| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031P19 | Sequence | 578 | 008359 (8) | ref|XP_006339456.1| | 3e-69 | PREDICTED: shaggy-related protein kinase theta-like [Solanum tuberosum] | 545 | 008359 (8) | emb|CAA11862.1| | 6e-04 | shaggy kinase 7 [Petunia x hybrida] |
| JMFF037M19 | Sequence | 614 | 008359 (8) | emb|CAA11862.1| | 2e-08 | shaggy kinase 7 [Petunia x hybrida] | |||||
| JMFF046I20 | Sequence | 555 | 013246 (4) | emb|CDP08875.1| | 1e-47 | unnamed protein product [Coffea canephora] | 109 | 008359 (8) | |||
| JMFF047E08 | Sequence | 446 | 008359 (8) | ref|XP_006339456.1| | 6e-70 | PREDICTED: shaggy-related protein kinase theta-like [Solanum tuberosum] | 349 | 008359 (8) | |||
| JMSF008D14 | Sequence | 333 | 013246 (4) | dbj|BAO02536.1| | 8e-18 | predicted Shaggy-like kinase ortholog [Nicotiana alata] | 740 | 008359 (8) | ref|XP_006339456.1| | 1e-77 | PREDICTED: shaggy-related protein kinase theta-like [Solanum tuberosum] |
| JMSF039D03 | Sequence | 717 | 013246 (4) | emb|CDP08875.1| | 4e-88 | unnamed protein product [Coffea canephora] | 615 | 008359 (8) | emb|CAA11862.1| | 6e-15 | shaggy kinase 7 [Petunia x hybrida] |
This contig is upended
. : . : . : . : . : . :
JMFF031P19- TTAAGATTCTCGGGA
JMFF047E08- TTAAGATTCTCGGGA
rJMSF008D14+ GGGAGAAAGTGGTGTTGATCAACTAGTTGAGATCATTAAGATTCTCGGGA
____________________________________________________________
consensus GGGAGAAAGTGGTGTTGATCAACTAGTTGAGATCATTAAGATTCTCGGGA
. : . : . : . : . : . :
JMFF031P19- CACCAACTAGGGAGGAGATTAAGTGTATGAATCCGAACTACACGGAATTCAAGTTCCCTC
JMFF047E08- CACCAACTAGGGAGGAGATTAAGTGTATGAATCCGAACTACACGGAATTCAAGTTCCCTC
rJMSF008D14+ CACCAACTAGGGAGGAGATTAAGTGTATGAATCCGAACTACACGGAATTCAAGTTCCCTC
____________________________________________________________
consensus CACCAACTAGGGAGGAGATTAAGTGTATGAATCCGAACTACACGGAATTCAAGTTCCCTC
. : . : . : . : . : . :
JMFF031P19- AAATCAAGGCTCATCCCTGGCACAAGGTTTTCCATAAAAGAATGCCTCATGAGGCAGTGG
JMFF047E08- AAATCAAGGCTCATCCCTGGCACAAGGTTTTCCATAAAAGAATGCCTCATGAGGCAGTGG
rJMSF008D14+ AAATCAAGGCTCATCCCTGGCACAAGGTTTTCCATAAAAGAATGCCTCATGAGGCAGTGG
____________________________________________________________
consensus AAATCAAGGCTCATCCCTGGCACAAGGTTTTCCATAAAAGAATGCCTCATGAGGCAGTGG
. : . : . : . : . : . :
JMFF031P19- ACCTAGTTTCGAGATTGCTCCAGTATTCACCGACTCTGCGCTGTACTGCTTTGGAAGCTT
JMFF047E08- ACCTAGTTTCGAGATTGCTCCAGTATTCACCGACTCTGCGCTGTACTGCTTTGGAAGCTT
rJMSF008D14+ ACCTAGTTTCGAGATTGCTCCAGTATTCACCGACTCTGCGCTGTACTGCTTTGGAAGCTT
rJMSF039D03+ TGCTTTGGAAGCTT
____________________________________________________________
consensus ACCTAGTTTCGAGATTGCTCCAGTATTCACCGACTCTGCGCTGTACTGCTTTGGAAGCTT
. : . : . : . : . : . :
JMFF031P19- GTGCACACCCGTTCTTCGATGCTCTAAGGGACCCAAATGCAAGCTTGCCAAATGGGAGAC
JMFF047E08- GTGCACACCCGTTCTTCGATGCTCTAAGGGACCCAAATGCAAGCTTGCCAAATGGGAGAC
rJMSF008D14+ GTGCACACCCGTTCTTCGATGCTCTAAGGGACCCAAATGCAAGCTTGCCAAATGGGAGAC
rJMSF039D03+ GTGCNCNCCCGTTTTTCGATGCTTTAAGGGACCCNAANGCNAGCTTGCCAAANGGGAGAC
rJMFF037M19+ TAAGGGACCCAAATGCAAGCTTACCAAATGGGAGAC
____________________________________________________________
consensus GTGCACACCCGTTCTTCGATGCTCTAAGGGACCCAAATGCAAGCTTGCCAAATGGGAGAC
. : . : . : . : . : . :
JMFF031P19- CTCTGCCGCCTCTATTTAACTTTACCCCTCAAGAACTCTCTGGTGTACCTGATGAACTGC
JMFF047E08- CTCTGCCGCCTCTATTTAACTTTACCCCTCAAGAACTCTCTGGTGTACCTGATGAACTGC
rJMSF008D14+ CTCTGCCGCCTCTATTTAACTTTACCCCTCAAGAACTCTCTGGTGTACCTGATGAACTGC
rJMSF039D03+ CTNTGCCGCCTNTATTTAACTTTACCCCTCNAGAACTNTTTGGNGTACCNGATGAACTGC
rJMFF031P19+ ATTTAACTTTACCCCTCAAGAACTNTTTGGTGTACCTGATGAACTGC
rJMFF037M19+ CTNTGCCGCCTNTATTTAACTTTACCCCTCAAGAACTTTCTGGTGTACCTGATGAACTGN
____________________________________________________________
consensus CTCTGCCGCCTCTATTTAACTTTACCCCTCAAGAACTCTCTGGTGTACCTGATGAACTGC
. : . : . : . : . : . :
JMFF031P19- GGAACCGCCTTATTCCCGAGCATGCAAGGAAATGAACTTTTGAAGAGGGTGGTTTATTTA
JMFF047E08- GGAACCGCCTTATTCCCGAGCATGCAAGGAAATGAACTTTTGAAGAGGGTGGTTTATTTA
rJMSF008D14+ GGAACCGCCTTATTCCCGAGCATGCAAGGAAATGAACTTTTGAAGAGGGTGGTTTATTTA
rJMSF039D03+ GGAACCNCCTTATTNCCGAGCNTGCAAGGAAANGAACTTTTGAAGAGGGNGGNTTATTTA
rJMFF031P19+ GGAACCGCCTTATTCCCGAGCATGCAAGGAAATGAACTTTTGAAGAGGGTGGTTTATTTA
rJMFF037M19+ GGAACCNCCTTATTCCCGAGCATGCAAGGAAATGAACTTTTGAAGAGGGTGGTTTATTTA
____________________________________________________________
consensus GGAACCGCCTTATTCCCGAGCATGCAAGGAAATGAACTTTTGAAGAGGGTGGTTTATTTA
. : . : . : . : . : . :
JMFF031P19- GGCTCTGTAAAGGTTAGACCCGCCAGCCAGTATGATCACTGCTATTTCGCCCCGGTAAAG
JMFF047E08- GGCTCTGTAAAGGTTAGACCCGCCAGCCAGTATGATCACTGCTATTTCGCCCCGGTAA
rJMSF008D14+ GGCTCTGTAAAGGTTAGACCCGCCAGCCAGTATGATCACTGCTATTTCGCCCCGGTAAAG
rJMSF039D03+ GGCTCNGTAAAGGTTAGNCCCNCCNGCCNGTATGATCNCTGCTATTTCGCCCCGGTAAAG
rJMFF031P19+ GGCTNTGTAAAGGTTAGACCCGCCAGCCAGTATGATCACTGCTATTTCGCCCCGGTAAAG
rJMFF037M19+ GGCTNTGTAAAGGTTAGACCCGCCAGCCAGTATGATCACTGNTATTTCGCCCCGGTAAAG
____________________________________________________________
consensus GGCTCTGTAAAGGTTAGACCCGCCAGCCAGTATGATCACTGCTATTTCGCCCCGGTAAAG
. : . : . : . : . : . :
JMFF031P19- GAGGATGCTTTCCTCCATTTTTTTAAAAATCTAGTTGAGAAGAAAGGTGAAGGCAAGTTG
rJMSF008D14+ GAGGATGCTTTCCTCCA-TTTTTTAAAAATCTAGTTGAGAAGAAAGGTGAAGGCAAGTTG
rJMSF039D03+ GNGGATGCTTTCCTCCN-TTTTTTAAAAATCTAGTTGNGAAGAAAGGNGAAGGCAAGTTG
rJMFF031P19+ GAGGATGCTTTCCTCCATTTTTTTAAAAATNTAGTTGAGAAGAAAGGTGAAGGCAAGTTG
rJMFF047E08+ TGAAGGCAAGTTG
rJMFF037M19+ GAGGATGCTTTCCTCCA-TTTTTTAAAAATTTAGTTGAGAAGAAAGGNGAAGGCAAGTTG
____________________________________________________________
consensus GAGGATGCTTTCCTCCATTTTTTTAAAAATCTAGTTGAGAAGAAAGGTGAAGGCAAGTTG
. : . : . : . : . : . :
JMFF031P19- ATCCATCAAAGCATTTTTTATTTCTTATTTTTTGGGGAATTTGCTGGCAAGACTTTGAAG
rJMSF008D14+ ATCCATCAAAGCATTTTTTATTTCTTATTTTTTGGGGAATTTGCTGGCAAGACTTTGAAG
