Contig 008315:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002K11Sequence837017307ref|XP_003619702.1|7e-107Ubiquitin-like protein [Medicago truncatula]855008315 (10)gb|AHI85710.1|3e-101stress-induced protein 5, partial [Capsicum annuum]
JMFF011I06Sequence790004647 (11)emb|CBI22349.3|7e-161unnamed protein product [Vitis vinifera]920008315 (10)ref|XP_009114489.1|6e-137PREDICTED: polyubiquitin-like [Brassica rapa]
JMFF020M18Sequence772004647 (11)ref|XP_003619702.1|2e-123Ubiquitin-like protein [Medicago truncatula]910008315 (10)gb|ABH08753.1|6e-130ubiquitin [Arabidopsis thaliana]
JMFF024A09Sequence765004647 (11)emb|CBI22349.3|5e-124unnamed protein product [Vitis vinifera]679008315 (10)ref|NP_001190681.1|4e-71ubiquitin 11 [Arabidopsis thaliana] ref|XP_003626480.1| Ubiquitin-like protein [
JMFF035M14Sequence776004647 (11)emb|CBI22349.3|8e-129unnamed protein product [Vitis vinifera]851008315 (10)gb|AAF04147.1|1e-115ubiquitin precursor [Hevea brasiliensis]
JMFF042O14Sequence652004647 (11)ref|XP_003619702.1|1e-130Ubiquitin-like protein [Medicago truncatula]579008315 (10)emb|CAC84144.1|1e-63polyubiquitin-like protein [Nicotiana tabacum]
JMFF045C12Sequence614004647 (11)ref|XP_003619702.1|1e-119Ubiquitin-like protein [Medicago truncatula]604008315 (10)ref|NP_001190681.1|6e-91ubiquitin 11 [Arabidopsis thaliana] ref|XP_003626480.1| Ubiquitin-like protein [
JMFF051B10Sequence571004647 (11)ref|XP_003619702.1|2e-109Ubiquitin-like protein [Medicago truncatula]513008315 (10)emb|CAC84144.1|3e-57polyubiquitin-like protein [Nicotiana tabacum]
JMFN037B12Sequence589008315 (10)gb|AFW66442.1|2e-132putative ubiquitin family protein, partial [Zea mays]
JMSF040E04Sequence619004647 (11)ref|XP_003619702.1|1e-110Ubiquitin-like protein [Medicago truncatula]1047008315 (10)emb|CAA48140.1|1e-172ubiquitin [Antirrhinum majus]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040E04+ AAAANTNTTANTGGGCAAGANCCCNTCANTCTGAAGGTGGNGAGNTTCGG
                      ____________________________________________________________
consensus AAAANTNTTANTGGGCAAGANCCCNTCANTCTGAAGGTGGNGAGNTTCGG
 
. : . : . : . : . : . :
rJMSF040E04+ ATTACCNTTGNCCANTGNGAAGGNNTAAGNATNCAAGATAAGGNAAGGGGATTTCCCCCA
                      ____________________________________________________________
consensus ATTACCNTTGNCCANTGNGAAGGNNTAAGNATNCAAGATAAGGNAAGGGGATTTCCCCCA
 
. : . : . : . : . : . :
rJMSF040E04+ GATCAACAGAGGNTGATTTTTNCCCGGAAAGCAGCTTGAAGATGGCCCGTANTCTTGCAG
                      ____________________________________________________________
consensus GATCAACAGAGGNTGATTTTTNCCCGGAAAGCAGCTTGAAGATGGCCCGTANTCTTGCAG
 
. : . : . : . : . : . :
rJMSF040E04+ ANTACAACATCCAAAAAGAGTCCACCCTCCATNTTGTCCTCCGCCTGCGTGGTGGCATGC
                      ____________________________________________________________
consensus ANTACAACATCCAAAAAGAGTCCACCCTCCATNTTGTCCTCCGCCTGCGTGGTGGCATGC
 
