Contig 008320:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026F22Sequence589010236 (5)769008320 (4)ref|XP_009765667.1|2e-35PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian
JMFF027M23Sequence609010236 (5)ref|XP_009765667.1|3e-32PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian731008320 (4)ref|XP_009765667.1|1e-30PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian
JMFF037M20Sequence570010236 (5)ref|XP_009765667.1|3e-27PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian791008320 (4)ref|XP_009765667.1|1e-36PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian
JMFF043D18Sequence607010236 (5)ref|XP_009765667.1|3e-32PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian640008320 (4)ref|XP_011095140.1|2e-09PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial

Alignment

This contig is upended


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rJMFF026F22+                                                        CGGCGGGNCAGGAA
rJMFF037M20+                                                                     A
                      ____________________________________________________________
consensus                                                           CGGCGGGNCAGGAA
 
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rJMFF026F22+          TGAATGAGTGGGTGTTAAGGGATGCGTACGAGGAGTTCGACAGAATGCGCGAGAGAAAAA
rJMFF027M23+                                              TCGACAGAATGCGCGAGAGAAAAA
rJMFF037M20+          TGAATGAGTGGGTGTTAAGGGATGCGTACGAGGTGTTCGACAGAATGCGCGAGAGAAAAA
                      ____________________________________________________________
consensus             TGAATGAGTGGGTGTTAAGGGATGCGTACGAGGTGTTCGACAGAATGCGCGAGAGAAAAA
 
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rJMFF026F22+          TTGTGGTTGAACACCGCGCATATGAGCTTGTGATTGAAGCCTTGTGTAATGGGAAGGAGG
rJMFF027M23+          TTGTGGTTGAACACCGCGCATATGAGCTTGTGATTGAAGCCTTGTGTAATGGGAAGGAGG
rJMFF037M20+          TTGTGGTTGAACACCGCGCATATGAGCTTGTGATTGAAGCCTTGTGTAATGGGAAGGAGG
                      ____________________________________________________________
consensus             TTGTGGTTGAACACCGCGCATATGAGCTTGTGATTGAAGCCTTGTGTAATGGGAAGGAGG
 
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rJMFF026F22+          TAGACAAAGCTCTGGCAAGTTTGGTGGAGATGGTTAGAATTGGGTATTCCCCAGGGAGAT
rJMFF027M23+          TAGACAAAGCTCTGGCAAGTTTGGTGGAGATGGTTAGAATTGGGTATTCCCCAGGGAGAT
rJMFF037M20+          TAGACAAAGCTCTGGCAAGTTTGGTGGAGATGGTTAGAATTGGGTATTCCCCAGGGAGAT
                      ____________________________________________________________
consensus             TAGACAAAGCTCTGGCAAGTTTGGTGGAGATGGTTAGAATTGGGTATTCCCCAGGGAGAT
 
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rJMFF026F22+          TCACCTTCTGCAATGTCATTCGTGCGCTTTGTGCAGATGGAAAGGTGGATGGCGCCTTAT
rJMFF027M23+          TCACCTTCTGCAATGTCATTCGTGCGCTTTGTGCAGATGGAAAGGTGGATGGCGCCTTAT
rJMFF037M20+          TCACCTTCTGCAATGTCATTCGTGCGCTTTGTGCAGATGGAAAGGTGGATGGCGCCTTAT
rJMFF043D18+                                          GCAGATGGAAAGGTGGATGGCGCCTTAT
                      ____________________________________________________________
consensus             TCACCTTCTGCAATGTCATTCGTGCGCTTTGTGCAGATGGAAAGGTGGATGGCGCCTTAT
 
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rJMFF026F22+          CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGAGTTCCTCCATATAACA
rJMFF027M23+          CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGATTTCCTCCATATAACA
rJMFF037M20+          CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGAGTTCCTCCATATAACA
rJMFF043D18+          CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGATTTCCTCCATATAACA
                      ____________________________________________________________
consensus             CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGATTTCCTCCATATAACA
 
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rJMFF026F22+          TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
rJMFF027M23+          TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
rJMFF037M20+          TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
rJMFF043D18+          TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
                      ____________________________________________________________
consensus             TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
 
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rJMFF026F22+          CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
rJMFF027M23+          CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
rJMFF037M20+          CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
rJMFF043D18+          CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
                      ____________________________________________________________
consensus             CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
 
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rJMFF026F22+          CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
rJMFF027M23+          CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
rJMFF037M20+          CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
rJMFF043D18+          CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
                      ____________________________________________________________
consensus             CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
 
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rJMFF026F22+          CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
rJMFF027M23+          CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
rJMFF037M20+          CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
rJMFF043D18+          CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
                      ____________________________________________________________
consensus             CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
 
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rJMFF026F22+          TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
rJMFF027M23+          TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
rJMFF037M20+          TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
rJMFF043D18+          TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
                      ____________________________________________________________
consensus             TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
 
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rJMFF026F22+          TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
rJMFF027M23+          TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
rJMFF037M20+          TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
rJMFF043D18+          TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
                      ____________________________________________________________
consensus             TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
 
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rJMFF026F22+          CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
rJMFF027M23+          CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
rJMFF037M20+          CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
rJMFF043D18+          CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
                      ____________________________________________________________
consensus             CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
 
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rJMFF026F22+          CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCT                         
rJMFF027M23+          CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCTTGTAAATTGTAT             
rJMFF037M20+          CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCTTGTAAATTGTATTGTTTAATAATAA
rJMFF043D18+          CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCTTGTAAATTGTATTGTTTAATAATAA
                      ____________________________________________________________
consensus             CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCTTGTAAATTGTATTGTTTAATAATAA
 
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rJMFF037M20+          A                                                           
rJMFF043D18+          ATTTCTTGTCATAGTTTCAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATTTCTTGTCATAGTTTCAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG