| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF049M01 | Sequence | 503 | 010331 (8) | ref|XP_009791971.1| | 7e-30 | PREDICTED: chloride channel protein CLC-c-like [Nicotiana sylvestris] emb|CAA648 | 537 | 008386 (3) | |||
| JMSF008L06 | Sequence | 402 | 010331 (8) | ref|XP_004248849.1| | 5e-11 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | 774 | 008386 (3) | ref|NP_001275140.1| | 1e-56 | chloride channel protein CLC-c-like [Solanum tuberosum] emb|CAA71369.1| chloride |
| JMSF029A03 | Sequence | 709 | 010331 (8) | ref|XP_004248849.1| | 2e-71 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | 721 | 008386 (3) | ref|NP_001275140.1| | 1e-57 | chloride channel protein CLC-c-like [Solanum tuberosum] emb|CAA71369.1| chloride |
This contig is upended
. : . : . : . : . : . :
rJMSF029A03+ TGAATCA
rJMSF008L06+ TCA
____________________________________________________________
consensus TGAATCA
. : . : . : . : . : . :
rJMSF029A03+ CCAGAGCTATATGGGCTTGTTCTTAGGTCACATCTGCTCGTTTTGCTGAATGGAAAGAAT
rJMSF008L06+ CCAGAGCTATATGGGCTTGTTCTTANGTCACATCTGCTCGTTTTGCTGAATGGAAAGAAT
____________________________________________________________
consensus CCAGAGCTATATGGGCTTGTTCTTAGGTCACATCTGCTCGTTTTGCTGAATGGAAAGAAT
. : . : . : . : . : . :
rJMSF029A03+ TTCTCCAAACAGCAGGGGTTGATGGGCTCACAAATCTTGACGAGGTTTCACGCATTTGAT
rJMSF008L06+ TTCTCCAAACAGCAGGGGTTGATGGGCTCACAAATCTTGACGAGGTTTCACGCATTTGAT
____________________________________________________________
consensus TTCTCCAAACAGCAGGGGTTGATGGGCTCACAAATCTTGACGAGGTTTCACGCATTTGAT
. : . : . : . : . : . :
rJMSF029A03+ TTTGCAAAGCCGGGTTTAGGAAAGGGGCTTAAAGTTGATGATTTGAATATCACGGAGGAG
rJMSF008L06+ TTTGCAAAGCCGGGTTTAGGAAAGGGGCTTAAAGTTGATGATTTGAATATCACGGAGGAG
____________________________________________________________
consensus TTTGCAAAGCCGGGTTTAGGAAAGGGGCTTAAAGTTGATGATTTGAATATCACGGAGGAG
. : . : . : . : . : . :
rJMSF029A03+ GAGATGGAGATGTATGTTGATCTCCATCCTATCACAAATACGTCTCCTTACACTGTAGTG
rJMSF008L06+ GAGATGGAGATGTATGTTGATCTCCATCCTATCACAAATACGTCTCCTTACACTGTAGTG
____________________________________________________________
consensus GAGATGGAGATGTATGTTGATCTCCATCCTATCACAAATACGTCTCCTTACACTGTAGTG
. : . : . : . : . : . :
rJMSF029A03+ GAGACGATGTCTCTGGCAAAAGCTGCAATACTCTTTCGAGAGCTTGGTCTCAGACACTTG
rJMSF008L06+ GAGACGATGTCTCTGGCAAAAGCTGCAATACTCTTTCGAGAGCTTGGTCTCAGACACTTG
____________________________________________________________
consensus GAGACGATGTCTCTGGCAAAAGCTGCAATACTCTTTCGAGAGCTTGGTCTCAGACACTTG
. : . : . : . : . : . :
rJMSF029A03+ TGTGTTGTCCCAAAGCGACTTGGGAGACCACCAATTGTGGGAATCTTGACGCGACATGAT
rJMSF008L06+ TGTGTTGTCCCAAAGCGACTTGGGAGACCACCAATTGTGGGAATCTTGACGCGACATGAT
____________________________________________________________
consensus TGTGTTGTCCCAAAGCGACTTGGGAGACCACCAATTGTGGGAATCTTGACGCGACATGAT
. : . : . : . : . : . :
rJMSF029A03+ TTCATGCCCGAGCATATCTTGGGACTCTACCCTAGCATCAATCCCCACGGCCATGGCTAG