rJMSF039D03+ ATCCNTCAAAGCNTTTTTTATTTNTTATTTTTTGGGGAATTTGCTGGCNAGACTTTGAAG
rJMFF031P19+ ATCCATCAAAGCATTTTTTATTTNTTATTTTTTGGGGAATTTGCTGGCAAGACTTTGAAG
rJMFF047E08+ ATCCATCAAAGCATTTTTTATTTCTTATTTTTTGGGGAATTTGCTGGCAAGACTTTGAAG
rJMFF037M19+ ATCCATCAAAGCATTTTTTATTTTTTATTTTTTGGGGAATTTGCTGGCAAGACTTTGAAG
____________________________________________________________
consensus ATCCATCAAAGCATTTTTTATTTCTTATTTTTTGGGGAATTTGCTGGCAAGACTTTGAAG
. : . : . : . : . : . :
JMFF031P19- CAAACGTGAAAGGGATTGCTTGG
rJMSF008D14+ CAAACGTGAAAGGGATTGCTTGGCAATGAGATATTCTTATATTTATTCGTTAGTTTATGT
rJMSF039D03+ CNAACGNGAAAGGGATTGCTTGGCNATGAGATATTNTTATANTTATTCGTTAGNTTATGN
rJMFF031P19+ CAAACGTGAAAGGGATTGCTTGGCAATGAGATATTNTTATATTTATTCGTTAGTTTATGT
rJMFF047E08+ CAAACGTGAAAGGGATTGCTTGGCAATGAGATATTCTTATATTTATTCGTTAGTTTATGT
rJMFF037M19+ CAAACGTGAAAGGGATTGCTTGGCAATGAGATATTNTTATATTTATTCGTTAGTTTATGN
____________________________________________________________
consensus CAAACGTGAAAGGGATTGCTTGGCAATGAGATATTCTTATATTTATTCGTTAGTTTATGT
. : . : . : . : . : . :
rJMSF008D14+ GTAATTATTTATGGGATGNTAGATCAGCGNTTTGTAGCAGTGTTTAGTTTGTGGGGGCGN
rJMSF039D03+ GTAATTATTTATGGGATGTTAGATCNGCGTTTTGTAGCNGNGTTTAGTTTGNGGGGGNGT
rJMFF031P19+ GTAATTATTTATGGGATGTTAGATCAGCGTTTTGTAGCAGTGTTTAGTTTGTGGGGGTGT
rJMFF047E08+ GTAATTATTTATGGGATGTTAGATCAGCGTTTTGTAGCAGTGTTTAGTTTGTGGGGGTGT
rJMFF037M19+ GTAATTATTTATGGGATGTTAGATCAGCGTTTTGTAGCAGTGTTTAGTTTGTGGGGGTGT
____________________________________________________________
consensus GTAATTATTTATGGGATGTTAGATCAGCGTTTTGTAGCAGTGTTTAGTTTGTGGGGGTGT
. : . : . : . : . : . :
rJMSF008D14+ TTGTTTGCCTTCAAACTGGACATAGTCATAG
rJMSF039D03+ TTGTTTGCCTTCNAACNGGACNTAGTCATAGCCCGATATATTTTGCCGTAGGNTTATTAC
rJMFF031P19+ TTGTTTGCCTTCAAACTGGACATAGTCATAGCCAGATATATTTTGCCGTAGGATTATTAC
rJMFF047E08+ TTGTTTGCCTTCAAACTGGACATAGTCATAGCCAGATATATTTTGCCGTAGGATTATTAC
rJMFF037M19+ TTGTTTGCCTTCAAACTGGACATAGTCATAGCCAGATATATTTTGCCGTAGGATTATTAC
____________________________________________________________
consensus TTGTTTGCCTTCAAACTGGACATAGTCATAGCCAGATATATTTTGCCGTAGGATTATTAC
. : . : . : . : . : . :
rJMSF039D03+ CCTTTTGTTTGTTCCC
rJMFF031P19+ CATTTTGTTTGTTCCCACTTTACTCGTCTCATAGGAATGTGAAGAATCTTTCATTTTTTT
rJMFF047E08+ CATTTTGTTTGTTCCCACTTTACTCGTCTCATAGGAATGTGAAGAATCTTTCA-TTTTTT
rJMFF037M19+ CATTTTGTTTGTTCCCNCTTTACTCGTNTCATAGGAATGTGAAGAATCTTTCATTTTTTT
rJMFF046I20+ TTCCCCCTTTACTCGTTTCATAGGAATGTGAAGAATCTTTCATTTTTTT
____________________________________________________________
consensus CATTTTGTTTGTTCCCACTTTACTCGTCTCATAGGAATGTGAAGAATCTTTCATTTTTTT
. : . : . : . : . : . :
rJMFF031P19+ TTT
rJMFF047E08+ TTTTCATTATTGAACGAACTATGAATATTAT
rJMFF037M19+ TTTTCATTATTGAACGAACTATGAATATTAT
rJMFF046I20+ TTTTCATTATTGAACGAACTATGAATATTATTGAACGAACTATGAAGTTTCCCTTTTGGT
____________________________________________________________
consensus TTTTCATTATTGAACGAACTATGAATATTATTGAACGAACTATGAAGTTTCCCTTTTGGT