Contig 008380:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF030B05+                                                              GATCNTCA
                      ____________________________________________________________
consensus                                                                 GATCNTCA
 
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rJMSF010L18+                           CTTAGTGTGGTTCAAGAGAGAGTCATAGCCTTGAAAGCTGATC
rJMFF030B05+          TAGGCTTCCCCCTCAGGCTTAGTGTGGTTCAAGAGAGAGTCATAGCCTTGAAAGCTGATC
                      ____________________________________________________________
consensus             TAGGCTTCCCCCTCAGGCTTAGTGTGGTTCAAGAGAGAGTCATAGCCTTGAAAGCTGATC
 
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rJMSF010L18+          AAAGTATCAAACACAGAAATTAATTTCAAACAGGGAAGATCCCCCACGCCTAGAGAGATG
rJMFF030B05+          AAAGTATCAAACNCAGAAATTAATTTCAANCAGGGAAGATCCCCCACGCCTAGAGAGATG
                      ____________________________________________________________
consensus             AAAGTATCAAACACAGAAATTAATTTCAAACAGGGAAGATCCCCCACGCCTAGAGAGATG
 
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rJMSF010L18+          GTCTTCTGAGAATATCCGCCGGCGCTGGCAATGGACGTGGTGACNCCGCCGACATTTGAT
rJMFF030B05+          GTNTTNTGAGAATATCCGCCGGCGCTGGCAATGGACGTGGTGACACCGCCGACATTTGAT
                      ____________________________________________________________
consensus             GTCTTCTGAGAATATCCGCCGGCGCTGGCAATGGACGTGGTGACACCGCCGACATTTGAT
 
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rJMSF010L18+          ACTCAAGTAGTATCAGAAAAACCCTAGCTAGGGAGATGATAAGAAGAGAGTACGTTTTTA
rJMFF030B05+          ACTCAAGTAGTATCAGAAAAACCCTAGCTAGGGAGATGATAAGAAGAGAGTACGTTTTTA
                      ____________________________________________________________
consensus             ACTCAAGTAGTATCAGAAAAACCCTAGCTAGGGAGATGATAAGAAGAGAGTACGTTTTTA
 
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rJMSF010L18+          GAAGCTTTTGCGTNTTAGGGGAGAAAGAGAGAGAGAGTNCGTTATAGTGAAAAATTTCAA
rJMFF030B05+          GAAGCCTTTGCGTNTTAGGGGAGAAAGAGAGAGAGAGTACGTTATAGTGAAAAATTTCAA
                      ____________________________________________________________
consensus             GAAGCTTTTGCGTNTTAGGGGAGAAAGAGAGAGAGAGTACGTTATAGTGAAAAATTTCAA
 
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rJMSF010L18+          AGTGCAGCTATACGCAGAGGCGGTTATAACCGTTAGACNCTGAAGAAGCCTTGATCATAG
rJMFF030B05+          AGTGCAGCTATACGCAGAGGCGGTTATAACCGTTAGACACTGAAGAAGCCTTGATCATAG
rJMFF048M22+                                            AGACACTGAAGAAGCCTTGATCATAG
                      ____________________________________________________________
consensus             AGTGCAGCTATACGCAGAGGCGGTTATAACCGTTAGACACTGAAGAAGCCTTGATCATAG
 
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rJMSF010L18+          GGATCCAAGTACGGGATCGCGTCTATATNTGAGACGNGTAACGTCATTTCCTCCCGGGGT
rJMFF030B05+          GGATCCAAGTACGGGATCGCGTNTATATTTGAGACGTGTAACGTCATTTCCTCCCGGGGT
rJMFF048M22+          GGATCCAAGTACGGGATCGCGTCTATATCTGAGACGTGTAACGTCATTTCCTCCCGGGGT
                      ____________________________________________________________
consensus             GGATCCAAGTACGGGATCGCGTCTATATTTGAGACGTGTAACGTCATTTCCTCCCGGGGT
 
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rJMSF010L18+          TTGTTACGGCCTTACGGGGAAAAGTGACGACGTAGTTTTAACTCCATCAGTTTATNTCAA
rJMFF030B05+          TTGTTACGGCCTTACGGGGAAAAGTGACGACGTAGTTTTAACTCCATCAGTTTATCTCAA
rJMFF048M22+          TTGTTACGGCCTTACGGGGAAAAGTGACGACGTAGTTTTAACTCCATCAGTTTATCTCAA
                      ____________________________________________________________
consensus             TTGTTACGGCCTTACGGGGAAAAGTGACGACGTAGTTTTAACTCCATCAGTTTATCTCAA
 
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rJMSF010L18+          CTGCTTTGTATTAAGTTGGTCTNTACGACGCCCGTTTGAACTTTTTTTTTTTAAATGTAA
rJMFF030B05+          CTGCTTTGTATTAAGTTGGTCTNTACGACGCCCGTTTGAACTTTTTTTTTTTAAATGTAA
rJMFF048M22+          CTGCTTTGTATTAAGTTGGTCTCTACGACGCCCGTTTGAAC-TTTTTTTTTTAAATGTAA
                      ____________________________________________________________
consensus             CTGCTTTGTATTAAGTTGGTCTCTACGACGCCCGTTTGAACTTTTTTTTTTTAAATGTAA
 
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rJMSF010L18+          GATTATGGGAAATTTGTATCCACAATCAACACCCAAACAAAAGAAACGTTGCCCCGAGGT
rJMFF030B05+          GATTATGGGAAATTTGTATCCACAATCAACACCCAAACAAAAGAAACGTTGCCCCGAGGT
rJMFF048M22+          GATTATGGGAAATTTGTATCCACAATCAACACCCAAACAAAAGAAACGTTGCCCCGAGGT
                      ____________________________________________________________
consensus             GATTATGGGAAATTTGTATCCACAATCAACACCCAAACAAAAGAAACGTTGCCCCGAGGT
 
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rJMSF010L18+          ACCCTGATGAATTGGTGGAACCATGATTTTTAACATTAATTTTTAATTTAT         
rJMFF030B05+          A-CCTGATGAATTGGTGGAA-CATGATTTTTAACATTAATTTTTAATTTAT         
rJMFF048M22+          A-CCTGATGAATTGGTGGAA-CATGATTTTTAACATTAATTTTTAATTTATTGTTATTAT
                      ____________________________________________________________
consensus             A-CCTGATGAATTGGTGGAA-CATGATTTTTAACATTAATTTTTAATTTATTGTTATTAT