Contig 008326:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP020B07Sequence195008326 (6)
JMFF004P22Sequence199006439 (6)682008326 (6)emb|CBI16416.3|2e-44unnamed protein product [Vitis vinifera]
JMFF029E07Sequence419006439 (6)741008326 (6)ref|XP_009618593.1|1e-46PREDICTED: transcription factor bHLH122-like [Nicotiana tomentosiformis] ref|XP_
JMFF043M23Sequence645006439 (6)511008326 (6)emb|CBI16416.3|8e-40unnamed protein product [Vitis vinifera]
JMSF029P04Sequence482006439 (6)678008326 (6)ref|XP_009618593.1|7e-47PREDICTED: transcription factor bHLH122-like [Nicotiana tomentosiformis] ref|XP_
JMSF044M02Sequence444006439 (6)701008326 (6)ref|XP_009618593.1|8e-47PREDICTED: transcription factor bHLH122-like [Nicotiana tomentosiformis] ref|XP_

Alignment

This contig is upended


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rJMCP020B07+                                                              TGTTCGGG
rJMSF044M02+                                                              TGTTCGGG
                      ____________________________________________________________
consensus                                                                 TGTTCGGG
 
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rJMCP020B07+          GctaccgGTCGGGGGCTTCAATGAAGATCAGACAATGGATGAAAGTTACTTGTCAAGTTT
rJMSF044M02+          GGATGGCGTCGGGGGCTTCAATGAAGATCAGACAATGGATGAAAGTTACTTGTCAAGTTT
rJMSF029P04+                          TTCAATGAAGATCAGACAATGGATGAAAGTTACTTGTCAAGTTT
rJMFF029E07+                          TTCAATGAAGATCAGACAATGGATGAAAGTTACTTGTCAAGTTT
                      ____________________________________________________________
consensus             GGATGGCGTCGGGGGCTTCAATGAAGATCAGACAATGGATGAAAGTTACTTGTCAAGTTT
 
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rJMCP020B07+          CCCTATACCTTCTTGGGATGATTTAGATCTCTTGTCTGATGACCTCCTTAAAGTAACAGA
rJMSF044M02+          CCCTATACCTTCTTGGGATGATTTAGATCTCTTGTCTGATGACTTCCTTAAAGTAACAGA
rJMFF004P22+                    TCTTGGGATGATTTAGATCTCTTGTCTGATGACTTCCTTAAAGTAACAGA
rJMSF029P04+          CCCTATACCTTCTTGGGATGATTTAGATCTCTTGTCTGATGACTTCCTTAAAGTAACAGA
rJMFF029E07+          CCCTATACCTTCTTGGGATGATTTAGATCTCTTGTCTGATGACTTCCTTAAAGTAACAGA
                      ____________________________________________________________
consensus             CCCTATACCTTCTTGGGATGATTTAGATCTCTTGTCTGATGACTTCCTTAAAGTAACAGA
 
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rJMCP020B07+          TGAAAAGCCAAGTTTGAAAGCAAAAGCACCAGATTTTAAGAACACAGAAGGTAGTCGAAG
rJMSF044M02+          TGAAAAGCCAAGTTTGAAAGCAAAAGCACCAGATTTTAAGAACACAGAAGGTAGTCGAAG
rJMFF004P22+          TGAAAAGCCAAGTTTGAAAGCAAAAGCACCAGATTTTAAGAACACAGAAGGTAGTCGAAG
rJMSF029P04+          TGAAAAGCCAAGTTTGAAAGCAAAAGCACCAGATTTTAAGAACACAGAAGGTAGTCGAAG
rJMFF029E07+          TGAAAAGCCAAGTTTGAAAGCAAAAGCACCAGATTTTAAGAACACAGAAGGTAGTCGAAG
                      ____________________________________________________________
consensus             TGAAAAGCCAAGTTTGAAAGCAAAAGCACCAGATTTTAAGAACACAGAAGGTAGTCGAAG
 
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rJMCP020B07+          TCGCCCT                                                     
rJMSF044M02+          TCGCCCTCCCGGCCGTTTATCTCATCACCTCAGTTTACCCAAAAGCTCCGAGGAGTTATC
rJMFF004P22+          TCGCCCTCCCGGCCGTTTATCTCATCACCTCAGTTTACCCAAAAGCTCCGAGGAGTTATC
rJMSF029P04+          TCGCCCTCCCGGCCGTTTATCTCATCACCTCAGTTTACCCAAAAGCTCCGAGGAGTTATC
rJMFF029E07+          TCGCCCTCCCGGCCGTTTATCTCATCACCTCAGTTTACCCAAAAGCTCCGAGGAGCTATC
                      ____________________________________________________________
consensus             TCGCCCTCCCGGCCGTTTATCTCATCACCTCAGTTTACCCAAAAGCTCCGAGGAGTTATC
 
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rJMSF044M02+          GTCCATATTGCAGGATTCTGTGCCTTGCAGGGTCCGGGCAAAGAGAGGTTGCGCTACTCA
rJMFF004P22+          GTCCATATTGCAGGATTCTGTGCCTTGCAGGGTCCGGGCAAAGAGAGGTTGCGCTACTCA
rJMSF029P04+          GTCCATATTGCAGGATTCTGTGCCTTGCAGGGTCCGGGCAAAGAGAGGTTGCGCTACTCA
rJMFF029E07+          GTCCATATTGCAGGATTCTGTGCCTTGCAGGGTCCGGGCAAAGAGAGGTTGCGCTACTCA
rJMFF043M23+                                       GGGTCCGGGCAAAGAGAGGTTGCGCTACTCA
                      ____________________________________________________________
consensus             GTCCATATTGCAGGATTCTGTGCCTTGCAGGGTCCGGGCAAAGAGAGGTTGCGCTACTCA
 
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rJMSF044M02+          CCCTCGCAGCATTGCCGAGAGGGTTAGAAGAACTCGAATAAGCGACAGAATGAGGAAGCT
rJMFF004P22+          CCCTCGCAGCATTGCCGAGAGGGTTAGAAGAACTCGAATAAGCGACAGAATGAGGAAGCT
rJMSF029P04+          CCCTCGCAGCATTGCCGAGAGGGTTAGAAGAACTCGAATAAGCGACAGAATGAGGAAGCT
rJMFF029E07+          CCCTCGCAGCATTGCCGAGAGGGTTAGAAGAACTCGAATAAGCGACAGAATGAGGAAGCT
rJMFF043M23+          CCCTCGCAGCATTGCCGAGAGGGTTAGAAGAACTCGAATAAGCGACAGAATGAGGAAGCT
                      ____________________________________________________________
consensus             CCCTCGCAGCATTGCCGAGAGGGTTAGAAGAACTCGAATAAGCGACAGAATGAGGAAGCT
 
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rJMSF044M02+          GCAAGAGCTCGTCCCGAACATGGACAAGCAAACAAACACAGCAGATATGTTGGACCTGGC
rJMFF004P22+          GCAAGAGCTCGTCCCGAACATGGACAAGCAAACAAACACAGCAGATATGTTGGACCTGGC
rJMSF029P04+          GCAAGAGCTCGTCCCGAACATGGACAAGCAAACAAACACAGCAGATATGTTGGACCTGGC
rJMFF029E07+          GCAAGAGCTCGTCCCGAACATGGACAAGCAAACAAACACAGCAGATATGTTGGACCTGGC
rJMFF043M23+          GCAAGAGCTCGTCCCGAACATGGACAAGCAAACAAACACAGCAGATATGTTGGACCTGGC
                      ____________________________________________________________
consensus             GCAAGAGCTCGTCCCGAACATGGACAAGCAAACAAACACAGCAGATATGTTGGACCTGGC
 
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rJMSF044M02+          AGTGGATTACATTAAAGATCTAGAGCAGAAAGTGAAGAGGTTAGCTGATAATCGTGCCAA
rJMFF004P22+          AGTGGATTACATTAAAGATCTAGAGCAGAAAGTGAAGAGGTTAGCTGATAATCGTGCCAA
rJMSF029P04+          AGTGGATTACATTAAAGATCTAGAGCAGAAAGTGAAGAGGTTAGCTGATAATCGTGCCAA
rJMFF029E07+          AGTGGATTACATTAAAGATCTAGAGCAGAAAGTGAAGAGGTTAGCTGATAATCGTGCCAA
rJMFF043M23+          AGTGGATTACATTAAAGATCTAGAGCAGAAAGTGAAGAGGTTAGCTGATAATCGTGCCAA
                      ____________________________________________________________
consensus             AGTGGATTACATTAAAGATCTAGAGCAGAAAGTGAAGAGGTTAGCTGATAATCGTGCCAA
 
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rJMSF044M02+          GTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAGT
rJMFF004P22+          GTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAGT
rJMSF029P04+          GTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAGT
rJMFF029E07+          GTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAGT
rJMFF043M23+          GTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAGT
                      ____________________________________________________________
consensus             GTGTAGATGCTCGAATAAGTAGTAGGGCAGGGATGTACCGATGAATGTAACGTGGAAAGT
 
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rJMSF044M02+          TGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAAT
rJMFF004P22+          TGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAAT
rJMSF029P04+          TGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAAT
rJMFF029E07+          TGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAAT
rJMFF043M23+          TGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAAT
                      ____________________________________________________________
consensus             TGATGAACATTGTGGGATTCCTCCTGGCACTAAATTAATCACAGATCAAAAGAAGAAAAT
 
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rJMSF044M02+          GGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAACA
rJMFF004P22+          GGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAACA
rJMSF029P04+          GGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAACA
rJMFF029E07+          GGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAACA
rJMFF043M23+          GGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAACA
                      ____________________________________________________________
consensus             GGGATGGGAGTGCCACAAAAACAATTTCATTTGATGTAACATATGAAGCGCTGTTGAACA
 
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rJMSF044M02+          TAAAAGCATTAATGTTTGTGTTGGGTGTACCCC                           
rJMFF004P22+          TAAAAGCATTAATGTTTGTGTTGGGTGTACCCCTCTTTTTGTCCATAAATAATGAAAAGA
rJMSF029P04+          TAAAAGCATTAATGTTTGTGTTGGGTGTACCCCT                          
rJMFF029E07+          TAAAAGCATTAATGTTTGTGTTGGGTGTACCCCTCTTTTTGTCCATAAATAATGAAAAGA
rJMFF043M23+          TAAAAGCATTAATGTTTGTGTTGGGTGTACCCCTCTTTTTGTCCATAAATAATGAAAAGA
                      ____________________________________________________________
consensus             TAAAAGCATTAATGTTTGTGTTGGGTGTACCCCTCTTTTTGTCCATAAATAATGAAAAGA
 
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rJMFF004P22+          ATTTGGTAGGCTCGAGTGTCCTTTACACGCTA                            
rJMFF029E07+          ATTTGGTAGGCTCGAGTGTCCTTTACACGCTA                            
rJMFF043M23+          ATTTGGTAGGCTCGAGTGTCCTTTACACGCTATTTTTTATTAAAACGTTGTTTGCTGCTT
                      ____________________________________________________________
consensus             ATTTGGTAGGCTCGAGTGTCCTTTACACGCTATTTTTTATTAAAACGTTGTTTGCTGCTT