Contig 008349:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF025G09+                                                  GCCAAACGAAGATGTAGCAT
rJMSF020J05+                                                           AGATGTAGCAT
                      ____________________________________________________________
consensus                                                     GCCAAACGAAGATGTAGCAT
 
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rJMSF025G09+          NATCGCGGACATGATTGATTGCTTAGCTTTGAAACTCGTACCAAGTTGGAAATCTTCATG
rJMSF020J05+          NATCGCGGACATGATTGATTGCTTAGCTTTGAAACTCGTACCAAGTTGGAAATCTTCATG
                      ____________________________________________________________
consensus             NATCGCGGACATGATTGATTGCTTAGCTTTGAAACTCGTACCAAGTTGGAAATCTTCATG
 
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rJMSF025G09+          TGGAAGCTTAGGTGCGGGCAAATGTCCATATGACAACTCAATTGCTGTTGCAAGTACTTC
rJMSF020J05+          TGGAAGCTTAGGTGCGGGCAAATGTCCATATGACAACTCAATTGCTGTTGCAAGTACTTC
                      ____________________________________________________________
consensus             TGGAAGCTTAGGTGCGGGCAAATGTCCATATGACAACTCAATTGCTGTTGCAAGTACTTC
 
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rJMSF025G09+          CAAAAACCATGAATCAAATTGGGTTTTTGGCCAAGGATCTGTGGAGCAGCATATCTTTTC
rJMSF020J05+          CAAAAACCATGAATCAAATTGGGTTTTTGGCCAAGGATCTGTGGAGCAGCATATCTTTTC
                      ____________________________________________________________
consensus             CAAAAACCATGAATCAAATTGGGTTTTTGGCCAAGGATCTGTGGAGCAGCATATCTTTTC
 
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rJMSF025G09+          TCATGCATCAGGAGGGAAGAACAATACTGAGGAAGTAGACAAGGTGAATATATCTTCAGA
rJMSF020J05+          TCATGCATCAGGAGGGAAGAACAATACTGAGGAAGTAGACAAGGTGAATATATCTTCAGA
rJMFF045N03+           CATGCATCAGGAGGGAAGAACAATACTGAGGAAGTAGACAAGGTGAATATATCTTCAGA
                      ____________________________________________________________
consensus             TCATGCATCAGGAGGGAAGAACAATACTGAGGAAGTAGACAAGGTGAATATATCTTCAGA
 
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rJMSF025G09+          ACATGGAATGTCAGCCTCTCTAGATAAGCACAAGAAGCCCCTAGGCAAAGTCTATGATGA
rJMSF020J05+          ACATGGAATGTCAGCCTCTCTAGATAAGCACAAGAAGCCCCTAGGCAAAGTCTATGATGA
rJMFF045N03+          ACATGGAATGTCAGCCTCTCTAGATAAGCACAAGAAGCCCCTAGGCAAAGTCTATGATGA
                      ____________________________________________________________
consensus             ACATGGAATGTCAGCCTCTCTAGATAAGCACAAGAAGCCCCTAGGCAAAGTCTATGATGA
 
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rJMSF025G09+          AACTAAGGGTTTCAAAAATGGTGGCCTTAGCTATGATGGATACCCTTCTGAATTTATGAT
rJMSF020J05+          AACTAAGGGTTTCAAAAATGGTGGCCTTAGCTATGATGGATACCCTTCTGAATTTATGAT
rJMFF045N03+          AACTAAGGGTTTCAAAAATGGTGGCCTTAGCTATGATGGATACCCTTCTGAATTTATGAT
                      ____________________________________________________________
consensus             AACTAAGGGTTTCAAAAATGGTGGCCTTAGCTATGATGGATACCCTTCTGAATTTATGAT
 
