Contig 008373:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019A02Sequence606000383 (6)ref|XP_006338753.1|6e-102PREDICTED: acetate--CoA ligase ACS, chloroplastic/glyoxysomal-like [Solanum tub756008373 (4)emb|CDP16759.1|2e-122unnamed protein product [Coffea canephora]
JMFF019I14Sequence574000383 (6)ref|XP_009802178.1|1e-66PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [144008373 (4)
JMFF048F15Sequence411000383 (6)ref|XP_006338753.1|2e-41PREDICTED: acetate--CoA ligase ACS, chloroplastic/glyoxysomal-like [Solanum tub257008373 (4)
JMSF019D10Sequence220015729719008373 (4)emb|CDP16759.1|5e-107unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF019A02+                        TGGAGTTCAGCCTGTCATAGTGGATGAGAAGGGTGTCGAGATTGAA
                      ____________________________________________________________
consensus                           TGGAGTTCAGCCTGTCATAGTGGATGAGAAGGGTGTCGAGATTGAA
 
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rJMFF019A02+          GGTGAATGCAGTGGCTATTTGTGTATAAAAAGCTCATGGCCTGGTGCATTCCGAACTCTT
rJMSF019D10+                           TTTGTGTATAAAAAGCTCATGGCCTGGTGCATTCCGAACTCTT
                      ____________________________________________________________
consensus             GGTGAATGCAGTGGCTATTTGTGTATAAAAAGCTCATGGCCTGGTGCATTCCGAACTCTT
 
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rJMFF019A02+          TATGGGGATCATGAAAGATATGAAACTACATACTTCAGTGCCTTCCCTGGCTATTATTTC
rJMSF019D10+          TATGGGGATCATGAAAGATATGAAACTACATACTTCAGTGCCTTCCCTGGCTATTATTTC
                      ____________________________________________________________
consensus             TATGGGGATCATGAAAGATATGAAACTACATACTTCAGTGCCTTCCCTGGCTATTATTTC
 
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rJMFF019A02+          ACTGGTGATGGCTGCAGCAGGGACAAGGATGGTTATCACTGGCTTACTGGAAGAGTTGAT
rJMSF019D10+          ACTGGTGATGGCTGCAGCAGGGACAAGGATGGTTATCACTGGCTTACTGGAAGAGTTGAT
                      ____________________________________________________________
consensus             ACTGGTGATGGCTGCAGCAGGGACAAGGATGGTTATCACTGGCTTACTGGAAGAGTTGAT
 
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rJMFF019A02+          GATGTTATTAATGTTAGTGGGCACCGTATCGGCACAGCTGAAGTGGAATCTGCTCTAGTT
rJMSF019D10+          GATGTTATTAATGTTAGTGGGCACCGTATCGGCACAGCTGAAGTGGAATCTGCTCTAGTT
                      ____________________________________________________________
consensus             GATGTTATTAATGTTAGTGGGCACCGTATCGGCACAGCTGAAGTGGAATCTGCTCTAGTT
 
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rJMFF019A02+          TCTCATCCTAAGTGTGCTGAAGCTGCTGTTGTTGGTGTCGAGCATGAGGTTAAAGGACAA
rJMSF019D10+          TCTCATCCTAAGTGTGCTGAAGCTGCTGTTGTTGGTGTCGAGCATGAGGTTAAAGGACAA
                      ____________________________________________________________
consensus             TCTCATCCTAAGTGTGCTGAAGCTGCTGTTGTTGGTGTCGAGCATGAGGTTAAAGGACAA
 
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rJMFF019A02+          GGAATATATGCATTTGTAACACTGGTTGATGGTGTTCCATATAGTGAAGAACTTAGAAAA
rJMSF019D10+          GGAATATATGCATTTGTAACACTGGTTGATGGTGTTCCATATAGTGAAGAACTTAGAAAA
                      ____________________________________________________________
consensus             GGAATATATGCATTTGTAACACTGGTTGATGGTGTTCCATATAGTGAAGAACTTAGAAAA
 
