Contig 008382:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015N14Sequence559007950 (11)ref|XP_009601586.1|1e-24PREDICTED: ABC transporter F family member 5 [Nicotiana tomentosiformis]490008382 (8)gb|AGZ13631.1|2e-36ABCF_EF-3, partial [Trifolium repens]
JMFF020J16Sequence558007950 (11)ref|XP_009601586.1|2e-17PREDICTED: ABC transporter F family member 5 [Nicotiana tomentosiformis]505008382 (8)gb|AGZ13631.1|2e-35ABCF_EF-3, partial [Trifolium repens]
JMFF048P24Sequence372007950 (11)ref|XP_009601586.1|2e-06PREDICTED: ABC transporter F family member 5 [Nicotiana tomentosiformis]559008382 (8)ref|XP_011025596.1|3e-09PREDICTED: ABC transporter F family member 5 [Populus euphratica]
JMSF020L01Sequence661007950 (11)ref|XP_009601586.1|2e-45PREDICTED: ABC transporter F family member 5 [Nicotiana tomentosiformis]773008382 (8)ref|XP_006362777.1|3e-90PREDICTED: ABC transporter F family member 5-like [Solanum tuberosum]
JMSF025J22Sequence646007950 (11)ref|XP_009601586.1|5e-42PREDICTED: ABC transporter F family member 5 [Nicotiana tomentosiformis]730008382 (8)ref|XP_006362777.1|2e-95PREDICTED: ABC transporter F family member 5-like [Solanum tuberosum]
JMSF032H19Sequence647007950 (11)ref|XP_009601586.1|9e-47PREDICTED: ABC transporter F family member 5 [Nicotiana tomentosiformis]705008382 (8)ref|XP_006362777.1|2e-88PREDICTED: ABC transporter F family member 5-like [Solanum tuberosum]
JMSF032L14Sequence641007950 (11)ref|XP_009601586.1|6e-45PREDICTED: ABC transporter F family member 5 [Nicotiana tomentosiformis]632008382 (8)ref|XP_006362777.1|4e-75PREDICTED: ABC transporter F family member 5-like [Solanum tuberosum]
JMSF033A22Sequence627007950 (11)ref|XP_009601586.1|9e-30PREDICTED: ABC transporter F family member 5 [Nicotiana tomentosiformis]624008382 (8)gb|AGZ13631.1|5e-45ABCF_EF-3, partial [Trifolium repens]

Alignment

This contig is upended


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rJMSF020L01+                                            GAAAGAGTACTTTACTTAAGCTGATT
                      ____________________________________________________________
consensus                                               GAAAGAGTACTTTACTTAAGCTGATT
 
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rJMSF020L01+          ATGGGTTAGAGAGGCCAAGCAGAGGTGAAATTTTNGCTNGGGGGATCATAATGTGTTACC
rJMSF032H19+                                                   GGGATCATAATGTGTTACC
                      ____________________________________________________________
consensus             ATGGGTTAGAGAGGCCAAGCAGAGGTGAAATTTTNGCTNGGGGGATCATAATGTGTTACC
 
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rJMSF032L14+                                                   ATAAGACAGTAATTGAAAC
rJMSF020L01+          AAACTACTTTGAACAGAACCAGGCTGAAGCACTTGATTTGGATAAGACAGTAATTGAAAC
rJMSF032H19+          AAACTACNTTGAACAGAACCAGGCTGAAGCACTTGATTTGGATAAGACAGTAATTGAAAC
                      ____________________________________________________________
consensus             AAACTACTTTGAACAGAACCAGGCTGAAGCACTTGATTTGGATAAGACAGTAATTGAAAC
 
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rJMSF032L14+          TGTAGCTGAAGCTGCTGAGGACTGGAGACTAGACGATATAAAAGGACTTCTTGGACGTTG
rJMSF020L01+          TGTAGCTGAAGCTGCTGAGGACTGGAGACTAGACGATATAAAAGGACTTCTTGGACGTTG
rJMSF032H19+          TGTAGCTGAAGCTGCTGAGGACTGGAGACTAGACGATATAAAAGGACTTCTTGGACGTTG
                      ____________________________________________________________
consensus             TGTAGCTGAAGCTGCTGAGGACTGGAGACTAGACGATATAAAAGGACTTCTTGGACGTTG
 
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rJMSF032L14+          TAACTTTAAAGCTGACATGCTTGATAGGAAGGTTTCATTTTTGAGTGGAGGCGAGAAGGC
rJMSF033A22+                                                                  AGGC
rJMSF020L01+          TAACTTTAAAGCTGACATGCTTGATAGGAAGGTTTCATTTTTGAGTGGAGGCGAGAAGGC
rJMSF025J22+                                                                  AGGC
rJMSF032H19+          TAACTTTAAAGCTGACATGCTTGATAGGAAGGTTTCATTTTTGAGTGGAGGCGAGAAGGC
                      ____________________________________________________________
consensus             TAACTTTAAAGCTGACATGCTTGATAGGAAGGTTTCATTTTTGAGTGGAGGCGAGAAGGC
 
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rJMSF032L14+          ACGACTTGCGTTTTGCAAATTCATGGTGACACCTTCAACTTTACTAGTACTAGATGAGCC
rJMSF033A22+          ACGACTTGCGTTTTGCAAATTCATGGTGACACCTTCAACTTTACTAGTACTAGATGAGCC
rJMSF020L01+          ACGACTTGCGTTTTGCAAATTCATGGTGACACCTTCAACTTTACTAGTACTAGATGAGCC
rJMSF025J22+          ACGACTTGCGTTTTGCAAATTCATGGTGACACCTTCAACTTTACTAGTACTAGATGAGCC
rJMSF032H19+          ACGACTTGCGTTTTGCAAATTCATGGTGACACCTTCAACTTTACTAGTACTAGATGAGCC
rJMFF020J16+                          AAATTCATGGTGACACCTTCAACTTTNCTAGTATTAGATGANCC
rJMFF015N14+                                            TCAACTTTACTAGTACTAGATGAGCC
                      ____________________________________________________________
consensus             ACGACTTGCGTTTTGCAAATTCATGGTGACACCTTCAACTTTACTAGTACTAGATGAGCC
 
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rJMSF032L14+          AACCAATCATTTAGATATACCATCAAAAGAGATGCTTGAGGAGGCAATAACAGAGTATGA
rJMSF033A22+          ANCCAATCATTTAGATATACCATCAAAAGAGATGCTTGAGGAGGCAATAACAGAGTATGA
rJMSF020L01+          AACCAATCATTTAGATATACCATCAAAAGAGATGCTTGAGGAGGCAATAACAGAGTATGA
rJMSF025J22+          AACCAATCATTTAGATATACCATCAAAAGAGATGCTTGAGGAGGCAATAACAGAGTATGA
rJMSF032H19+          AACCAATCATTTAGATATACCATCAAAAGAGATGCTTGAGGAGGCAATAACAGAGTATGA
rJMFF020J16+          AACCAATCATTTAGATATACCATCAAAAGAGATGCTTGAGGAGGNGATAACAGAGTATGA
rJMFF015N14+          AACCAATCATTTAGATATACCATCAAAAGAGATGCTTGAGGAGGCAATAACAGAGTATGA
                      ____________________________________________________________
consensus             AACCAATCATTTAGATATACCATCAAAAGAGATGCTTGAGGAGGCAATAACAGAGTATGA
 
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rJMSF032L14+          GGGCACTGTGATTACTGTGTCGCATGATCGATACTTCATCAAGCAAATTGTTAACAGAGT
rJMSF033A22+          GGGCACTGTGATTACTGTGTCGCATGATCGATACTTCATCAAGCAAATTGTTAACAGAGT
rJMSF020L01+          GGGCACTGTGATTACTGTGTCGCATGATCGATACTTCATCAAGCAAATTGTTAACAGAGT
rJMSF025J22+          GGGCACTGTGATTACTGTGTCGCATGATCGATACTTCATCAAGCAAATTGTTAACAGAGT
rJMSF032H19+          GGGCACTGTGATTACTGTGTCGCATGATCGATACTTCATCAAGCAAATTGTTAACAGAGT
rJMFF020J16+          GGGCACTGTGATTACTGTGTCGCATGATCGATACTTCATCAAGCAAATTGTTANCAGAGT
rJMFF015N14+          GGGCACTGTGATTACTGTGTCGCATGATCGATACTTCATCAAGCAAATTGTTAACAGAGT
                      ____________________________________________________________
consensus             GGGCACTGTGATTACTGTGTCGCATGATCGATACTTCATCAAGCAAATTGTTAACAGAGT
 
