Contig 008361:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046M08Sequence544002186 (3)ref|XP_009765706.1|8e-38PREDICTED: glutamate receptor 3.7 isoform X1 [Nicotiana sylvestris]389008361 (4)
JMFS060E10Sequence449008361 (4)
JMSF017M23Sequence261002186 (3)707008361 (4)ref|XP_009765707.1|1e-44PREDICTED: glutamate receptor 3.7 isoform X2 [Nicotiana sylvestris]
JMSF048I19Sequence781008361 (4)ref|XP_009765707.1|4e-56PREDICTED: glutamate receptor 3.7 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF017M23+ GT
rJMSF048I19+ GACTGATTTTGGCATCATTGGGCAGCCATTCGCGAAGAAAGGATGGGGGTTTGT
                      ____________________________________________________________
consensus GACTGATTTTGGCATCATTGGGCAGCCATTCGCGAAGAAAGGATGGGGGTTTGT
 
. : . : . : . : . : . :
rJMSF017M23+ TTTCCAGAAGGGTTCTCCTATAGCAGTCGACTTATCAACCTCAATCCTTAAACTCTCCGA
rJMSF048I19+ TTTCCAGAAGGGTTCTCCTATAGCAGTCGACTTATCAACCTCAATCCTTAAACTCTCCGA
                      ____________________________________________________________
consensus TTTCCAGAAGGGTTCTCCTATAGCAGTCGACTTATCAACCTCAATCCTTAAACTCTCCGA
 
. : . : . : . : . : . :
rJMSF017M23+ GAGCAAGAAGCTCTACGAGATCTACAAGAAATGGTTCTGCAGGCCAGACTGTCCGTCAGA
rJMSF048I19+ GAGCAAGAAGCTCTACGAGATCTACAAGAAATGGTTCTGCAGGCCAGACTGTCCGTCAGA
                      ____________________________________________________________
consensus GAGCAAGAAGCTCTACGAGATCTACAAGAAATGGTTCTGCAGGCCAGACTGTCCGTCAGA
 
. : . : . : . : . : . :
rJMSF017M23+ GAGGGCAAGAACACCAGAGCCCGACGAGCTCCAACTAAGCAGCTTCTGGGGACTCTATCT
rJMSF048I19+ GAGGGCAAGAACACCAGAGCCCGACGAGCTCCAACTAAGCAGCTTCTGGGGACTCTATCT
                      ____________________________________________________________
consensus GAGGGCAAGAACACCAGAGCCCGACGAGCTCCAACTAAGCAGCTTCTGGGGACTCTATCT
 
. : . : . : . : . : . :
rJMSF017M23+ TTTATGTGGCGCCATTACTGTCATCGCCCTGTTGATCTTCTTGCTCAAAACGGTTCGCCA
rJMSF048I19+ TTTATGTGGCGCCATTACTGTCATCGCCCTGTTGATCTTCTTGCTCAAAACGGTTCGCCA
                      ____________________________________________________________
consensus TTTATGTGGCGCCATTACTGTCATCGCCCTGTTGATCTTCTTGCTCAAAACGGTTCGCCA
 
. : . : . : . : . : . :
rJMSF017M23+ GTACATCCGGTTTAAAAGCAAGCAGAGGGACCCTTCTTCTTCTCCATCAGACACTGGCTT
rJMSF048I19+ GTACATCCGGTTTAAAAGCAAGCAGAGGGACCCTTCTTCTTCTCCATCAGACACTGGCTT
                      ____________________________________________________________
consensus GTACATCCGGTTTAAAAGCAAGCAGAGGGACCCTTCTTCTTCTCCATCAGACACTGGCTT
 
. : . : . : . : . : . :
rJMSF017M23+ CTCTAAGGTTGTCTACAATTTCTTTGACTTCATTGATGAGAAGGAAGAAGCCATCAAAAA
rJMSF048I19+ CTCTAAGGTTGTCTACAATTTCTTTGACTTCATTGATGAGAAGGAAGAAGCCATCAAAAA
JMFS060E10- TTTGACTTCATTGATGAGAAGGAAGAAGCCATCAAAAA
                      ____________________________________________________________
consensus CTCTAAGGTTGTCTACAATTTCTTTGACTTCATTGATGAGAAGGAAGAAGCCATCAAAAA
 
. : . : . : . : . : . :
rJMSF017M23+ CTTCTTTTCCCAGCAAGATAGTTCTTAGTTGTCCCAACTTATTAGCAGATAACAATGTAG
rJMSF048I19+ CTTCTTTTCCCAGCAAGATAGTTCTTAGTTGTCCCAACTTATTAGCAGATAACAATGTAG
JMFS060E10- CTTCTTTTCCCAGCAAGATAGTTCTTAGTTGTCCCAACTTATTAGCAGATAACAATGTAG
rJMFF046M08+ TCCCAACTTATTAGCAGATAACAATGTAG
                      ____________________________________________________________
consensus CTTCTTTTCCCAGCAAGATAGTTCTTAGTTGTCCCAACTTATTAGCAGATAACAATGTAG
 
. : . : . : . : . : . :
rJMSF017M23+ CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
rJMSF048I19+ CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
JMFS060E10- CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
rJMFF046M08+ CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
                      ____________________________________________________________
consensus CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
 
. : . : . : . : . : . :
rJMSF017M23+ TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
rJMSF048I19+ TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
JMFS060E10- TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
rJMFF046M08+ TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
                      ____________________________________________________________
consensus TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
 
. : . : . : . : . : . :
rJMSF017M23+ TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTCTCCCACCAAATCGGCCGTTAAGTA
rJMSF048I19+ TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTCTCCCACCAAATCGGCCGTTAAGTA
JMFS060E10- TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTCTCCCACCAAATCGGCCGTTAAGTA
rJMFF046M08+ TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTTTCCCACCAAATCGGCCGTTAAGTA
                      ____________________________________________________________
consensus TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTCTCCCACCAAATCGGCCGTTAAGTA
 
. : . : . : . : . : . :
rJMSF017M23+ CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
rJMSF048I19+ CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
JMFS060E10- CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
rJMFF046M08+ CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
                      ____________________________________________________________
consensus CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
 
. : . : . : . : . : . :
rJMSF017M23+ TGTTTTCTGCATGTAATTCAGATATAGTATCATGTAC
rJMSF048I19+ TGTTTTCTGCATGTAATTCAGATATAGTATCATGTACATATAGTGATATAGGTTGCCTCC
JMFS060E10- TGTTTTCTGCATGTAATTCAGATATAGTATCATGTACATATAGTGATATAGGTTGCCTCC
rJMFF046M08+ TGTTTTTTGCATGTAATTCAGATATAGTATCATGTACATATAGTGATATAGGTTGCCTCC
                      ____________________________________________________________
consensus TGTTTTCTGCATGTAATTCAGATATAGTATCATGTACATATAGTGATATAGGTTGCCTCC
 
. : . : . : . : . : . :
rJMSF048I19+ AACTTT
JMFS060E10- AACTTTTAAAATGCAGAATATTCACCATATATAGAATTTTTGAGTTGATTT
rJMFF046M08+ AACTTTTAAAATGCAGAATATTCCCCATATATAGAATTTTTGAGTTGATTTAAAAAAAAA
                      ____________________________________________________________
consensus AACTTTTAAAATGCAGAATATTCCCCATATATAGAATTTTTGAGTTGATTTAAAAAAAAA