| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF047P20 | Sequence | 640 | 010606 (2) | ref|XP_009623407.1| | 280 | PREDICTED: polyadenylate-binding protein 7-like [Nicotiana tomentosiformis] | 596 | 008372 (3) | ref|XP_007204038.1| | 7e-41 | hypothetical protein PRUPE_ppa020841mg [Prunus persica] gb|EMJ05237.1| hypotheti |
| JMFN043F10 | Sequence | 618 | 008372 (3) | ref|XP_007204038.1| | 3e-38 | hypothetical protein PRUPE_ppa020841mg [Prunus persica] gb|EMJ05237.1| hypotheti | |||||
| JMSF010M07 | Sequence | 261 | 010606 (2) | ref|XP_003554408.1| | 65.1 | PREDICTED: polyadenylate-binding protein 7-like [Glycine max] | 701 | 008372 (3) | ref|XP_002264613.1| | 7e-56 | PREDICTED: polyadenylate-binding protein 7 [Vitis vinifera] emb|CBI30200.3| unna |
This contig is upended
. : . : . : . : . : . :
rJMSF010M07+ GAGCTAAGGGCTTTGTAAATTCAACTAGACCTTCCTTTCAAACTTCTCCAGTT
____________________________________________________________
consensus GAGCTAAGGGCTTTGTAAATTCAACTAGACCTTCCTTTCAAACTTCTCCAGTT
. : . : . : . : . : . :
JMFN043F10- GCTACTAGACAACATAGACAGAACAGGGGAAGGGTGCAGGGAAAT
rJMSF010M07+ CCTATGTTTCCCAATGCTACTAGACAACATAGACAGAACAGGGGAAGGGTGCAGGGAAAT
____________________________________________________________
consensus CCTATGTTTCCCAATGCTACTAGACAACATAGACAGAACAGGGGAAGGGTGCAGGGAAAT
. : . : . : . : . : . :
JMFN043F10- ATCCCTGCTCAATATGCAGCGCATGTGCAGCCAACTCAATCAGTGGCTTTAGCGAAAGAA
rJMSF010M07+ ATCCCTGCTCAATATGCAGCGCATGTGCAGCCAACTCAATCAGTGGCTTTAGCGAAAGAA
____________________________________________________________
consensus ATCCCTGCTCAATATGCAGCGCATGTGCAGCCAACTCAATCAGTGGCTTTAGCGAAAGAA
. : . : . : . : . : . :
JMFN043F10- TCTGTCAATCAGCAGCGTGCTGGGCAGGGGAAATATGTGTCTAGTGGTTCATT-CATGAC
rJMSF010M07+ TCTGTCAATCAGCAGCGTGCTGGGCAGGGGAAATATGTGTCTAGTGGTTCATTGCATGAC
rJMFF047P20+ TCAATCAGCAGCGTGCTGGGCAGGGGAAATATGTGTCTAGTGGTTCATTGCATGAC
____________________________________________________________
consensus TCTGTCAATCAGCAGCGTGCTGGGCAGGGGAAATATGTGTCTAGTGGTTCATTGCATGAC
. : . : . : . : . : . :
JMFN043F10- ATGAACAAGGCATCTACAGCGTCAACTGCTGTGCCCATTCCAGATGGATCTGGTGCTGAA
rJMSF010M07+ ATGAACAAGGCATCTACAGCGTCAACTGCTGTGCCCATTCCAGATGGATCTGGTGCTGAA
rJMFF047P20+ ATGAACAAGGCATCTACAGCGTCAACTGCTGTGCCCATTCCAGATGGATCTGGTGCTGAA
____________________________________________________________
consensus ATGAACAAGGCATCTACAGCGTCAACTGCTGTGCCCATTCCAGATGGATCTGGTGCTGAA
. : . : . : . : . : . :
JMFN043F10- GGACCAGAAATGTTGAGTAGTTTGCTTGCTGCAGCTTCTCCTGAGCAGCAGAAACAAATA
rJMSF010M07+ GGACCAGAAATGTTGAGTAGTTTGCTTGCTGCAGCTTCTCCTGAGCAGCAGAAACAAATA
rJMFF047P20+ GGACCAGAAATGTTGAGTAGTTTGCTTGCTGCAGCTTCTCCTGAGCAGCAGAAACAAATA
