Contig 008361:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF017M23+                                                                    GT
rJMSF048I19+                GACTGATTTTGGCATCATTGGGCAGCCATTCGCGAAGAAAGGATGGGGGTTTGT
                      ____________________________________________________________
consensus                   GACTGATTTTGGCATCATTGGGCAGCCATTCGCGAAGAAAGGATGGGGGTTTGT
 
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rJMSF017M23+          TTTCCAGAAGGGTTCTCCTATAGCAGTCGACTTATCAACCTCAATCCTTAAACTCTCCGA
rJMSF048I19+          TTTCCAGAAGGGTTCTCCTATAGCAGTCGACTTATCAACCTCAATCCTTAAACTCTCCGA
                      ____________________________________________________________
consensus             TTTCCAGAAGGGTTCTCCTATAGCAGTCGACTTATCAACCTCAATCCTTAAACTCTCCGA
 
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rJMSF017M23+          GAGCAAGAAGCTCTACGAGATCTACAAGAAATGGTTCTGCAGGCCAGACTGTCCGTCAGA
rJMSF048I19+          GAGCAAGAAGCTCTACGAGATCTACAAGAAATGGTTCTGCAGGCCAGACTGTCCGTCAGA
                      ____________________________________________________________
consensus             GAGCAAGAAGCTCTACGAGATCTACAAGAAATGGTTCTGCAGGCCAGACTGTCCGTCAGA
 
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rJMSF017M23+          GAGGGCAAGAACACCAGAGCCCGACGAGCTCCAACTAAGCAGCTTCTGGGGACTCTATCT
rJMSF048I19+          GAGGGCAAGAACACCAGAGCCCGACGAGCTCCAACTAAGCAGCTTCTGGGGACTCTATCT
                      ____________________________________________________________
consensus             GAGGGCAAGAACACCAGAGCCCGACGAGCTCCAACTAAGCAGCTTCTGGGGACTCTATCT
 
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rJMSF017M23+          TTTATGTGGCGCCATTACTGTCATCGCCCTGTTGATCTTCTTGCTCAAAACGGTTCGCCA
rJMSF048I19+          TTTATGTGGCGCCATTACTGTCATCGCCCTGTTGATCTTCTTGCTCAAAACGGTTCGCCA
                      ____________________________________________________________
consensus             TTTATGTGGCGCCATTACTGTCATCGCCCTGTTGATCTTCTTGCTCAAAACGGTTCGCCA
 
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rJMSF017M23+          GTACATCCGGTTTAAAAGCAAGCAGAGGGACCCTTCTTCTTCTCCATCAGACACTGGCTT
rJMSF048I19+          GTACATCCGGTTTAAAAGCAAGCAGAGGGACCCTTCTTCTTCTCCATCAGACACTGGCTT
                      ____________________________________________________________
consensus             GTACATCCGGTTTAAAAGCAAGCAGAGGGACCCTTCTTCTTCTCCATCAGACACTGGCTT
 
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rJMSF017M23+          CTCTAAGGTTGTCTACAATTTCTTTGACTTCATTGATGAGAAGGAAGAAGCCATCAAAAA
rJMSF048I19+          CTCTAAGGTTGTCTACAATTTCTTTGACTTCATTGATGAGAAGGAAGAAGCCATCAAAAA
JMFS060E10-                                 TTTGACTTCATTGATGAGAAGGAAGAAGCCATCAAAAA
                      ____________________________________________________________
consensus             CTCTAAGGTTGTCTACAATTTCTTTGACTTCATTGATGAGAAGGAAGAAGCCATCAAAAA
 
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rJMSF017M23+          CTTCTTTTCCCAGCAAGATAGTTCTTAGTTGTCCCAACTTATTAGCAGATAACAATGTAG
rJMSF048I19+          CTTCTTTTCCCAGCAAGATAGTTCTTAGTTGTCCCAACTTATTAGCAGATAACAATGTAG
JMFS060E10-           CTTCTTTTCCCAGCAAGATAGTTCTTAGTTGTCCCAACTTATTAGCAGATAACAATGTAG
rJMFF046M08+                                         TCCCAACTTATTAGCAGATAACAATGTAG
                      ____________________________________________________________
consensus             CTTCTTTTCCCAGCAAGATAGTTCTTAGTTGTCCCAACTTATTAGCAGATAACAATGTAG
 
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rJMSF017M23+          CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
rJMSF048I19+          CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
JMFS060E10-           CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
rJMFF046M08+          CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
                      ____________________________________________________________
consensus             CTAGTATGAAGTTGTTGCATCAGAATTATCAGTTTCAGTGTGTACATACACAAGTAGTTA
 
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rJMSF017M23+          TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
rJMSF048I19+          TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
JMFS060E10-           TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
rJMFF046M08+          TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
                      ____________________________________________________________
consensus             TATACTTATATGTTGTCCGCACGGGTAGGTCAGTTGGTTCCTAGTGACAGATTGTGGCAA
 
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rJMSF017M23+          TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTCTCCCACCAAATCGGCCGTTAAGTA
rJMSF048I19+          TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTCTCCCACCAAATCGGCCGTTAAGTA
JMFS060E10-           TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTCTCCCACCAAATCGGCCGTTAAGTA
rJMFF046M08+          TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTTTCCCACCAAATCGGCCGTTAAGTA
                      ____________________________________________________________
consensus             TGAAGCGGAATCGAGCCCTAGCAGTTTCATCGGTTCTCCCACCAAATCGGCCGTTAAGTA
 
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rJMSF017M23+          CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
rJMSF048I19+          CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
JMFS060E10-           CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
rJMFF046M08+          CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
                      ____________________________________________________________
consensus             CCCGTGATTTACCCGGCTTTTGGGTTGAGGAATTTCACATTTTGTGGGTAAATAGCTATA
 
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rJMSF017M23+          TGTTTTCTGCATGTAATTCAGATATAGTATCATGTAC                       
rJMSF048I19+          TGTTTTCTGCATGTAATTCAGATATAGTATCATGTACATATAGTGATATAGGTTGCCTCC
JMFS060E10-           TGTTTTCTGCATGTAATTCAGATATAGTATCATGTACATATAGTGATATAGGTTGCCTCC
rJMFF046M08+          TGTTTTTTGCATGTAATTCAGATATAGTATCATGTACATATAGTGATATAGGTTGCCTCC
                      ____________________________________________________________
consensus             TGTTTTCTGCATGTAATTCAGATATAGTATCATGTACATATAGTGATATAGGTTGCCTCC
 
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rJMSF048I19+          AACTTT                                                      
JMFS060E10-           AACTTTTAAAATGCAGAATATTCACCATATATAGAATTTTTGAGTTGATTT         
rJMFF046M08+          AACTTTTAAAATGCAGAATATTCCCCATATATAGAATTTTTGAGTTGATTTAAAAAAAAA
                      ____________________________________________________________
consensus             AACTTTTAAAATGCAGAATATTCCCCATATATAGAATTTTTGAGTTGATTTAAAAAAAAA