Contig 008377:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040O04Sequence495003619 (8)ref|XP_006304573.1|6e-55hypothetical protein CARUB_v10011593mg [Capsella rubella] gb|EOA37471.1| hypothe742008377 (2)
JMFF048K13Sequence510003619 (8)ref|XP_010260769.1|6e-57PREDICTED: organic cation/carnitine transporter 3-like [Nelumbo nucifera]369008377 (2)

Alignment

This contig is upended


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rJMFF040O04+                  TNGTCACTCTTGCTTTGCATGCACACAGTAATTAAATTTAATTACCCGTGAT
                      ____________________________________________________________
consensus                     TNGTCACTCTTGCTTTGCATGCACACAGTAATTAAATTTAATTACCCGTGAT
 
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rJMFF040O04+          GGGCCCCATGGCACTATTGTACTTAATACTTATCTTCCCCAATTGTTTGTGATAGGAAAT
                      ____________________________________________________________
consensus             GGGCCCCATGGCACTATTGTACTTAATACTTATCTTCCCCAATTGTTTGTGATAGGAAAT
 
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rJMFF040O04+          ATACTTTGGTCTACAACTCATCTTATCCCCTGGACCTGGTTGGATAGGTCATTTCCTGAT
                      ____________________________________________________________
consensus             ATACTTTGGTCTACAACTCATCTTATCCCCTGGACCTGGTTGGATAGGTCATTTCCTGAT
 
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rJMFF040O04+          CTGAACCGATTAGAGTGTAGCGCCTGGCTGACTCGACTTGAAAGATTATCGACTATGTAG
                      ____________________________________________________________
consensus             CTGAACCGATTAGAGTGTAGCGCCTGGCTGACTCGACTTGAAAGATTATCGACTATGTAG
 
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rJMFF040O04+          CTTGATGAGCCGAACTGTTACCTTAATCTTTCTTTTCGGTACCGACCTGTTTCTTCGTTC
                      ____________________________________________________________
consensus             CTTGATGAGCCGAACTGTTACCTTAATCTTTCTTTTCGGTACCGACCTGTTTCTTCGTTC
 
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rJMFF040O04+          GAGACCCCAGGCACGTATACTTAGCGTCTAAGTTCATCCCAATACGCAATTGGTTAGTCA
                      ____________________________________________________________
consensus             GAGACCCCAGGCACGTATACTTAGCGTCTAAGTTCATCCCAATACGCAATTGGTTAGTCA
 
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rJMFF040O04+          GATATACTTTTACACGTGCACTTTTCTCCTCAGCCGACCAGATTACCCAGTGCATGGAGG
rJMFF048K13+                                                             GCATGGAGG
                      ____________________________________________________________
consensus             GATATACTTTTACACGTGCACTTTTCTCCTCAGCCGACCAGATTACCCAGTGCATGGAGG
 
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rJMFF040O04+          GTACGTGGCGCACATGCCGGTCCGTCAACAAGTGTCCCCTCAAATTCTCTATAAATACCC
rJMFF048K13+          GTACGTGGCGCACATGCCGGTCCGTCAACAAGTGTCCCCTCAAATTTTCTATAAATACCC
                      ____________________________________________________________
consensus             GTACGTGGCGCACATGCCGGTCCGTCAACAAGTGTCCCCTCAAATTTTCTATAAATACCC
 
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rJMFF040O04+          CGCGAGACGCGGGTAAAAGAGACTTTTTTGGCAACTTCTTAATAGCCCATCCACCTTAGC
rJMFF048K13+          CGCGAGACGCGGGTAAAAGAGACTTTTTTGGCAACTTCTTAATAGCCCATCCCCCTTAGC
                      ____________________________________________________________
consensus             CGCGAGACGCGGGTAAAAGAGACTTTTTTGGCAACTTCTTAATAGCCCATCCCCCTTAGC
 
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rJMFF040O04+          TCGGGAACCTCTGGCCTCACGCCATTAGTCGAGCATAGTACCTTAAACCAATAAGCAGAC
rJMFF048K13+          TCGGGAACCTCTGGCCTCACGCCATTAGTCGAGCATAGTACCTTAAACCAATAAGCAGAC
                      ____________________________________________________________
consensus             TCGGGAACCTCTGGCCTCACGCCATTAGTCGAGCATAGTACCTTAAACCAATAAGCAGAC
 
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rJMFF040O04+          CGCATAAGGGCCGAACCCGCTCCAATCCTGTCTTTTGTACATATTCGTAGTAGACGCGGT
rJMFF048K13+          CGCATAAGGGCCGAACCCGCTCCAATCCTGTCTTTTGTACATATTCGTAGTAGACGCGGT
                      ____________________________________________________________
consensus             CGCATAAGGGCCGAACCCGCTCCAATCCTGTCTTTTGTACATATTCGTAGTAGACGCGGT
 
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rJMFF040O04+          ATTTACTACATCAGTTTGGATGGTCCTATCTACTATTCTTCATTCAATCATTCCTCAGAT
rJMFF048K13+          ATTTACTACATCAGTTTGGATGGTCCTATCTACTATTCTTCATTCAATCATTCCTCAGAT
                      ____________________________________________________________
consensus             ATTTACTACATCAGTTTGGATGGTCCTATCTACTATTCTTCATTCAATCATTCCTCAGAT
 
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rJMFF040O04+          CTTATAGGAAAATACTATGTGTACTCTTAT                              
rJMFF048K13+          TTTATAGGAAAATACTATGTGTACTCTTATTTTTTACTGTTAACTTTTACTCTCATCCAT
                      ____________________________________________________________
consensus             TTTATAGGAAAATACTATGTGTACTCTTATTTTTTACTGTTAACTTTTACTCTCATCCAT