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rJMSF032L14+          GTTGGAAGTAAAAGATGGTACTTTACAGGACTATGCTGGGGATTATGAATATTATTTAGA
rJMSF033A22+          GTTGGAAGTAAAAGATGGTACTTTACAGGACTATGCTGGGGATTATGAATATTATTTAGA
rJMSF020L01+          GTTGGAAGTAAAAGATGGTACTTTACAGGACTATGCTGGGGATTATGAATATTATTTAGA
rJMSF025J22+          GTTGGAAGTAAAAGATGGTACTTTACAGGACTATGCTGGGGATTATGAATATTATTTAGA
rJMSF032H19+          GTTGGAAGTAAAAGATGGTACTTTACAGGACTATGCTGGGGATTATGAATATTATTTAGA
rJMFF020J16+          GTTGGAAGTAAAAGATGGTACTTTACAGGACTATGCTGGGGATTATGAATATTATNTAGA
rJMFF015N14+          GTTGGAAGTAAAAGATGGTACTTTACAGGACTATGCTGGGGATTATGAATATTATTTAGA
rJMFF048P24+                                         TATGCTGGGGATTAGGAATATTATTTGGA
                      ____________________________________________________________
consensus             GTTGGAAGTAAAAGATGGTACTTTACAGGACTATGCTGGGGATTATGAATATTATTTAGA
 
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rJMSF032L14+          GAAAAACCTGGAGGCTAGGGAAAAAGAATTAGAGAGAGAGGCAGAGCTGGAGGAGAAGTC
rJMSF033A22+          GAAAAACCTGGAGGCTAGGGAAAAAGAATTAGAGAGAGAGGCAGAGCTGGAGGAGAAGTC
rJMSF020L01+          GAAAAACCTGGAGGCTAGGGAAAAAGAATTAGAGAGAGAGGCAGAGCTGGAGGAGAAGTC
rJMSF025J22+          GAAAAACCTGGAGGCTAGGGAAAAAGAATTAGAGAGAGAGGCAGAGCTGGAGGAGAAGTC
rJMSF032H19+          GAAAAACCTGGAGGCTAGGGAAAAAGAATTAGAGAGAGAGGCAGAGCTGGAGGAGAAGTC
rJMFF020J16+          GAAAAACNTGGAGGTTAGGGAAAAAGAATTAGAGAGAGAGGCAGAGCTGGAGGAGAAGTC
rJMFF015N14+          GAAAAACCTGGAGGCTAGGGAAAAAGAATTAGAGAGAGAGGCAGAGCTGGAGGAGAAGTC
rJMFF048P24+          GAAAGACCTGGAGGTTGGGGAAAAAAATTTAGAGAGAGAGGCGCACCTGGAGGAGAAGTC
                      ____________________________________________________________
consensus             GAAAAACCTGGAGGCTAGGGAAAAAGAATTAGAGAGAGAGGCAGAGCTGGAGGAGAAGTC
 
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rJMSF032L14+          CCCCAAAGCTAAAGCCAAGGCCAAAATGTCAAAGGCTGAGAGGGAGGCTCGGAAAAAGCA
rJMSF033A22+          CCCCAAAGCTAAAGCCAAGGCCAAAATGTCAAAGGCTGAGAGGGAGGCTCGGAAAAAGCA
rJMSF020L01+          CCCCAAAGCTAAAGCCAAGGCCAAAATGTCAAAGGCTGAGAGGGAGGCTCGGAAAAAGCA
rJMSF025J22+          CCCCAAAGCTAAAGCCAAGGCCAAAATGTCAAAGGCTGAGAGGGAGGCTCGGAAAAAGCA
rJMSF032H19+          CCCCAAAGCTAAAGCCAAGGCCAAAATGTCAAAGGCTGAGAGGGAGGCTCGGAAAAAGCA
rJMFF020J16+          CCCCAAAGCTAAAGCCAAGNCCAAAATGTCAAAGGNTGAGAGGGAGGCTCGGAAAAAGCA
rJMFF015N14+          CCCCAAAGCTAAAGCCAAGGCCAAAATGTCAAAGGCTGAGAGGGAGGCTCGGAAAAAGCA
rJMFF048P24+          CCCCAAAGTTAAAGCCAAGGCCAAAATTTCAAAGTCTGAGAGGGAGGCTCGGAAAAAGCA
                      ____________________________________________________________
consensus             CCCCAAAGCTAAAGCCAAGGCCAAAATGTCAAAGGCTGAGAGGGAGGCTCGGAAAAAGCA
 