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rJMFF019A02+          GATCTTGTACTCAGAGTGAGAAAGCAGATTGGACCATTTGCCGCGCCTGACAAAATACAT
rJMSF019D10+          GATCTTGTACTCAGAGTGAGAAAGCAGATTGGACCATTTGCCGCGCCTGACAAAATACAT
                      ____________________________________________________________
consensus             GATCTTGTACTCAGAGTGAGAAAGCAGATTGGACCATTTGCCGCGCCTGACAAAATACAT
 
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rJMFF019A02+          TGGGCACCGGGTCTTCCAAAGACAAGGAGTGGGAAAATAATGAGGAGAATTTTGAGGAAA
rJMSF019D10+          TGGGCACCGGGTCTTCCAAAGACAAGGAGTGGGAAAATAATGAGGAGAATTTTGAGGAAA
                      ____________________________________________________________
consensus             TGGGCACCGGGTCTTCCAAAGACAAGGAGTGGGAAAATAATGAGGAGAATTTTGAGGAAA
 
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rJMFF019A02+          ATTGCTTCTAAGCAGTTAGATGAGCTTGGGGACACAAGCACATTGGCAGACCCTACGGTG
rJMSF019D10+          ATTGCTTCTAAGCAGTTAGATGAGCTTGGGGACACAAGCACATTGGCAGACCCTACGGTG
rJMFF048F15+                                                     TGGCAGACCCTACGGTG
                      ____________________________________________________________
consensus             ATTGCTTCTAAGCAGTTAGATGAGCTTGGGGACACAAGCACATTGGCAGACCCTACGGTG
 
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rJMFF019A02+          GTTGACCAACTTATTCATCTTGCTGATTCTTGAACTACTATACTTTGAGCTAAGGATGTT
rJMFF019I14+                                                          GCTAAGGATGTT
rJMSF019D10+          GTTGACCAACTTATTCATCTTGCTGATTCTTGAACTACTATACTTTGAGCTAAGGATGTT
rJMFF048F15+          GTTGACCAACTTATTCATCTTGCTGATTCTTGAACTACTATACTTTGAGCTAAGGATGTT
                      ____________________________________________________________
consensus             GTTGACCAACTTATTCATCTTGCTGATTCTTGAACTACTATACTTTGAGCTAAGGATGTT
 
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rJMFF019A02+          CAATTAGCTAGCTCAGCTCACATTACAATCAACTTCAATTCATTGCTTTCTAGA--TCAA
rJMFF019I14+          CAATTAGCTAGCTCAGCTCACATTACAATCAACTTCAATTCATTGCTTTCTAGA--TCAA
rJMSF019D10+          CAATTAGCTAGCTCAGCTCACATTACAATCAACTTCAATTCATTGCTTTCTAGA--TCAA
rJMFF048F15+          CAATTAGCTAGCTCAGCTCACACTACAATCAACTCTAATTCATTGCTTTCTAGACTCCTA
                      ____________________________________________________________
consensus             CAATTAGCTAGCTCAGCTCACATTACAATCAACTTCAATTCATTGCTTTCTAGA--TCAA
 
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rJMFF019A02+          TCAGTGGGCAATCCCGTGTAGCACAAGTTTGTAAAATTT                     
rJMFF019I14+          TCAGTGGGCAATCCCGTGTAGCACAAGTTTGTAAAATTTTCCCGAGGAAATAAATAAATT
rJMSF019D10+          TCAGTGGGCAATCCCGTGTAGCACAAGTTTGTAAAATTTTCCCGAGGAAATAAATAAATT
rJMFF048F15+          TCAGTGGGCAATCCCGTGTAGCACAAGTTTGTAAAATTTTCCCGAGGTCTTAAATAAATT
                      ____________________________________________________________
consensus             TCAGTGGGCAATCCCGTGTAGCACAAGTTTGTAAAATTTTCCCGAGGAAATAAATAAATT
 
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rJMFF019I14+          ATAGACAAGCAAAG                                              
rJMSF019D10+          ATAGACAAGCAAAG                                              
rJMFF048F15+          ATAGACAAGCAAAGTAAAACTCATCGTTGGACTTCTCCTCAATAGAAAATAAATTATTTG
                      ____________________________________________________________
consensus             ATAGACAAGCAAAGTAAAACTCATCGTTGGACTTCTCCTCAATAGAAAATAAATTATTTG