGTAAAAACAGTACGTAGTAATAATGTGGTCTCA
rJMSF008L06+ TGTTTGTTTACGCATTCGTAGACAAACGTAAAAACAGTACGTAGTAATAATGTGGTCTCA
rJMFF049M01+ TGTTTGTTTACGCATTCGTAGACAAACGTAAAAACAGTACGTAGTAATAATGTGGTCTCA
                      ____________________________________________________________
consensus TGTTTGTTTACGCATTCGTAGACAAACGTAAAAACAGTACGTAGTAATAATGTGGTCTCA
 
. : . : . : . : . : . :
rJMSF029A03+ TACTTCTGTAAGTTTATTCGTTTTCGAGTGCCAAATTAGCGCTCGTATATGTAT
rJMSF008L06+ TACTTCTGTAAGTTTATTCGTTTTCGAGTGCCAAATTAGCGCTCGTATATGTATTGAACT
rJMFF049M01+ TACTTCTGTAAGTTTATTCGTTTTCGAGTGCCAAATTAGCGCTCGTATATGTATTGAACT
                      ____________________________________________________________
consensus TACTTCTGTAAGTTTATTCGTTTTCGAGTGCCAAATTAGCGCTCGTATATGTATTGAACT
 
. : . : . : . : . : . :
rJMSF008L06+ GTGTAATATTTGTCGTTTTTGGGTGCGAAATGAGCAGTTGGGCACTAGTAT
rJMFF049M01+ GTGTAATATTTGTCGTTTTTGGGTGCGAAATGAGCAGTTGGGCACTAGTATTTGTATTGT
                      ____________________________________________________________
consensus GTGTAATATTTGTCGTTTTTGGGTGCGAAATGAGCAGTTGGGCACTAGTATTTGTATTGT
 
. : . : . : . : . : . :
rJMFF049M01+ AGTACTTAGTATTATTTATGTGAATTTATTTAATAATTTGACCTTGTTCTACTTAGTATT
                      ____________________________________________________________
consensus AGTACTTAGTATTATTTATGTGAATTTATTTAATAATTTGACCTTGTTCTACTTAGTATT
 
. : . : . : . : . : . :
rJMFF049M01+ ATTTATGTGAATTTATTTAATAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus ATTTATGTGAATTTATTTAATAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG