Contig 008356:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046E14Sequence561009856 (15)ref|XP_009629004.1|5e-55PREDICTED: putative cytochrome c oxidase subunit 5b-like [Nicotiana tomentosifo526008356 (2)emb|CDP03944.1|2e-33unnamed protein product [Coffea canephora]
JMSF011E06Sequence454019932ref|XP_008244699.1|2e-26PREDICTED: auxin-induced in root cultures protein 12-like [Prunus mume]756008356 (2)ref|XP_008244702.1|6e-91PREDICTED: auxin-induced in root cultures protein 12 [Prunus mume]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF011E06+ TGGTGATTCCAGGCTCACGAA
                      ____________________________________________________________
consensus TGGTGATTCCAGGCTCACGAA
 
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rJMSF011E06+ GAAGAATATTCATGGAATACTTAATGCAGTCAGCTGGGGAGTTCTGTTTCCATTNGGAGT
                      ____________________________________________________________
consensus GAAGAATATTCATGGAATACTTAATGCAGTCAGCTGGGGAGTTCTGTTTCCATTNGGAGT
 
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rJMSF011E06+ CATAATCGCGAGGTACTTGAGAACATTCCAATCTGCAGATCCAGCGTGGTTTTATCTTCA
                      ____________________________________________________________
consensus CATAATCGCGAGGTACTTGAGAACATTCCAATCTGCAGATCCAGCGTGGTTTTATCTTCA
 
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rJMSF011E06+ TGTTGCTTGCCAGTTAGCTGCCTATGTGATTGGAGTTGCTGGCTGGGGAACTGGCCTTAA
                      ____________________________________________________________
consensus TGTTGCTTGCCAGTTAGCTGCCTATGTGATTGGAGTTGCTGGCTGGGGAACTGGCCTTAA
 
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rJMSF011E06+ GCTAGGAAGTCAGTCAAAGGGTGTTATGTACAGTGATCATCGCAATATTGGGATTGCACT
                      ____________________________________________________________
consensus GCTAGGAAGTCAGTCAAAGGGTGTTATGTACAGTGATCATCGCAATATTGGGATTGCACT
 
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rJMSF011E06+ CTTCAGTCTTGCAACAGTGCAGATGTTTGCATTACTATTGAGACCCAAGAAGGATCACAA
rJMFF046E14+ CAGTGCAGATGTTTGCATTACTATTGAGACCCAAGAAGGATCACAA
                      ____________________________________________________________
consensus CTTCAGTCTTGCAACAGTGCAGATGTTTGCATTACTATTGAGACCCAAGAAGGATCACAA
 
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rJMSF011E06+ GTACCGATTTTACTGGAATGTCTACCATTATGCAATTGGCTACTCAATACTTGTTCTAGG
rJMFF046E14+ GTACCGATTTTACTGGAATGTCTACCATTATGCAATTGGCTACTCAATACTTGTTCTAGG
                      ____________________________________________________________
consensus GTACCGATTTTACTGGAATGTCTACCATTATGCAATTGGCTACTCAATACTTGTTCTAGG
 
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rJMSF011E06+ CATCATCAACGTGTTCAAAGGTCTTGACATACTAAGCCCAGCAAAGAAGTGGAAATCTGC
rJMFF046E14+ CATCATCAACGTGTTCAAAGGTCTTGACATACTAAGCCCAGCAAAGAAGTGGAAATCTGC
                      ____________________________________________________________
consensus CATCATCAACGTGTTCAAAGGTCTTGACATACTAAGCCCAGCAAAGAAGTGGAAATCTGC
 
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rJMSF011E06+ ATACATAGTCGTGCTTGTAGTGCTAGGAGTGGTCGCGCTACTACTGGAAGTGGTCACCTG
rJMFF046E14+ ATACATAGTCGTGCTTGTAGTGCTAGGAGTGGTCGCGCTACTACTGGAAGTGGTCACCTG
                      ____________________________________________________________
consensus ATACATAGTCGTGCTTGTAGTGCTAGGAGTGGTCGCGCTACTACTGGAAGTGGTCACCTG
 
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rJMSF011E06+ GACTGTGGTGTTGAGGCGGAGATCAAGCAAATCCACCAAACCCTATGACGGGTTTGACAA
rJMFF046E14+ GACTGTGGTGTTGAGGCGGAGATCAAGCAAATCCACCAAACCCTATGACGGGTTTGACAA
                      ____________________________________________________________
consensus GACTGTGGTGTTGAGGCGGAGATCAAGCAAATCCACCAAACCCTATGACGGGTTTGACAA
 
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rJMSF011E06+ TGGACAAGGCAGTTAACCACCATTGCCCTCGTGATTTATCAGACTCTATTAGCTTGAGAG
rJMFF046E14+ TGGACAAGGCAGTTAACCACCATTGCCCTCGTGATTTATCAGACTCTATTAGCTTGAGAG
                      ____________________________________________________________
consensus TGGACAAGGCAGTTAACCACCATTGCCCTCGTGATTTATCAGACTCTATTAGCTTGAGAG
 
. : . : . : . : . : . :
rJMSF011E06+ GTTCTGTCTGTATATCATCTCCGACCATGAAGCTTCATTAGTGTGAATGCCATGGGGGAT
rJMFF046E14+ GTTCTGTCTGTATATCATCTCCGACCATGAAGCTTCATTAGTGTGAATGCCATGGGGGAT
                      ____________________________________________________________
consensus GTTCTGTCTGTATATCATCTCCGACCATGAAGCTTCATTAGTGTGAATGCCATGGGGGAT
 
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rJMSF011E06+ TTCTCTTGTTTAAGGTTTGCCAGCTTCTCCTTTGTATGTTGTATGCCTCACTTTATACTC
rJMFF046E14+ TTCTCTTGTTTAAGGTTTGCCAGCTTCTCCTTTGTATGTTGTATGCCTCACTTTATACTC
                      ____________________________________________________________
consensus TTCTCTTGTTTAAGGTTTGCCAGCTTCTCCTTTGTATGTTGTATGCCTCACTTTATACTC
 
. : . : . : . : . : . :
rJMSF011E06+ ACCAAATTAAAACTC
rJMFF046E14+ ACCAAATTAAAACTCACAATTCTATGTTATAATAGTTTATCGTTGCAGTTAAAAAAAAAG
                      ____________________________________________________________
consensus ACCAAATTAAAACTCACAATTCTATGTTATAATAGTTTATCGTTGCAGTTAAAAAAAAAG