| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031J18 | Sequence | 612 | 003380 (9) | ref|XP_009596357.1| | 5e-42 | PREDICTED: probable transcriptional regulator SLK2 [Nicotiana tomentosiformis] | 790 | 008350 (4) | ref|XP_009599034.1| | 5e-28 | PREDICTED: probable transcriptional regulator SLK2, partial [Nicotiana tomentos |
| JMFF045N13 | Sequence | 628 | 003380 (9) | ref|XP_009596357.1| | 3e-43 | PREDICTED: probable transcriptional regulator SLK2 [Nicotiana tomentosiformis] | 632 | 008350 (4) | ref|XP_009599034.1| | 1e-24 | PREDICTED: probable transcriptional regulator SLK2, partial [Nicotiana tomentos |
| JMSF021N24 | Sequence | 639 | 008350 (4) | ref|XP_009599034.1| | 1e-17 | PREDICTED: probable transcriptional regulator SLK2, partial [Nicotiana tomentos | |||||
| JMSF037B02 | Sequence | 681 | 003380 (9) | ref|XP_009596357.1| | 3e-61 | PREDICTED: probable transcriptional regulator SLK2 [Nicotiana tomentosiformis] | 760 | 008350 (4) | ref|XP_009599034.1| | 3e-27 | PREDICTED: probable transcriptional regulator SLK2, partial [Nicotiana tomentos |
This contig is upended
. : . : . : . : . : . :
rJMSF037B02+ GCAGGGAAATAGTATGCAGAACATAGCAGNGAGNGGNTACATGA
rJMFF031J18+ TGCAGGGAAATAGTATGCAGAACATAGCAGTGAGTGGCTACATGA
____________________________________________________________
consensus TGCAGGGAAATAGTATGCAGAACATAGCAGTGAGTGGCTACATGA
. : . : . : . : . : . :
rJMSF037B02+ CTGCCAATGTACAACAACCACAGCAGCGTTTACTGAACAGTAGTAATGTGTCACTCCCTC
rJMFF031J18+ CTGCCAATGTACAACAACCACAGCAGCGTTTACTGAACAGTAGTAATGTGTCACTCCCTC
____________________________________________________________
consensus CTGCCAATGTACAACAACCACAGCAGCGTTTACTGAACAGTAGTAATGTGTCACTCCCTC
. : . : . : . : . : . :
rJMSF037B02+ AAAATCATCAACAGCCCACGAACCAGGTTGTACAACAGCAAATCCTCCAGCAATTGCTGC
rJMSF021N24+ CAGGTTGTACAACAGCAAATCCTCCAGCAATTGNTGC
rJMFF031J18+ AAAATCATCAACAGCCCACGAACCAGGTTGTACAACAGCAAATCCTCCAGCAATTGCTGC
____________________________________________________________
consensus AAAATCATCAACAGCCCACGAACCAGGTTGTACAACAGCAAATCCTCCAGCAATTGCTGC
. : . : . : . : . : . :
rJMSF037B02+ AGGATATTAACACCAGTAACAGTGGAGGAGGTGTTGTTCAGCAACAGTCATTCAGCAGTC
rJMSF021N24+ AGGATANTAACACCAGTAACAGTGGAGGAGGTGTTGNTCAGCAACAGTCATTCAGCAGTC
rJMFF031J18+ AGGATATTAACACCAGTAACAGTGGAGGAGGTGTTGTTCGGCAACAGTCATTCAGCAGTC
rJMFF045N13+ AGGTGTTGTTCAGCAACAGTCATTCAGCAGTC
____________________________________________________________
consensus AGGATATTAACACCAGTAACAGTGGAGGAGGTGTTGTTCAGCAACAGTCATTCAGCAGTC
. : . : . : . : . : . :
rJMSF037B02+ ATGCAGCCGGTGGAGGTGTTTCAAGGGAGGGGATCGCCTTTGGAAACAACGCTTCACCAG
rJMSF021N24+ ANGCAGCCGGTGGAGGTGTTTCAAGGGAGGGGATCGCCTTTGGANACAACGCTTCNCCAG
rJMFF031J18+ ATGCAGCCGGTGGAGGTGTTTCAAGGGAGGGGATCGCCTTTGGAAACAACGCTTCACCAG
rJMFF045N13+ ATGCAGCCGGTGGAGGTGTTTCAAGGGAGGGGATCGCCTTTGGAAACAACGCTTCACCAG
____________________________________________________________
consensus ATGCAGCCGGTGGAGGTGTTTCAAGGGAGGGGATCGCCTTTGGAAACAACGCTTCACCAG
. : . : . : . : . : . :
rJMSF037B02+ CAGCTCCAAACGGGCCTGGAAACGCGGTCGGACCCACGCCATCCAGGAACAACAGTTTCA
rJMSF021N24+ CAGCTCCAAACGGGCCTGGAAACGCGGTCGGACNCACGCCATCCAGGAACANCAGTTTCA
rJMFF031J18+ CAGCTCCAAACGGGCCTGGAAACGCGGTCGGACCCACGCCATCCAGGAACAACAGTTTCA
rJMFF045N13+ CAGCTCCAAACGGGCCTGGAAACGCGGTCGGACCCACGCCATCCAGGAACAACAGTTTCA
____________________________________________________________
consensus CAGCTCCAAACGGGCCTGGAAACGCGGTCGGACCCACGCCATCCAGGAACAACAGTTTCA
. : . : . : . : . : . :