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rJMSF025G09+          GAGTGAGTGCACAAGGGATTCGGGGATCTCCTCAGCTGGTTCATTCACTACCATGTCCAA
rJMSF020J05+          GAGTGAGTGCACAAGGGATTCGGGGATCTCCTCAGCTGGTTCATTCACTACCATGTCCAA
rJMFF045N03+          GAGTGAGTGCACAAGGGATTCGGGGATCTCCTCAGCTGGTTCATTCACTACCATGTCCAA
                      ____________________________________________________________
consensus             GAGTGAGTGCACAAGGGATTCGGGGATCTCCTCAGCTGGTTCATTCACTACCATGTCCAA
 
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rJMSF025G09+          TGATATGAACATATGCATTTCTTCTCTCTCCATAACAGACAAGGATAATGATAAAGATCA
rJMSF020J05+          TGATATGAACATATGCATTTCTTCTCTCTCCATAACAGACAAGGATAATGATAAAGATCA
rJMFF045N03+          TGATATGAACATATGCATTTCTTCTCTCTCCATAACAGACAAGGATAATGATAAAGATCA
                      ____________________________________________________________
consensus             TGATATGAACATATGCATTTCTTCTCTCTCCATAACAGACAAGGATAATGATAAAGATCA
 
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rJMSF025G09+          TTATCTTGATCTCAATCAGGAAATCGATGCCATTGATATGCAGTATGAGCAATGCTGTCG
rJMSF020J05+          TTATCTTGATCTCAATCAGGAAATCGATGCCATTGATATGCAGTATGAGCAATGCTGTCG
rJMFF045N03+          TTATCTTGATCTCAATCAGGAAATCGATGCCATTGATATGCAGTATGAGCAATGCTGTCG
                      ____________________________________________________________
consensus             TTATCTTGATCTCAATCAGGAAATCGATGCCATTGATATGCAGTATGAGCAATGCTGTCG
 
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rJMSF025G09+          AGAACTTGTGAGGATGAGGGAGGAGGCAATTGAGAATGCTAAAAAGAAATGGATTACCAA
rJMSF020J05+          AGAACTTGTGAGGATGAGGGAGGAGGCAATTGAGAATGCT-AAAAGAAATGGATTACCAA
rJMFF045N03+          AGAACTTGTGAGGATGAGGGAGGAGGCAATTGAGAATGCTAAAAAGAAATGGATTACCAA
                      ____________________________________________________________
consensus             AGAACTTGTGAGGATGAGGGAGGAGGCAATTGAGAATGCTAAAAAGAAATGGATTACCAA
 
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rJMSF025G09+          AAAGATGTGTCCTTTGACTATGCAGATTCCTTCATGCTACTATTTGTCTAATTAGTGCAA
rJMSF020J05+          AAAGATGTGTCCTTTGACTATGCAGATTCCTTCATGCTACTATTTGTCTAATTAGTGCAA
rJMFF045N03+          AAAGATGTGTCCTTTGACTATGCAGATTCCTTCATGCTACTATTTGTCTAATTAGTGCAA
                      ____________________________________________________________
consensus             AAAGATGTGTCCTTTGACTATGCAGATTCCTTCATGCTACTATTTGTCTAATTAGTGCAA
 
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rJMSF025G09+          CTACTTGTGTGTGGATATTTTTCTATAGAAACTGCTCTGTTATTTAGACCAAATTTGATT
rJMSF020J05+          CTACTTGTGTGTGGATATTTTTCTATAGAAACTGCTCTGTTATTTAGACCAAATTTGATT
rJMFF045N03+          CTACTTGTGTGTGGATATTTTTCTATAGAAACTGCTCTGTTATTTAGACCAAATATGATT
                      ____________________________________________________________
consensus             CTACTTGTGTGTGGATATTTTTCTATAGAAACTGCTCTGTTATTTAGACCAAATTTGATT
 
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rJMSF025G09+          CATATACTAC                                                  
rJMSF020J05+          CATATACTACATTGTGTATT                                        
rJMFF045N03+          CATATACTACATTGTGTATTTGGACCAAATCTGATTCATATACATACTACATTATGTGAC
                      ____________________________________________________________
consensus             CATATACTACATTGTGTATTTGGACCAAATCTGATTCATATACATACTACATTATGTGAC