____________________________________________________________
consensus GGACCAGAAATGTTGAGTAGTTTGCTTGCTGCAGCTTCTCCTGAGCAGCAGAAACAAATA
. : . : . : . : . : . :
JMFN043F10- CTTGGAGAACGCCTTTATCCACTTGTCAGTGAACGCAATCCTGATCTTGCTGCAAAGATT
rJMSF010M07+ CTTGGAGAACGCCTTTATCCACTTGTCAGTGAACGCAATCCTGATCTTGCTGCAAAGATT
rJMFF047P20+ CTTGGAGAACGCCTTTATCCACTTGTCAGTGAACGCAATCCTGATCTTGCTGCAAAGATT
____________________________________________________________
consensus CTTGGAGAACGCCTTTATCCACTTGTCAGTGAACGCAATCCTGATCTTGCTGCAAAGATT
. : . : . : . : . : . :
JMFN043F10- ACGGGAATGCTGTTAGAGATGGACAACTCGGAGCTCCTCCTCCTGTTAGAGTCACCAGAA
rJMSF010M07+ ACGGGAATGCTGTTAGAGATGGACAACTCGGAGCTCCTCCTCCTGTTAGAGTCACCAGAA
rJMFF047P20+ ACGGGAATGCTGTTAGAGATGGACAACTCGGAGCTCCTCCTCCTGTTAGAGTCACCAGAA
____________________________________________________________
consensus ACGGGAATGCTGTTAGAGATGGACAACTCGGAGCTCCTCCTCCTGTTAGAGTCACCAGAA
. : . : . : . : . : . :
JMFN043F10- TCACTGGCAGCCAAGGTGGAAGAAGCTCTGCAGGTGCTCAAACTCTCTAAGGCTAAAATA
rJMSF010M07+ TCACTGGCAGCCAAGGTGGAAGAAGCTCTGCAGGTGCTCAAACTCTCTAAGGCTAAAATA
rJMFF047P20+ TCACTGGCAGCCAAGGTGGAAGAAGCTCTGCAGGTGCTCAAACTCTCTAAGGCTAAAATA
____________________________________________________________
consensus TCACTGGCAGCCAAGGTGGAAGAAGCTCTGCAGGTGCTCAAACTCTCTAAGGCTAAAATA
. : . : . : . : . : . :
JMFN043F10- TCGAATCCGGATGCCATTCATCCTAATTATATTTCTGCCGAGGTTGCGGTCAATTGAGAA
rJMSF010M07+ TCGAATCCGGATGCCATTCATCCTAATTATATTTCTGCCGAGGTTGCGGTCAATTGAGAA
rJMFF047P20+ TCGAATCCGGATGCCATTCATCCTAATTATATTTCTGCCGAGGTTGCGGTCAATTGAGAA
____________________________________________________________
consensus TCGAATCCGGATGCCATTCATCCTAATTATATTTCTGCCGAGGTTGCGGTCAATTGAGAA
. : . : . : . : . : . :
JMFN043F10- AACTCTTTTGTCTTTTTCTTTTATTCAAACATAGAGATTTTGCCAGGCTAGAGATACCAT
rJMSF010M07+ AACTCTTTTGTCTTTTTCTTTTATTCAAACATAGAGATTTTGCCAGGCTAGAGATACCAT
rJMFF047P20+ AACTCTTTTGTCTTTTTCTTTTATTCAAACATAGAGATTTTGCCAGGCTAGAGATACCAT
____________________________________________________________
consensus AACTCTTTTGTCTTTTTCTTTTATTCAAACATAGAGATTTTGCCAGGCTAGAGATACCAT
. : . : . : . : . : . :
JMFN043F10- GCGGCATTTATCTCATTTCAGTCCTTTCAA
rJMSF010M07+ GCGGCATTTATCTCATTTCAGTCCTTTCAAACTGTAGACTATTTCTGT
rJMFF047P20+ GCGGCATTTATCTCATTTCAGTCCTTTCAAACTGTAGACTATTTCTGTTTCAGCAACTTC
____________________________________________________________
consensus GCGGCATTTATCTCATTTCAGTCCTTTCAAACTGTAGACTATTTCTGTTTCAGCAACTTC
. : . : . : . : . : . :
rJMFF047P20+ GCTAACTTCTCGATTTAGAGTTTTACTTTAGTTTXXXXXXXXXXXXXXXXXXCTCTCCAG
____________________________________________________________
consensus GCTAACTTCTCGATTTAGAGTTTTACTTTAGTTTNNNNNNNNNNNNNNNNNNCTCTCCAG