. : . : . : . : . : . :
JMFN037B12- ACTGGGAAGACCATCACCCTGGAGGTTGAAAGTTCAGATA
rJMSF040E04+ AGATNTTTGTCAAAACACTTACTGGGAAGACCATCACCCTGGAGGTTGAAAGTTCAGATA
                      ____________________________________________________________
consensus AGATNTTTGTCAAAACACTTACTGGGAAGACCATCACCCTGGAGGTTGAAAGTTCAGATA
 
. : . : . : . : . : . :
JMFN037B12- CCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAACAAA
rJMSF040E04+ CCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAACAAA
rJMFF035M14+ ATTCCTCCAGATCAACAAA
rJMFF011I06+ TCCAAGATANGGAAGGGATTCCCCCAGATCAACAGA
                      ____________________________________________________________
consensus CCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAACAAA
 
. : . : . : . : . : . :
JMFN037B12- GGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
rJMSF040E04+ GGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
rJMFF035M14+ GGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
rJMFF020M18+ CTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
rJMFF011I06+ GGCTGATTTTTGCCGGAAAGCAGCTTGAAGATGGCCGTACTCTTGCAGACTACAACATCC
                      ____________________________________________________________
consensus GGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAACATCC
 
. : . : . : . : . : . :
JMFN037B12- AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMSF040E04+ AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMFF035M14+ AAAAAGAGTCCACCCNTACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMFF020M18+ AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMFF011I06+ AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
rJMFF002K11+ TACATNTTGTCCTCCGCCTTCGTGGTGGCATGCAGATNTTTGTC
                      ____________________________________________________________
consensus AAAAAGAGTCCACCC-TACATCTTGTCCTCCGCCTTCGTGGTGGCATGCAGATCTTTGTC
 
. : . : . : . : . : . :
JMFN037B12- AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMSF040E04+ AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF035M14+ AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF020M18+ AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF011I06+ AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF045C12+ AGGTTGAGAGTTCAGATACCATTGACAAT
rJMFF024A09+ GGGAAGNCCATCCCCCTGGAGGTTGAGNGTTCAGATACCATTGGCAAT
rJMFF002K11+ AAAACNCTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
                      ____________________________________________________________
consensus AAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCAGATACCATTGACAAT
 
. : . : . : . : . : . :
JMFN037B12- GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMSF040E04+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF035M14+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF020M18+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF011I06+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF045C12+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
rJMFF024A09+ GTGAAGGCAAAGATTCAGGNCAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATTTTT
rJMFF002K11+ GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
                      ____________________________________________________________
consensus GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTGATCTTT
 
. : . : . : . : . : . :
JMFN037B12- GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGCCTCT
rJMSF040E04+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF035M14+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF020M18+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF011I06+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF045C12+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
rJMFF024A09+ GCAGGTAAACAGCTTGAGGATGGGAGGACNCTTGCAGAATACAACATTCAGAAGGAGTTT
rJMFF002K11+ GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTTT
rJMFF051B10+ CATTCAGAAGGAGTCT
rJMFF042O14+ GGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
                      ____________________________________________________________
consensus GCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAACATTCAGAAGGAGTCT
 
. : . : . : . : . : . :
JMFN037B12- ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMSF040E04+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF035M14+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF020M18+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF011I06+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF045C12+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF024A09+ NCGCTCCATTTGGTGCTGCGATTGAGGGGCGGTANGCAGATTTTTGTCAAGACCCTTACA
rJMFF002K11+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATNTTTGTCAAGACCCTTACA
rJMFF051B10+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
rJMFF042O14+ ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
                      ____________________________________________________________
consensus ACGCTCCATTTGGTGCTGCGATTGAGGGGCGGTATGCAGATCTTTGTCAAGACCCTTACA
 
. : . : . : . : . : . :
JMFN037B12- GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMSF040E04+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF035M14+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF020M18+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF011I06+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF045C12+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF024A09+ GGGAAGACCATCNCTTTGGAGGTGGAGAGTTCAGATNCTATTGATAATGTGAAGGNTAAG
rJMFF002K11+ GGGAAGACCATCACTNTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGNTAAG
rJMFF051B10+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
rJMFF042O14+ GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
                      ____________________________________________________________
consensus GGGAAGACCATCACTCTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAGGCTAAG
 
. : . : . : . : . : . :
JMFN037B12- ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCA
rJMSF040E04+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF035M14+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF020M18+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF011I06+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF045C12+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF024A09+ ATTCAGGACAAGGAAGGGATTCCNCCAGATCAGCAGAGGNTGATATTTGCTGGCAAGCAG
rJMFF002K11+ ATTCAGGACAAGGAAGGGATTCCNCCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF051B10+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
rJMFF042O14+ ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
                      ____________________________________________________________
consensus ATTCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTGATATTTGCTGGCAAGCAG
 
. : . : . : . : . : . :
rJMSF040E04+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF035M14+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF020M18+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF011I06+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF045C12+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF024A09+ CTNGAGGATGGGNGCNCNCTTGCAGNCTNCAATATCCAGAAGGAGTCCNCCCTTCATTTT
rJMFF002K11+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCNCCCTTCATNTT
rJMFF051B10+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
rJMFF042O14+ CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
                      ____________________________________________________________
consensus CTCGAGGATGGGCGCACACTTGCAGACTACAATATCCAGAAGGAGTCCACCCTTCATCTT
 
. : . : . : . : . : . :
rJMSF040E04+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTT
rJMFF035M14+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF020M18+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF011I06+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF045C12+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF024A09+ GTTTTTNGACTTCGTGGNGGCTTTTAAATATCAAGTTTTATAATNTNTTTGNTATACTTN
rJMFF002K11+ GTTNTTCGACTTCGTGGTGGCTTTTAAATATCAAGTNTTATAATCTCTTTGCTATACTTC
rJMFF051B10+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
rJMFF042O14+ GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
                      ____________________________________________________________
consensus GTTCTTCGACTTCGTGGTGGCTTTTAAATATCAAGTCTTATAATCTCTTTGCTATACTTC
 
. : . : . : . : . : . :
rJMSF040E04+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF035M14+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF020M18+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF011I06+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF045C12+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF024A09+ TGTCCTTATTTCAAGACAATCCTTGCAACTGNTATAATATAATTGGCAGTACTTANGTTT
rJMFF002K11+ TGTCCTTATTTCAAGACAATCCTTGCAGCTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF051B10+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
rJMFF042O14+ TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
                      ____________________________________________________________
consensus TGTCCTTATTTCAAGACAATCCTTGCAACTGCTATAATATAATTGGCAGTACTTATGTTT
 
. : . : . : . : . : . :
rJMSF040E04+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTT
rJMFF035M14+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF020M18+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTG
rJMFF011I06+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF045C12+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF024A09+ NTGTTTTAGAATAATNTTGTTACCAAAGNGGTTTCCTTTTGGGCATTTAANGCTTGTTGG
rJMFF002K11+ CTGTTNTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF051B10+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
rJMFF042O14+ CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
                      ____________________________________________________________
consensus CTGTTCTAGAATAATCTTGTTACCAAAGTGGTTTCCTTCTGGGCATTTAATGCTTGTTGG
 
. : . : . : . : . : . :
rJMFF035M14+ TTTCCTTT
rJMFF011I06+ TTTCCTTTTCAATTAATGCATG
rJMFF045C12+ TTTCCTTTTCAATTAATGCATGTTGGTTCTCTGCC
rJMFF024A09+ TTTCCTTTTCAANTAANGCANGTTGGTT
rJMFF002K11+ TTTCCTTTTCAATTAATGCATGTTGGTTCTCTGCC
rJMFF051B10+ TTTCCTTTTCAATTAATGCATGTTGGTT
rJMFF042O14+ TTTCCTTTTCAATTAATGCATGTTGGTTCTCTGCCCTTTCTGCATGTTTGCCTCTTCTGT
                      ____________________________________________________________
consensus TTTCCTTTTCAATTAATGCATGTTGGTTCTCTGCCCTTTCTGCATGTTTGCCTCTTCTGT
 
. : . : . : . : . : . :
rJMFF042O14+ TCATTTGTGCGTAGAGATGGCACAAACATTTAATTTATCTAAAAAAAAAAATTATTTTAG
                      ____________________________________________________________
consensus TCATTTGTGCGTAGAGATGGCACAAACATTTAATTTATCTAAAAAAAAAAATTATTTTAG