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rJMSF032L14+          GAAACAGCAGGCCTTTCAAGCAGCCAAACAGAAGTCC-AAAAAACTCAAGAACTCCAAGA
rJMSF033A22+          GAAACAGCAGGCCTTTCAAGCAGCCAAACAGAAGTCC-AAAAAACTCAAGAACTCCAAGA
rJMSF020L01+          GAAACAGCAGGCCTTTCAAGCAGCCAAACAGAAGTCC-AAAAAACTCAAGAACTCCAAGA
rJMSF025J22+          GAAACAGCAGGCCTTTCAAGCAGCCAAACAGAAGTCC-AAAAAACTCAAGAACTCCAAGA
rJMSF032H19+          GAAACAGCAGGCCTTTCAAGCAGCCAAACAGAAGTCC-AAAAAACTCAAGAACTCCAAGA
rJMFF020J16+          GAAACAGCAGGCCTTTCAAGCAGCCAANCAGAAGTCC-AAAAAACTCAAGAACTCCAAGA
rJMFF015N14+          GAAACAGCAGGCCTTTCAAGCAGCCAAACAGAAGTCC-AAAAAACTCAAGAACTCCAAGA
rJMFF048P24+          AAAACAGCAGGCTTTTCAAGCAGCCAAACAGAAGTCCAAAAAAACTCAAGAACTCCAAGA
                      ____________________________________________________________
consensus             GAAACAGCAGGCCTTTCAAGCAGCCAAACAGAAGTCC-AAAAAACTCAAGAACTCCAAGA
 
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rJMSF032L14+          GATGGAACTGAATTATTATCACAGTTTCATTTATTTCTTCTGTTATTAATAATTTAGTTG
rJMSF033A22+          GATGGAACTGAATTATTATCACAGTTTCATTTATTTCTTCTGTTATTAATAATTTAGTTG
rJMSF020L01+          GATGGAACTGAATTATTATCACAGTTTCATTTATTTCTTCTGTTATTAATAATTTAGTTG
rJMSF025J22+          GATGGAACTGAATTATTATCACAGTTTCATTTATTTCTTCTGTTATTAATAATTTAGTTG
rJMSF032H19+          GATGGAACTGAATTATTATCACAGTTTCATTTATTTCTTCTGTTATTAATAATTTAGTTG
rJMFF020J16+          GATGGAACTGAATTATTATCACAGTTTCATTTATTTCTTCTNTTATTAATAATNTAGTTG
rJMFF015N14+          GATGGAACTGAATTATTATCACAGTTTCATTTATTTCTTCTGTTATTAATAATTTAGTTG
rJMFF048P24+          GATGGAACTGAATTATTATCCCAGTTTCATTTATTTCTTCTGTTATTAATAATTTAGTGG
                      ____________________________________________________________
consensus             GATGGAACTGAATTATTATCACAGTTTCATTTATTTCTTCTGTTATTAATAATTTAGTTG
 
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rJMSF032L14+          AATCACCCATATTG                                              
rJMSF033A22+          AATCACCCATAT                                                
rJMSF020L01+          AATCACCCATATTGTAA                                           
rJMSF025J22+          AATCACCCATATTGTAACCC                                        
rJMSF032H19+          AATCACCCATATTGTAACCC                                        
rJMFF020J16+          AATCACCCATANAGTAACCCNGCTCNCTGTATATAT                        
rJMFF015N14+          AATCACCCATATTGTAACCCTGCTCGCTGTATATAT                        
rJMFF048P24+          AATCGCCCATATGGTACCCCTGCTCGCTGTATATATTCTTGCAGAAAACATGGAAAATGG
                      ____________________________________________________________
consensus             AATCACCCATATTGTAACCCTGCTCGCTGTATATATTCTTGCAGAAAACATGGAAAATGG
 
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rJMFF048P24+          CGCCCAACAAAAAGAATAAAACAAAAAGAGAAAAGGTTATCTATTAGCGCTAGTGGATTT
                      ____________________________________________________________
consensus             CGCCCAACAAAAAGAATAAAACAAAAAGAGAAAAGGTTATCTATTAGCGCTAGTGGATTT