Contig 008358:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011F11Sequence521006083 (4)ref|XP_004235329.1|7e-45PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop727008358 (4)ref|XP_009776009.1|1e-45PREDICTED: bromodomain-containing protein DDB_G0280777 [Nicotiana sylvestris]
JMFF019I24Sequence493006083 (4)ref|XP_004235329.1|4e-39PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop176008358 (4)
JMFF040L22Sequence495006083 (4)ref|XP_004235329.1|5e-38PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop739008358 (4)ref|XP_009776009.1|2e-54PREDICTED: bromodomain-containing protein DDB_G0280777 [Nicotiana sylvestris]
JMFF046I05Sequence634006083 (4)ref|XP_004235329.1|5e-40PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop604008358 (4)ref|XP_004235329.1|5e-26PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop

Alignment

This contig is upended


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rJMFF040L22+                                       TACTGCGACATTTGAGAAACAAGTACTCGCA
                      ____________________________________________________________
consensus                                          TACTGCGACATTTGAGAAACAAGTACTCGCA
 
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rJMFF040L22+          TTTAATATAATTTCGAGGAAAAGAGAACAAGGGGAATTCCGGACAGAGGAGAAACTGCAA
rJMFF011F11+             AATATAATTTCGAGGAAAAGAGAACAAGGGGAATTCCGGACAGAGGAGAAACTGCAA
                      ____________________________________________________________
consensus             TTTAATATAATTTCGAGGAAAAGAGAACAAGGGGAATTCCGGACAGAGGAGAAACTGCAA
 
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rJMFF040L22+          ATCGAGCAGATGCTAGTGCAAGAAGAGAAGTTGGCATTCTCTGAAATGATGGACATGAGG
rJMFF011F11+          ATCGAGCAGATGCTAGTGCAAGAAGAGAAGTTGGCATTCTCTGAAATGATGGACATGAGG
                      ____________________________________________________________
consensus             ATCGAGCAGATGCTAGTGCAAGAAGAGAAGTTGGCATTCTCTGAAATGATGGACATGAGG
 
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rJMFF040L22+          CAGAAGGCAGGGCGGGAGAGTCATGAAGCTAATATGCAAATGGCAGCTATGGTTCAAGCG
rJMFF011F11+          CAGAAGGCAGGGCGGGAGAGTCATGAAGCTAATATGCAAATGGCAGCTATGGTTCAAGCG
rJMFF046I05+                                                                CAAGCG
                      ____________________________________________________________
consensus             CAGAAGGCAGGGCGGGAGAGTCATGAAGCTAATATGCAAATGGCAGCTATGGTTCAAGCG
 
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rJMFF040L22+          GAGCAGGCTCGAGCGGAATCTCAAGCGCGTGCTGAGATGATGTCCCGAGGACCAATTCGA
rJMFF011F11+          GAGCAGGCTCGAGCGGAATCTCAAGCGCGTGCTGAGATGATGTCCCGAGGACCAATTCGA
rJMFF046I05+          GAGCAGGCTCGAGCGGAATCTCAAGCGCGTGCTGAGATGATGTCCCGAGGACCAATTCGA
                      ____________________________________________________________
consensus             GAGCAGGCTCGAGCGGAATCTCAAGCGCGTGCTGAGATGATGTCCCGAGGACCAATTCGA
 
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rJMFF040L22+          GCAAGTGCACTTGGGCCTCGAGGCGGCAATATTCTGATGGGTCATGATGGTGGGGAGCAA
rJMFF011F11+          GCAAGTGCACTTGGGCCTCGAGGCGGCAATATTCTGATGGGTCATGATGGTGGGGAGCAA
rJMFF046I05+          GCAAGTGCACTTGGGCCTCGAGGCGGCAATATTCTGATGGGTCATGATGGTGGGGAGCAA
                      ____________________________________________________________
consensus             GCAAGTGCACTTGGGCCTCGAGGCGGCAATATTCTGATGGGTCATGATGGTGGGGAGCAA
 
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rJMFF040L22+          GTGCAGGAAGTGAAAGATGAAGAAATGATGAATGGTTGGGGTAACAACACACAGAAGGAT
rJMFF011F11+          GTGCAGGAAGTGAAAGATGAAGAAATGATGAATGGTTGGGGTAACAACACACAGAAGGAT
rJMFF046I05+          GTGCAGGAAGTGAAAGATGAAGAAATGATGAATGGTTGGGGTAACAACACACAGAAGGAT
                      ____________________________________________________________
consensus             GTGCAGGAAGTGAAAGATGAAGAAATGATGAATGGTTGGGGTAACAACACACAGAAGGAT
 
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rJMFF040L22+          GAAAAGGAGCCTTCAGAGGATTTTCTGAATGATGAAGAAACAGAGAATGGAGAAGGTGGT
rJMFF011F11+          GAAAAGGAGCCTTCAGAGGATTTTCTGAATGATGAAGAAACAGAGAATGGAGAAGGTGGT
rJMFF046I05+          GAAAAGGAGCCTTCAGAGGATTTTCTGAATGATGAAGAAACAGAGAATGGAGAAGGTGGT
                      ____________________________________________________________
consensus             GAAAAGGAGCCTTCAGAGGATTTTCTGAATGATGAAGAAACAGAGAATGGAGAAGGTGGT
 
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rJMFF040L22+          GGTGGTATTCAGAGCGACTGGCGTGGAGGGGGAGAGTTGGATCTCAACACAAGATGAATC
rJMFF011F11+          GGTGGTATTCAGAGCGACTGGCGTGGAGGGGGAGAGTTGGATCTCAACACAAGATGAATC
rJMFF046I05+          GGTGGTATTCAGAGCGACTGGCGTGGAGGGGGAGAGTTGGATCTCAACACAAGATGAATC
                      ____________________________________________________________
consensus             GGTGGTATTCAGAGCGACTGGCGTGGAGGGGGAGAGTTGGATCTCAACACAAGATGAATC
 
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rJMFF040L22+          AATATGAATCTTTACAAGCAGAGGCATAGACAGTTGGCTGGCTTGTGTACCAACTACCAA
rJMFF011F11+          AATATGAATCTTTACAAGCAGAGGCATAGACAGTTGGCTGGCTTGTGTACCAACTACCAA
rJMFF046I05+          AATATGAATCTTTACAAGCAGAGGCATAGACAGTTGGCTGGCTTGTGTACCAACTACCAA
                      ____________________________________________________________
consensus             AATATGAATCTTTACAAGCAGAGGCATAGACAGTTGGCTGGCTTGTGTACCAACTACCAA
 
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rJMFF040L22+          CTACCAGGGAAGAAGAAGCAGCAAGAGAAACGTTACAGTTACACTCCCTTTTAACTTGTT
rJMFF019I24+           TACCAGGGAAGAAGAAGCAGCAAGAGAAACGTTACAGTTACACTCCCTTTTANCTTGTT
rJMFF011F11+          CTACCAGGGAAGAAGAAGCAGCAAGAGAAACGTTACAGTTACACTCCCTTTTAACTTGTT
rJMFF046I05+          CTACCAGGGAAGAAGAAGCAGCAAGAGAAACGTTACAGTTACACTCCCTTTTAACTTGTT
                      ____________________________________________________________
consensus             CTACCAGGGAAGAAGAAGCAGCAAGAGAAACGTTACAGTTACACTCCCTTTTAACTTGTT
 
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rJMFF040L22+          ATGATATGATTTTTGTGTCAGGGATTGTTGTGTTGTACAGAAGCTGTACCTTCAAATCAT
rJMFF019I24+          ATGATATGATTTTTGTGTCAGGGATTGTTGTGTTGTACAGAAGCTGTACCTTCAAATCAT
rJMFF011F11+          ATGATATGATTTTTGTGTCAGGGATTGTTGTGTTGTACAGAAGCTGTACCTTCAAATCAT
rJMFF046I05+          ATGATATGATTTTTGTGTCAGGGATTGTTGTGTTGTACAGAAGCTGTACCTTCAAATCAT
                      ____________________________________________________________
consensus             ATGATATGATTTTTGTGTCAGGGATTGTTGTGTTGTACAGAAGCTGTACCTTCAAATCAT
 
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rJMFF040L22+          CTCTTCAATTGTACTCTTACTAGGCA                                  
rJMFF019I24+          CTCTTCAATTGTACTCTTACTAGGCACAAATTTTTAGGGAAATGCAGAATCTATCTC   
rJMFF011F11+          CTCTTCAATTGTACTCTTACTAGGCACAAATTTTTAGGGAAATGCAGAATCTATCTCCAA
rJMFF046I05+          CTCTTCAATTGTACTCTTACTAGGC--AAATTTTTAGGGAAATGCAGAATCTATCTCCAA
                      ____________________________________________________________
consensus             CTCTTCAATTGTACTCTTACTAGGCACAAATTTTTAGGGAAATGCAGAATCTATCTCCAA
 
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rJMFF011F11+          TTGCTCTAAT                                                  
rJMFF046I05+          TTGCTCTAATTAATGATTGAAAATAACTCGGTCGAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TTGCTCTAATTAATGATTGAAAATAACTCGGTCGAAAAAAAAAAAAAAACTCTCCAGGGT