Contig 008374:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016N19Sequence733008374 (5)ref|XP_009757138.1|5e-114PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana sylvestris]
JMFF041D03Sequence646012989 (5)ref|XP_004238938.1|5e-113PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Solanum lycopersicum]615008374 (5)ref|XP_009610945.1|2e-94PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]
JMFF048G18Sequence188012989 (5)ref|XP_010681571.1|4e-09PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Beta vulgaris subsp. vulgaris]248008374 (5)ref|XP_009610945.1|8e-06PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]
JMFN039H08Sequence578008374 (5)ref|XP_009610945.1|7e-97PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]
JMSF049K17Sequence648012989 (5)ref|XP_004238938.1|3e-112PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Solanum lycopersicum]722008374 (5)ref|XP_009610945.1|5e-114PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+                                        GCTATGCACCATAGTCTTCTACGACCGCGT
rJMFF016N19+                                 CATCCATGCTATGCACCATAGTCTTNTACGACCGCGT
                      ____________________________________________________________
consensus                                    CATCCATGCTATGCACCATAGTCTTCTACGACCGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          CTTCGTCCCCTTGGCCAGAAAAGTCACCGGACTCGAGCGTGGCATCTCCTTTCTCAGCCG
rJMFF041D03+                                                                 AGCCG
JMFN039H08-                                                         TCCTTTCTCAGCCG
rJMFF016N19+          CTTCGTCCCCTTGGCCAGAAAAGTCACCGGACTCGAGCGTGGCATCTCCTTTCTCAGCCG
                      ____________________________________________________________
consensus             CTTCGTCCCCTTGGCCAGAAAAGTCACCGGACTCGAGCGTGGCATCTCCTTTCTCAGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
rJMFF041D03+          CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
JMFN039H08-           CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
rJMFF016N19+          CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
                      ____________________________________________________________
consensus             CATGGGCATTGGCTTCTTCATCTCCATCCTCGCAACTCTGGTGGCCGGCTTCGTAGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
rJMFF041D03+          GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
JMFN039H08-           GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
rJMFF016N19+          GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
                      ____________________________________________________________
consensus             GAAGCGGAAACACGCCGCCGCTGCCCACGGAATAACTGATAAGCCCGACGCAATGATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          CATTCCGGTTTTCTGGCTGGTGCCGCAGTACTGCCTGCACGGGATGGCAGAGGCCTTCAT
rJMFF041D03+          CATTCCGGTTTTCTGGCTGGTGCCGCAGTATTGCCTGCACGGGATGGCAGAGGCCTTCAT
JMFN039H08-           CATTCCGGTTTTCTGGCTGGTGCCGCAGTACTGCCTGCACGGGATGGCAGAGGCCTTCAT
rJMFF016N19+          CATTCCGGTTTTCTGGCTGGTGCCGCAGTACTGCCTGCACGGGATGGCAGAGGCCTTCAT
                      ____________________________________________________________
consensus             CATTCCGGTTTTCTGGCTGGTGCCGCAGTACTGCCTGCACGGGATGGCAGAGGCCTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
rJMFF041D03+          GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
JMFN039H08-           GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
rJMFF016N19+          GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
                      ____________________________________________________________
consensus             GTCAATCGGCCACCTGGAGTTCTTCTACGATCAAGCCCCGGAGAGCATGAGGAGCACGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
rJMFF041D03+          GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
JMFN039H08-           GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
rJMFF016N19+          GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
                      ____________________________________________________________
consensus             GTCGGCGCTGTTCTGGACCGCCATCTCCGCCGGGAATTACATGAGCACTCTCTTGGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
rJMFF041D03+          TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
JMFN039H08-           TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
rJMFF016N19+          TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
                      ____________________________________________________________
consensus             TCTGGTCCACAAGTTCAGCGCTGGCCCCGGCGGATCAAACTGGCTTCCCGATAACAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAACTT
rJMFF041D03+          GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAATTT
JMFN039H08-           GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAACTT
rJMFF016N19+          GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAACTT
rJMFF048G18+                                                              TTCAACTT
                      ____________________________________________________________
consensus             GAACAAGGGCAAGTTGGAGTACTTTTACTGGCTCCTCACATTGCTGCAACTCTTCAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
rJMFF041D03+          TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
JMFN039H08-           TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
rJMFF016N19+          TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
rJMFF048G18+          TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
                      ____________________________________________________________
consensus             TGTTTACTATCTTTTCTGTGCAAAATTCTATACTTTCAAGCCAATTCAGATCCAGAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
rJMFF041D03+          GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
JMFN039H08-           GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTNCACTTGCAAACAATGTTTAGCT
rJMFF016N19+          GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
rJMFF048G18+          GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
                      ____________________________________________________________
consensus             GGAAGGTGGTGATGAGCCCAAAAGGAATGGGACGATTCAACTTGCAAACAATGTTTAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
rJMFF041D03+          ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
JMFN039H08-           ATTAATTTGATTATTATATGTAGT                                    
rJMFF016N19+          ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
rJMFF048G18+          ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
                      ____________________________________________________________
consensus             ATTAATTTGATTATTATATGTAGTAATATATAAGATCAAATTAACTAGCATATGCATCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049K17+          TAATTTAATTTGGGCCAGGCCTTGATATGTAC                            
rJMFF041D03+          TAATTTAATT                                                  
rJMFF016N19+          TAATTTAATTTGGGCCAGGCCTTGATATGTAC                            
rJMFF048G18+          TAATTTAATTTGGGCCAGGCCTTGATATGTACGTATGTATAGTAGTATATACACTTTGAC
                      ____________________________________________________________
consensus             TAATTTAATTTGGGCCAGGCCTTGATATGTACGTATGTATAGTAGTATATACACTTTGAC