clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF002K11 | Sequence | 837 | 017307 | ref|XP_003619702.1| | 7e-107 | Ubiquitin-like protein [Medicago truncatula] | 855 | 008315 (10) | gb|AHI85710.1| | 3e-101 | stress-induced protein 5, partial [Capsicum annuum] |
JMFF011I06 | Sequence | 790 | 004647 (11) | emb|CBI22349.3| | 7e-161 | unnamed protein product [Vitis vinifera] | 920 | 008315 (10) | ref|XP_009114489.1| | 6e-137 | PREDICTED: polyubiquitin-like [Brassica rapa] |
JMFF020M18 | Sequence | 772 | 004647 (11) | ref|XP_003619702.1| | 2e-123 | Ubiquitin-like protein [Medicago truncatula] | 910 | 008315 (10) | gb|ABH08753.1| | 6e-130 | ubiquitin [Arabidopsis thaliana] |
JMFF024A09 | Sequence | 765 | 004647 (11) | emb|CBI22349.3| | 5e-124 | unnamed protein product [Vitis vinifera] | 679 | 008315 (10) | ref|NP_001190681.1| | 4e-71 | ubiquitin 11 [Arabidopsis thaliana] ref|XP_003626480.1| Ubiquitin-like protein [ |
JMFF035M14 | Sequence | 776 | 004647 (11) | emb|CBI22349.3| | 8e-129 | unnamed protein product [Vitis vinifera] | 851 | 008315 (10) | gb|AAF04147.1| | 1e-115 | ubiquitin precursor [Hevea brasiliensis] |
JMFF042O14 | Sequence | 652 | 004647 (11) | ref|XP_003619702.1| | 1e-130 | Ubiquitin-like protein [Medicago truncatula] | 579 | 008315 (10) | emb|CAC84144.1| | 1e-63 | polyubiquitin-like protein [Nicotiana tabacum] |
JMFF045C12 | Sequence | 614 | 004647 (11) | ref|XP_003619702.1| | 1e-119 | Ubiquitin-like protein [Medicago truncatula] | 604 | 008315 (10) | ref|NP_001190681.1| | 6e-91 | ubiquitin 11 [Arabidopsis thaliana] ref|XP_003626480.1| Ubiquitin-like protein [ |
JMFF051B10 | Sequence | 571 | 004647 (11) | ref|XP_003619702.1| | 2e-109 | Ubiquitin-like protein [Medicago truncatula] | 513 | 008315 (10) | emb|CAC84144.1| | 3e-57 | polyubiquitin-like protein [Nicotiana tabacum] |
JMFN037B12 | Sequence | 589 | 008315 (10) | gb|AFW66442.1| | 2e-132 | putative ubiquitin family protein, partial [Zea mays] | |||||
JMSF040E04 | Sequence | 619 | 004647 (11) | ref|XP_003619702.1| | 1e-110 | Ubiquitin-like protein [Medicago truncatula] | 1047 | 008315 (10) | emb|CAA48140.1| | 1e-172 | ubiquitin [Antirrhinum majus] |
This contig is upended
. : . : . : . : . : . :
rJMSF040E04+ AAAANTNTTANTGGGCAAGANCCCNTCANTCTGAAGGTGGNGAGNTTCGG
____________________________________________________________
consensus AAAANTNTTANTGGGCAAGANCCCNTCANTCTGAAGGTGGNGAGNTTCGG
. : . : . : . : . : . :
rJMSF040E04+ ATTACCNTTGNCCANTGNGAAGGNNTAAGNATNCAAGATAAGGNAAGGGGATTTCCCCCA
____________________________________________________________
consensus ATTACCNTTGNCCANTGNGAAGGNNTAAGNATNCAAGATAAGGNAAGGGGATTTCCCCCA
. : . : . : . : . : . :
rJMSF040E04+ GATCAACAGAGGNTGATTTTTNCCCGGAAAGCAGCTTGAAGATGGCCCGTANTCTTGCAG
____________________________________________________________
consensus GATCAACAGAGGNTGATTTTTNCCCGGAAAGCAGCTTGAAGATGGCCCGTANTCTTGCAG
. : . : . : . : . : . :
rJMSF040E04+ ANTACAACATCCAAAAAGAGTCCACCCTCCATNTTGTCCTCCGCCTGCGTGGTGGCATGC
____________________________________________________________
consensus ANTACAACATCCAAAAAGAGTCCACCCTCCATNTTGTCCTCCGCCTGCGTGGTGGCATGC
. : . : . : . : . : . :
JMFN037B12- ACTGGGAAGACCATCACCCTGGAGGTTGAAAGTTCAGATA
rJMSF040E04+ AGATNTTTGTCAAAACACTTACTGGGAAGACCATCACCCTGGAGGTTGAAAGTTCAGATA
____________________________________________________________
consensus AGATNTTTGTCAAAACACTTACTGGGAAGACCATCACCCTGGAGGTTGAAAGTTCAGATA
. : . : . : . : . : . :
JMFN037B12- CCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAACAAA
rJMSF040E04+ CCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAACAAA
rJMFF035M14+ ATTCCTCCAGATCAACAAA
rJMFF011I06+ TCCAAGATANGGAAGGGATTCCCCCAGATCAACAGA
____________________________________________________________
consensus CCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAACAAA
. : . : . : . : . : . :
JMFN037B12- GGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
rJMSF040E04+ GGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
rJMFF035M14+ GGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
rJMFF020M18+ CTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
rJMFF011I06+ GGCTGATTTTTGCCGGAAAGCAGCTTGAAGATGGCCGTACTCTTGCAGACTACAACATCC
____________________________________________________________
consensus GGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
. : . : . : . : . : . :