rJMSF037B02+ AAGCGGCTTCTAACAGCGAGTCATCAATTGGTGGTGCCAGTAACGGGTTCCCTCACAAAG
rJMSF021N24+ AAGCGGCTTNNAACAGCGAGTCATCAATTGGTGGTGCCAGTANCGGGTTCCCTCACAAAG
rJMFF031J18+ AAGCGGCTTCTAACAGCGAGTCATCAATTGGTGGTGCCAGTAACGGGTTCCCTCACAAAG
rJMFF045N13+ AAGCGGCTTCTAACAGCGAGTCATCAATTGGTGGTGCCAGTAACGGGTTCCCTCACAAAG
____________________________________________________________
consensus AAGCGGCTTCTAACAGCGAGTCATCAATTGGTGGTGCCAGTAACGGGTTCCCTCACAAAG
. : . : . : . : . : . :
rJMSF037B02+ CACAGGACTTGCCGCACAATCTTCACATATCAGAGGAAATGTTACCTGATATATCTCAAG
rJMSF021N24+ CACAGGACTTGCCGCACAATCTTCACATATCAGAGGAAATGTTACNTGANATATNTCAAG
rJMFF031J18+ CACAGGACTTGCCGCACAATCTTCACATATCAGAGGAAATGTTACCTGATATATCTCAAG
rJMFF045N13+ CACAGGACTTGCCGCACAATCTTCACATATCAGAGGAAATGTTACCTGATATATCTCAAG
____________________________________________________________
consensus CACAGGACTTGCCGCACAATCTTCACATATCAGAGGAAATGTTACCTGATATATCTCAAG
. : . : . : . : . : . :
rJMSF037B02+ ATTTCACAGATAGTGGTTTTTTCAACAGTGATCTTGACAATAATATGAACTATGGGTGGA
rJMSF021N24+ ATTTCNCAGATAGTGGTTTTTTCAACAGTGATCTTGACAATAATATGANCTATGGGTGGA
rJMFF031J18+ ATTTCACAGATAGTGGTTTTTTCAACAGTGATCTTGACAATAATATGAACTATGGGTGGA
rJMFF045N13+ ATTTCACAGATAGTGGTTTTTTCAACAGTGATCTTGACAATAATATGAACTATGGGTGGA
____________________________________________________________
consensus ATTTCACAGATAGTGGTTTTTTCAACAGTGATCTTGACAATAATATGAACTATGGGTGGA
. : . : . : . : . : . :
rJMSF037B02+ AAGCATGACTAACATGGCCTCTTGTTAGATGAGTACTTTGCCATATATATTTGTACAGGT
rJMSF021N24+ AAGCATGANTAACATGGCCTCTTGTTAGATGAGTACTTTGCCATATATATTTGNACAGGT
rJMFF031J18+ AAGCATGACTAACATGGCCTCTTGTTAGATGAGTACTTTGCCATATATATTTGTACAGGT
rJMFF045N13+ AAGCATGACTAACATGGCCTCTTGTTAGATGAGTACTTTGCCATATATATTTGTACAGGT
____________________________________________________________
consensus AAGCATGACTAACATGGCCTCTTGTTAGATGAGTACTTTGCCATATATATTTGTACAGGT
. : . : . : . : . : . :
rJMSF037B02+ TGCTTAAAATACATTCCCCCCTTCTTATCTCGGGTGTTCCCATTTAGCCCTTTGTGCTGT
rJMSF021N24+ TGNNTAAAATACATTCCCCCCNTCTTATNTNGGGTGTTCCCANTNAGCCCTNTNTGCTGC
rJMFF031J18+ TGCTTAAAATACATTCCCCCCTTCTTATCTCGGGTGTTCCCATTTAGCCCTTTGTGCTGT
rJMFF045N13+ TGCTTAAAATACATTCCCCCCTTCTTATCTCGGGTGTTCCCATTTAGCCCTTTGTGCTGT
____________________________________________________________
consensus TGCTTAAAATACATTCCCCCCTTCTTATCTCGGGTGTTCCCATTTAGCCCTTTGTGCTGT
. : . : . : . : . : . :
rJMSF037B02+ TGAGTAGCTGTACTCTGTTAGGTGTGATCTTTATGCACTTTTTGCCTTCACTTTGTGACT
rJMSF021N24+ TGAGTAGCTGTACTCTGTTAGGTGTGATCNTTATGCACTTTTTGCCTTCACTTTGTGACT
rJMFF031J18+ TGAGTAGCTGTACTCTGTTAGGTGTGATCTTTATGCACTTTTTGCCTTCACTTTGTGACT
rJMFF045N13+ TGAGTAGCTGTACTCTGTTAGGTGTGATCTTTATGCACTTTTTGCCTTCACTTTGTGACT
____________________________________________________________
consensus TGAGTAGCTGTACTCTGTTAGGTGTGATCTTTATGCACTTTTTGCCTTCACTTTGTGACT
. : . : . : . : . : . :
rJMSF037B02+ TTACCTTTAAAAGTCCCCTTGCAAGTGTAATCAATGGATATGAACTCCCAAACTCT
rJMSF021N24+ TTACCTTTAAAAGTCCCCTTGCAAGTGTAATCAATGGATATGAACTCCCAAACTCT
rJMFF031J18+ TTACCTTTAAAAGTCCCCTTGCAAGTGTAATCAATGGATATGAACTCCCAAACTCTTCTT
rJMFF045N13+ TTACCTTTAAAAGTCCCCTTGCAAGTGTAATCAATGGATATGAACTCCCAAACTCTTCTT
____________________________________________________________
consensus TTACCTTTAAAAGTCCCCTTGCAAGTGTAATCAATGGATATGAACTCCCAAACTCTTCTT
. : . : . : . : . : . :
rJMFF031J18+ TAATCTTTAATTNGGTAT
rJMFF045N13+ TAATCTTTAATTTGGTATTAACAGAGATTGTCCAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TAATCTTTAATTTGGTATTAACAGAGATTGTCCAAAAAAAAAAAAAAAACTCTCCAGGGT