| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002A12 | Sequence | 358 | 001763 (3) | gb|KCW74122.1| | 3e-04 | hypothetical protein EUGRSUZ_E027582, partial [Eucalyptus grandis] | 669 | 008324 (3) | emb|CDO96812.1| | 4e-72 | unnamed protein product [Coffea canephora] |
| JMFF005C04 | Sequence | 492 | 001763 (3) | ref|XP_010042675.1| | 1e-41 | PREDICTED: CBL-interacting serine/threonine-protein kinase 20-like, partial [Eu | 695 | 008324 (3) | ref|XP_004234086.1| | 1e-78 | PREDICTED: CBL-interacting protein kinase 5-like [Solanum lycopersicum] |
| JMFF043L07 | Sequence | 630 | 001763 (3) | ref|XP_010042675.1| | 2e-49 | PREDICTED: CBL-interacting serine/threonine-protein kinase 20-like, partial [Eu | 580 | 008324 (3) | emb|CBI30698.3| | 7e-66 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF005C04+ GACCCAAATCCGATTAGAAGAA
____________________________________________________________
consensus GACCCAAATCCGATTAGAAGAA
. : . : . : . : . : . :
rJMFF005C04+ TCTCCCTTTCCAAACTCATGGAAAATTCCTGGTTCCAAAAGGATTTCACCCAACTCAAAC
rJMFF002A12+ TTCCAAACTCATGGAAAATTCCTGGTTCCAAAAGGATTTCACCCAACTCAAAC
____________________________________________________________
consensus TCTCCCTTTCCAAACTCATGGAAAATTCCTGGTTCCAAAAGGATTTCACCCAACTCAAAC
. : . : . : . : . : . :
rJMFF005C04+ CCATAACCCCCATCGTTGATTCCCAGAACGATGAATCTCCGAGAAGCGTTCTCGACATCT
rJMFF002A12+ CCATAACCCCCATCGCTGATTCCCAGAACGATGAATCTCCGAGAAGCGTTCTCGACATCT
____________________________________________________________
consensus CCATAACCCCCATCGTTGATTCCCAGAACGATGAATCTCCGAGAAGCGTTCTCGACATCT
. : . : . : . : . : . :
rJMFF005C04+ TCGACGACCGCTCCACCTCGGACCCCGCCGGATCCTCGATGAAACCCACGTGCCTGAACG
rJMFF002A12+ TCGACGACCGCTCCACCTCGGACCCCGCCGGATCCTCGATGAAACCCACGTGCCTGAACG
rJMFF043L07+ GACCCCGCCGGATCCTCGATGAAACCCACGTGCCTGAACG
____________________________________________________________
consensus TCGACGACCGCTCCACCTCGGACCCCGCCGGATCCTCGATGAAACCCACGTGCCTGAACG
. : . : . : . : . : . :
rJMFF005C04+ CATTCGACATCATTTCTCTCTCCCCAAGCTTCGACCTTTCAGGGCTCTTCGACGTGGACA
rJMFF002A12+ CATTCGACATCATTTCTCTCTCCCCAAGCTTCGACCTTTCAGGGCTCTTCGACGTGGACA
rJMFF043L07+ CATTCGACATCATTTCTCTCTCCCCAAGCTTCGACCTTTCAGGGCTCTTCGACGTGGACA
____________________________________________________________
consensus CATTCGACATCATTTCTCTCTCCCCAAGCTTCGACCTTTCAGGGCTCTTCGACGTGGACA
. : . : . : . : . : . :
rJMFF005C04+ CGAACAAGAAACCGGAGTCCCGGTTCACGACACAGCAGCCGGCTTCCACCATCGTTTCCA
rJMFF002A12+ CGAACAAGAAACCGGAGTCCCGGTTCACGACACAGCAGCCGGCTTCCACCATCGTTTCCA
rJMFF043L07+ CGAACAAGAAACCGGAGTCCCGGTTCACGACACAGCAGCCGGCTTCCACCATCGTTTCCA
____________________________________________________________
consensus CGAACAAGAAACCGGAGTCCCGGTTCACGACACAGCAGCCGGCTTCCACCATCGTTTCCA
. : . : . : . : . : . :
rJMFF005C04+ AGTTCGAGGAAATCGCAATGTCGGAGCACTTTCAGGTGCAGAAGAAAGACGGGATGGTGA
rJMFF002A12+ AGTTCGAGGAAATCGCAATGTCGGAGCACTTTCAGGTGCAGAAGAAAGACGGGATGGTGA
rJMFF043L07+ AGTTCGAGGAAATCGCAATGTCGGAGCACTTTCAGGTGCAGAAGAAAGACGGGATGGTGA
____________________________________________________________
consensus AGTTCGAGGAAATCGCAATGTCGGAGCACTTTCAGGTGCAGAAGAAAGACGGGATGGTGA
. : . : . : . : . : . :
rJMFF005C04+ AGCTTCAGGGGAACAAACAGGGGAGGAAAGGGCAGCTCGCCATTGACGCGGAGATTTTTG
rJMFF002A12+ AGCTTCAGGGGAACAAACAGGGGAGGAAAGGGCAGCTCGCCATTGACGCGGAGATTTTTG
rJMFF043L07+ AGCTTCAGGGGAACAAACAGGGGAGGAAAGGGCAGCTCGCCATTGACGCGGAGATTTTTG
____________________________________________________________
consensus AGCTTCAGGGGAACAAACAGGGGAGGAAAGGGCAGCTCGCCATTGACGCGGAGATTTTTG
. : . : . : . : . : . :
rJMFF005C04+ AGGTGACGCCGTCGTTTCACGTGGTGGAGGTGAAGAAAAGCTCCGGCGATACAATGGAGT
rJMFF002A12+ AGGTGACGCCGTCGTTTCACGTGGTGGAGGTGAAGAAAAGCTCCGGCGATACAATGGAGT
rJMFF043L07+ AGGTGACGCCGTCGTTTCACGTGGTGGAGGTGAAGAAAAGCTCCGGCGATACAATGGAGT
____________________________________________________________
consensus AGGTGACGCCGTCGTTTCACGTGGTGGAGGTGAAGAAAAGCTCCGGCGATACAATGGAGT
. : . : . : . : . : . :
rJMFF005C04+ ACAGAAATTTCTGCGAACAGGAGTTGAGACCGTCTCTCAAGGACATCATATGGAAATGGG
rJMFF002A12+ ACAGAAATTTCTGCGAACAGGAGTTGAGACCGTCTCTCAAGGACATCATATGGAAATGGG
rJMFF043L07+ ACAGAAATTTCTGCGAACAGGAGTTGAGACCGTCTCTCAAGGACATCATATGGAAATGGG
____________________________________________________________
consensus ACAGAAATTTCTGCGAACAGGAGTTGAGACCGTCTCTCAAGGACATCATATGGAAATGGG
. : . : . : . : . : . :
rJMFF005C04+ AAGGCAGTGAGCAGCCGCGTTAACGACAGCAACGTTGGGATGATCGGAGAATTTTTTAAC
rJMFF002A12+ AAGGCAGTGAGCAGCCGCGTTAACGACAGCAACGTTGGGATGATCGGAGAATTTTTTAAC
rJMFF043L07+ AAGGCAGTGAGCAGCCGCGTTAACGACAGCAACGTTGGGATGATCGGAGAATTTTTTAAC
____________________________________________________________
consensus AAGGCAGTGAGCAGCCGCGTTAACGACAGCAACGTTGGGATGATCGGAGAATTTTTTAAC
. : . : . : . : . : . :
rJMFF005C04+ GTTTTGATTACATTCTGAAACTGTTTTCAAAAGGTTGCCCATAGAAAGTTAGAAACTCTC
rJMFF002A12+ GTTTTGATTACATTCTGAAACTGTTTTCAAAAGGTTGCCCATAGAAAGTTAGAAACTCTC
rJMFF043L07+ GTTTTGATTACATTCTGAAACTGTTTTCAAAAGGTTGCCCATAGAAAGTTAGAAACTCTC
____________________________________________________________
consensus GTTTTGATTACATTCTGAAACTGTTTTCAAAAGGTTGCCCATAGAAAGTTAGAAACTCTC
. : . : . : . : . : . :
rJMFF005C04+ TGTATCAAGTTCA
rJMFF002A12+ TGTATCAAGTTCA
rJMFF043L07+ TGTATCAAGTTCATTAATGAAACTTTTTGTCCCAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TGTATCAAGTTCATTAATGAAACTTTTTGTCCCAAAAAAAAAAAAAAAACTCTCCAGGGT