JMFN037B12- AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMSF040E04+ AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMFF035M14+ AAAAAGAGTCCACCCNTACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMFF020M18+ AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMFF011I06+ AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMFF002K11+ TACATNTTGTCCTCCGCCTTCGTGGTGGCATGCAGATNTTTGTC
____________________________________________________________
consensus AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
. : . : . : . : . : . :
JMFN037B12- AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMSF040E04+ AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF035M14+ AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF020M18+ AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF011I06+ AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF045C12+ AGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF024A09+ GGGAAGNCCATCCCCCTGGAGGTTGAGNGTTCAGATACCATTGGCAAT
rJMFF002K11+ AAAACNCTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
____________________________________________________________
consensus AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
. : . : . : . : . : . :
JMFN037B12- GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMSF040E04+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF035M14+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF020M18+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF011I06+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF045C12+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF024A09+ GTGAAGGCAAAGATTCAGGNCAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATTTTT
rJMFF002K11+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
____________________________________________________________
consensus GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
. : . : . : . : . : . :
JMFN037B12- GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGCCTCT
rJMSF040E04+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF035M14+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF020M18+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF011I06+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF045C12+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF024A09+ GCAGGTAAACAGCTTGAGGATGGGAGGACNCTTGCAGAATACAACATTCAGAAGGAGTTT
rJMFF002K11+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTTT
rJMFF051B10+ CATTCAGAAGGAGTCT
rJMFF042O14+ GGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
____________________________________________________________
consensus GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
. : . : . : . : . : . :
JMFN037B12- ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMSF040E04+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF035M14+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF020M18+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF011I06+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF045C12+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF024A09+ NCGCTCCATTTGGTGCTGCGATTGAGGGGCGGTANGCAGATTTTTGTCAAGACCCTTACA
rJMFF002K11+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATNTTTGTCAAGACCCTTACA
rJMFF051B10+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF042O14+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
____________________________________________________________
consensus ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
. : . : . : . : . : . :
JMFN037B12- GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMSF040E04+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF035M14+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF020M18+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF011I06+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF045C12+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF024A09+ GGGAAGACCATCNCTTTGGAGGTGGAGAGTTCAGATNCTATTGATAATGTGAAGGNTAAG
rJMFF002K11+ GGGAAGACCATCACTNTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGNTAAG
rJMFF051B10+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF042O14+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
____________________________________________________________
consensus GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
. : . : . : . : . : . :
JMFN037B12- ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCA
rJMSF040E04+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF035M14+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF020M18+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF011I06+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF045C12+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF024A09+ ATTCAGGACAAGGAAGGGATTCCNCCAGATCAGCAGAGGNTGATATTTGCTGGCAAGCAG
rJMFF002K11+ ATTCAGGACAAGGAAGGGATTCCNCCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF051B10+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF042O14+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
____________________________________________________________
consensus ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
. : . : . : . : . : . :
rJMSF040E04+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF035M14+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF020M18+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF011I06+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF045C12+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF024A09+ CTNGAGGATGGGNGCNCNCTTGCAGNCTNCAATATCCAGAAGGAGTCCNCCCTTCATTTT
rJMFF002K11+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCNCCCTTCATNTT
rJMFF051B10+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF042O14+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
____________________________________________________________
consensus CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
. : . : . : . : . : . :
rJMSF040E04+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTT
rJMFF035M14+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF020M18+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF011I06+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF045C12+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF024A09+ GTTTTTNGACTTCGTGGNGGCTTTTAAATATCAAGTTTTATAATNTNTTTGNTATACTTN
rJMFF002K11+ GTTNTTCGACTTCGTGGTGGCTTTTAAATATCAAGTNTTATAATCTCTTTGCTATACTTC
rJMFF051B10+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF042O14+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
____________________________________________________________
consensus GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
. : . : . : . : . : . :
rJMSF040E04+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF035M14+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF020M18+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF011I06+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF045C12+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF024A09+ TGTCCTTATTTCAAGACAATCCTTGCAACTGNTATAATATAATTGGCAGTACTTANGTTT
rJMFF002K11+ TGTCCTTATTTCAAGACAATCCTTGCAGCTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF051B10+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF042O14+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
____________________________________________________________
consensus TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
. : . : . : . : . : . :
rJMSF040E04+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTT
rJMFF035M14+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF020M18+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTG
rJMFF011I06+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF045C12+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF024A09+ NTGTTTTAGAATAATNTTGTTACCAAAGNGGTTTCCTTTTGGGCATTTAANGCTTGTTGG
rJMFF002K11+ CTGTTNTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF051B10+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF042O14+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
____________________________________________________________
consensus CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
. : . : . : . : . : . :
rJMFF035M14+ TTTCCTTT
rJMFF011I06+ TTTCCTTTTCAATTAATGCATG
rJMFF045C12+ TTTCCTTTTCAATTAATGCATGTTGGTTCTCTGCC
rJMFF024A09+ TTTCCTTTTCAANTAANGCANGTTGGTT
rJMFF002K11+ TTTCCTTTTCAATTAATGCATGTTGGTTCTCTGCC
rJMFF051B10+ TTTCCTTTTCAATTAATGCATGTTGGTT
rJMFF042O14+ TTTCCTTTTCAATTAATGCATGTTGGTTCTCTGCCCTTTCTGCATGTTTGCCTCTTCTGT
____________________________________________________________
consensus TTTCCTTTTCAATTAATGCATGTTGGTTCTCTGCCCTTTCTGCATGTTTGCCTCTTCTGT
. : . : . : . : . : . :
rJMFF042O14+ TCATTTGTGCGTAGAGATGGCACAAACATTTAATTTATCTAAAAAAAAAAATTATTTTAG
____________________________________________________________
consensus TCATTTGTGCGTAGAGATGGCACAAACATTTAATTTATCTAAAAAAAAAAATTATTTTAG