rJMSF008L06+ TTCATGCCCGAGCATATCTTGGGACTCTACCCTAGCATCAATCCCCACGGCCATGGCTAG
rJMFF049M01+ ATGCCCGAGCATATCTTGGGACTCTACCCTAGCATCAATCCCCACGGCCATGGCTAG
____________________________________________________________
consensus TTCATGCCCGAGCATATCTTGGGACTCTACCCTAGCATCAATCCCCACGGCCATGGCTAG
. : . : . : . : . : . :
rJMSF029A03+ TCGGGATTCGGTGAGTCTGCATTGGCAAAGGTCCCCATTATTCCCTTTTCTGAAGTTTCA
rJMSF008L06+ TCGGGATTCGGTGAGTCTGCATTGGCAAAGGTCCCCATTATTCCCTTTTCTGAAGTTTCA
rJMFF049M01+ TCGGGATTCGGTGAGTCTGCATTGGCAAAGGTCCCCATTATTCCCTTTTCTGAAGTTTCA
____________________________________________________________
consensus TCGGGATTCGGTGAGTCTGCATTGGCAAAGGTCCCCATTATTCCCTTTTCTGAAGTTTCA
. : . : . : . : . : . :
rJMSF029A03+ GAGAGAACTTTGGTTATTTACATAGCATTGTGTTACTGTAACGGCATTGCGTTACATAGA
rJMSF008L06+ GAGAGAACTTTGGTTATTTACATAGCATTGTGTTACTGTAACGGCATTGCGTTACATAGA
rJMFF049M01+ GAGAGAACTTTGGTTATTTACATAGCATTGTGTTACTGTAACGGCATTGCGTTACATAGA
____________________________________________________________
consensus GAGAGAACTTTGGTTATTTACATAGCATTGTGTTACTGTAACGGCATTGCGTTACATAGA
. : . : . : . : . : . :
rJMSF029A03+ ACATAATGGAGAAATAGAGTCAACGTACTAAACTGTCGCCGCATGCAAAACAAAGTTGTT
rJMSF008L06+ ACATAATGGAGAAATAGAGTCAACGTACTAAACTGTCGCCGCATGCAAAACAAAGTTGTT
rJMFF049M01+ ACATAATGGAGAAATAGAGTCAACGTACTAAACTGTCGCCGCATGCAAAACAAAGTTGTT
____________________________________________________________
consensus ACATAATGGAGAAATAGAGTCAACGTACTAAACTGTCGCCGCATGCAAAACAAAGTTGTT
. : . : . : . : . : . :
rJMSF029A03+ TGTTTGTTTACGCATTCGTAGACAAACGTAAAAACAGTACGTAGTAATAATGTGGTCTCA
rJMSF008L06+ TGTTTGTTTACGCATTCGTAGACAAACGTAAAAACAGTACGTAGTAATAATGTGGTCTCA
rJMFF049M01+ TGTTTGTTTACGCATTCGTAGACAAACGTAAAAACAGTACGTAGTAATAATGTGGTCTCA
____________________________________________________________
consensus TGTTTGTTTACGCATTCGTAGACAAACGTAAAAACAGTACGTAGTAATAATGTGGTCTCA
. : . : . : . : . : . :
rJMSF029A03+ TACTTCTGTAAGTTTATTCGTTTTCGAGTGCCAAATTAGCGCTCGTATATGTAT
rJMSF008L06+ TACTTCTGTAAGTTTATTCGTTTTCGAGTGCCAAATTAGCGCTCGTATATGTATTGAACT
rJMFF049M01+ TACTTCTGTAAGTTTATTCGTTTTCGAGTGCCAAATTAGCGCTCGTATATGTATTGAACT
____________________________________________________________
consensus TACTTCTGTAAGTTTATTCGTTTTCGAGTGCCAAATTAGCGCTCGTATATGTATTGAACT
. : . : . : . : . : . :
rJMSF008L06+ GTGTAATATTTGTCGTTTTTGGGTGCGAAATGAGCAGTTGGGCACTAGTAT
rJMFF049M01+ GTGTAATATTTGTCGTTTTTGGGTGCGAAATGAGCAGTTGGGCACTAGTATTTGTATTGT
____________________________________________________________
consensus GTGTAATATTTGTCGTTTTTGGGTGCGAAATGAGCAGTTGGGCACTAGTATTTGTATTGT
. : . : . : . : . : . :
rJMFF049M01+ AGTACTTAGTATTATTTATGTGAATTTATTTAATAATTTGACCTTGTTCTACTTAGTATT
____________________________________________________________
consensus AGTACTTAGTATTATTTATGTGAATTTATTTAATAATTTGACCTTGTTCTACTTAGTATT
. : . : . : . : . : . :
rJMFF049M01+ ATTTATGTGAATTTATTTAATAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus ATTTATGTGAATTTATTTAATAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG