Contig 008340:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF045C03-                                                 CGAGAACCGATTCGTCCCCGGT
JMSF045I02-                                                              GTCCCCGGT
                      ____________________________________________________________
consensus                                                   CGAGAACCGATTCGTCCCCGGT
 
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JMFF045C03-           GACTTCTTCTCTGCACCATCCGGAGCAAATTCGCAAGTCTCGCACGCATCTTCCACTTCA
JMSF045I02-           GACTTCTTCTCTGCACCATCCGGAGCAAATTCGCAAGTCTCGCACGCATCTTCCACTTCA
                      ____________________________________________________________
consensus             GACTTCTTCTCTGCACCATCCGGAGCAAATTCGCAAGTCTCGCACGCATCTTCCACTTCA
 
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JMFF045C03-           CCACGAACCAATCGCCGTTTCTGCAAATCTCAGGGGGTGCTTAATTGATTCTTGTCTTGG
JMSF045I02-           CCACGAACCAATCGCCGTTTCTGCAAATCTCAGGGGGTGCTTAATTGATTCTTGTCTTGG
                      ____________________________________________________________
consensus             CCACGAACCAATCGCCGTTTCTGCAAATCTCAGGGGGTGCTTAATTGATTCTTGTCTTGG
 
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JMFF045C03-           ATTTGACATTGGATTTATTATAGAGAGATGAACCCAAAAGGCTTGATTTATAGCTTTGTT
JMSF045I02-           ATTTGACATTGGATTTATTATAGAGAGATGAACCCAAAAGGCTTGATTTATAGCTTTGTT
                      ____________________________________________________________
consensus             ATTTGACATTGGATTTATTATAGAGAGATGAACCCAAAAGGCTTGATTTATAGCTTTGTT
 
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JMFF045C03-           GCAAAAGGCACTGTTGTTCTAGCGGAGTACACGCCTTATTCTGGGAACTTCAGCACCATT
JMSF045I02-           GCAAAAGGCACTGTTGTTCTAGCGGAGTACACGCCTTATTCTGGGAACTTCAGCACCATT
rJMSF045I02+                                                           TCAGCACCATT
                      ____________________________________________________________
consensus             GCAAAAGGCACTGTTGTTCTAGCGGAGTACACGCCTTATTCTGGGAACTTCAGCACCATT
 
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JMFF045C03-           GCTGTTCAGTGTTTGCAGAAGCTGCCTTCTAGTAGCAGCAAGTATACCTACTCATGTGAT
JMSF045I02-           GCTGTTCAGTGTTTGCAGAAGCTGCCTTCTAGTAGCAGCAAGTATACCTACTCATGTGAT
rJMSF045I02+          GCTGTTCAGTGTTTGCAGAAGCTGCCTTCTAGTAGCAGCAAGTATACCTACTCATGTGAT
                      ____________________________________________________________
consensus             GCTGTTCAGTGTTTGCAGAAGCTGCCTTCTAGTAGCAGCAAGTATACCTACTCATGTGAT
 
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JMFF045C03-           GGGCATACTTTCAACTTCCTCCTTGACAGTGGTTTTGTCTTTCTTGTTGTTGCTGATGAA
JMSF045I02-           GGGCATACTTTCAACTTCCTCCTTGACAGTGGTTTTGTCTTTCTTGTTGTTGCTGATGAA
rJMSF045I02+          GGGCATACTTTCAACTTCCTCCTTGACAGTGGTTTTGTCTTTCTTGTTGTTGCTGATGAA
                      ____________________________________________________________
consensus             GGGCATACTTTCAACTTCCTCCTTGACAGTGGTTTTGTCTTTCTTGTTGTTGCTGATGAA
 
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JMFF045C03-           TCAACGGGAAGAAATGTACCTTTTGTTTTCCTTGAGAAAGTGAAGGATGACTTCAAACAG
JMSF045I02-           TCAACGGGAAGAAATGTACCTTTTGTTTTCCTTGAGAAAGTGAAGGATGACTTCAAACAG
rJMSF045I02+          TCAACGGGAAGAAATGTACCTTTTGTTTTCCTTGAGAAAGTGAAGGATGACTTCAAACAG
                      ____________________________________________________________
consensus             TCAACGGGAAGAAATGTACCTTTTGTTTTCCTTGAGAAAGTGAAGGATGACTTCAAACAG
 
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JMFF045C03-           CGTTATGGTGCTAGTATAAAAAGTGATGGTCCACACCCTCTTGCTGATGATGATGATGAA
JMSF045I02-           CGTTATGGTGCTAGTATAAAAAGTGATGGTCCACACCCTCTTGCTGATGATGATGATGAA
rJMSF045I02+          CGTTATGGTGCTAGTATAAAAAGTGATGGTCCACACCCTCTTGCTGATGATGATGATGAA
                      ____________________________________________________________
consensus             CGTTATGGTGCTAGTATAAAAAGTGATGGTCCACACCCTCTTGCTGATGATGATGATGAA
 
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JMFF045C03-           GATGATGATCTATTTGAGGACCGGCTTTAGCCTTGCATACAATCTTGACCGACAATTTGG
JMSF045I02-           GATGATGATCTATTTGAGGACCGG-TTTAGCATTGCATACAATCTTGACCGAGAATTTGG
rJMSF045I02+          GATGATGATCTATTTGAGGACCGG-TTTAGCATTGCATACAATCTTGACCGAGAATTTGG
                      ____________________________________________________________
consensus             GATGATGATCTATTTGAGGACCGG-TTTAGCATTGCATACAATCTTGACCGAGAATTTGG
 
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JMFF045C03-           GCCAAGGCTCAAAGAGCACATGCAGTATTGCATGA                         
JMSF045I02-           GCCAAGGCTCAAAGAGCACATGCAGTATTGCATGAACCATCCAGATGAAATCAGCAAGCT
rJMSF045I02+          GCCAAGGCTCAAAGAGCACATGCAGTATTGCATGAACCATCCAGATGAAATCAGCAAGCT
                      ____________________________________________________________
consensus             GCCAAGGCTCAAAGAGCACATGCAGTATTGCATGAACCATCCAGATGAAATCAGCAAGCT
 
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JMSF045I02-           GTCTAAATTGAAGGCTCAAATAACAGAGGTTAAAGGAATAATGATGGACAACATTGAGAA
rJMSF045I02+          GTCTAAATTGAAGGCTCAAATAACAGAGGTTAAAGGAATAATGATGGACAACATTGAGAA
                      ____________________________________________________________
consensus             GTCTAAATTGAAGGCTCAAATAACAGAGGTTAAAGGAATAATGATGGACAACATTGAGAA
 
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JMSF045I02-           GGTTTTGGATAGGGGCGAGAGGATTGAATTGCTAGTTGATAAAACAGAAAA         
rJMSF045I02+          GGTTTTGGATAGGGGCGAGAGGATTGAATTGCTAGTTGATAAAACAGAAAACCTTCAGTT
rJMFF045C03+                                          TAGTTGATAAAACAGAAAACCTTCAGTT
                      ____________________________________________________________
consensus             GGTTTTGGATAGGGGCGAGAGGATTGAATTGCTAGTTGATAAAACAGAAAACCTTCAGTT
 
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rJMSF045I02+          TCAGGCTGACAGCTTTCAGAGGCAGGGGAGGCAACTACGCCGGAAGATGTGGCTGCAGAA
rJMFF045C03+          TCAGGCTGACAGCTTTCAGAGGCAGGGGAGGCAACTACGCCGGAAGATGTGGCTGCAGAA
                      ____________________________________________________________
consensus             TCAGGCTGACAGCTTTCAGAGGCAGGGGAGGCAACTACGCCGGAAGATGTGGCTGCAGAA
 
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rJMSF045I02+          CCTTCAGATGAAGTTGATGGTTGGAGGAGGTGTCATTGCTGTAATTATGATCATCTGGCT
rJMFF045C03+          CCTTCAGATGAAGTTGATGGTTGGAGGAGGTGTCATTGCTGTAATTATGATCATCTGGCT
                      ____________________________________________________________
consensus             CCTTCAGATGAAGTTGATGGTTGGAGGAGGTGTCATTGCTGTAATTATGATCATCTGGCT
 
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rJMSF045I02+          CATTGCTTGTGGAGGTTTCAAATGTTGAGGGTTTTAAACGGTGCGGTCTGGTATTTAGTA
rJMFF045C03+          CATTGCTTGTGGAGGTTTCAAATGTTGAGGGTTTTAAACGGTGCGGTCTGGTATTTAGTA
                      ____________________________________________________________
consensus             CATTGCTTGTGGAGGTTTCAAATGTTGAGGGTTTTAAACGGTGCGGTCTGGTATTTAGTA
 
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rJMSF045I02+          TTCTACGAATTTGCTGGTCCTTTTTTGGCCTTTATTTCTTTTGATGTACAAAAACCATTA
rJMFF045C03+          TTTTACGAATTTGCTGGTCCTTTTTTGGCCTTTATTTCTTTTGATGTACAAAAACCATTA
                      ____________________________________________________________
consensus             TTTTACGAATTTGCTGGTCCTTTTTTGGCCTTTATTTCTTTTGATGTACAAAAACCATTA
 
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rJMSF045I02+          GC                                                          
rJMFF045C03+          GCCCATTCTTGTATATGCTCTATACTTTAACTGGAACCTTGCGCCCAACTTCTTGCAAAC
                      ____________________________________________________________
consensus             GCCCATTCTTGTATATGCTCTATACTTTAACTGGAACCTTGCGCCCAACTTCTTGCAAAC
 
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rJMFF045C03+          CCTGTTATTTCCCCTTGTAGTATTTTCTGCTCGCGTTCTTTATCTTTTATGGGGCATGAA
                      ____________________________________________________________
consensus             CCTGTTATTTCCCCTTGTAGTATTTTCTGCTCGCGTTCTTTATCTTTTATGGGGCATGAA
 
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rJMFF045C03+          AACCCTGATAGCTATTGGATATTACTTCAACCAGTAAGTTAGACTGAAATGGCAGTGGTT
                      ____________________________________________________________
consensus             AACCCTGATAGCTATTGGATATTACTTCAACCAGTAAGTTAGACTGAAATGGCAGTGGTT