Contig 008314:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003H12Sequence616007394 (5)ref|XP_010031356.1|8e-111PREDICTED: pyruvate kinase, cytosolic isozyme [Eucalyptus grandis] ref|XP_010031696008314 (5)ref|XP_004489183.1|5e-114PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cicer arietinum]
JMFF007F07Sequence604007394 (5)ref|XP_010031356.1|6e-96PREDICTED: pyruvate kinase, cytosolic isozyme [Eucalyptus grandis] ref|XP_010031735008314 (5)ref|XP_004489183.1|4e-127PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cicer arietinum]
JMFF026O13Sequence604007394 (5)ref|XP_010031356.1|6e-96PREDICTED: pyruvate kinase, cytosolic isozyme [Eucalyptus grandis] ref|XP_010031742008314 (5)ref|XP_004489183.1|3e-142PREDICTED: pyruvate kinase, cytosolic isozyme-like [Cicer arietinum]
JMFF042N01Sequence625007394 (5)ref|XP_010031356.1|5e-90PREDICTED: pyruvate kinase, cytosolic isozyme [Eucalyptus grandis] ref|XP_010031404008314 (5)gb|AFK43671.1|2e-15unknown [Lotus japonicus]
JMFN035P17Sequence490008314 (5)ref|XP_009775114.1|4e-65PREDICTED: pyruvate kinase, cytosolic isozyme [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+                                                TTGTTGGCAAGCCTGTAGTCAC
rJMFF007F07+                                                           CCTGTAGTCAC
                      ____________________________________________________________
consensus                                                   TTGTTGGCAAGCCTGTAGTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          TGCCACTCAGATGCTTGAATCAATGATCAAGTCCCCCC-GGCCAACCCGAGCCGAGGCAA
rJMFF007F07+          TGCCACTCAGATGCTTGAATCAATGATCAAGTCCCCCCGGGCCAACCCGAGCCGAGGCAA
                      ____________________________________________________________
consensus             TGCCACTCAGATGCTTGAATCAATGATCAAGTCCCCCCGGGCCAACCCGAGCCGAGGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          CGGATGTGGCTAACGCTGTCCTAGATGGCACCGACTGTGTGATGCTCAGTGGCGAGAGTG
rJMFF007F07+          CGGATGTGGCTAACGCTGTCCTAGATGGCACCGACTGTGTGATGCTCAGTGGCGAGAGTG
rJMFF003H12+                                         CGACTGTGTGATGCTCAGTGGCGAGAGTG
                      ____________________________________________________________
consensus             CGGATGTGGCTAACGCTGTCCTAGATGGCACCGACTGTGTGATGCTCAGTGGCGAGAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          CTGCCGGGGCGTATCCCGAGCTTGCGGTGAAAATTATGGCTCGAATCTGCATCGAGGCAG
rJMFF007F07+          CTGCCGGGGCGTATCCCGAGCTTGCGGTGAAAATTATGGCTCGAATCTGCATCGAGGCAG
rJMFF003H12+          CTGCCGGGGCGTATCCCGAGCTTGCGGTGAAAATTATGGCTCGAATCTGCATCGAGGCAG
                      ____________________________________________________________
consensus             CTGCCGGGGCGTATCCCGAGCTTGCGGTGAAAATTATGGCTCGAATCTGCATCGAGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          AATCTTCACTAGACTATGGAGCTATATTCAAGGAGATGATAAGATCAACCCCATTGCCAA
rJMFF007F07+          AATCTTCACTAGACTATGGAGCTATATTCAAGGAGATGATAAGATCAACCCCATTGCCAA
rJMFF003H12+          AATCTTCACTAGACTATGGAGCTATATTCAAGGAGATGATAAGATCAACCCCATTGCCAA
                      ____________________________________________________________
consensus             AATCTTCACTAGACTATGGAGCTATATTCAAGGAGATGATAAGATCAACCCCATTGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          TGAGCCCATTGGAGTCCCTTGCGTCCTCGGCTGTGCGCACAGCTTACAAGGCTCAAGCGA
rJMFF007F07+          TGAGCCCATTGGAGTCCCTTGCGTCCTCGGCTGTGCGCACAGCTTACAAGGCTCAAGCGA
JMFN035P17-                                                               TCAAGCGA
rJMFF003H12+          TGAGCCCATTGGAGTCCCTTGCGTCCTCGGCTGTGCGCACAGCTTACAAGGCTCAAGCGA
                      ____________________________________________________________
consensus             TGAGCCCATTGGAGTCCCTTGCGTCCTCGGCTGTGCGCACAGCTTACAAGGCTCAAGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          AGCTCATCGTTGTGTTGACCCGTGGTGGGACTACTGCCAAGCTGGTTGCCAAATACAGGC
rJMFF007F07+          AGCTCATCGTTGTGTTGACCCGTGGTGGGACTACTGCCAAGCTGGTTGCCAAATACAGGC
JMFN035P17-           AGCTCATCGTTGTGTTGACCCGTGGTGGGACTACTGCCAAGCTGGTTGCCAAATACAGGC
rJMFF003H12+          AGCTCATCGTTGTGTTGACCCGTGGTGGGACTACTGCCAAGCTGGTTGCCAAATACAGGC
                      ____________________________________________________________
consensus             AGCTCATCGTTGTGTTGACCCGTGGTGGGACTACTGCCAAGCTGGTTGCCAAATACAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          CGGCTGTTCCAATCCTGTCGGTCGTGGTGCCCGTTTTAACAACAGACTCGTTCGATTGGA
rJMFF007F07+          CGGCTGTTCCAATCCTGTCGGTCGTGGTGCCCGTTTTAACAACAGACTCGTTCGATTGGA
JMFN035P17-           CGGCTGTTCCAATCCTGTCGGTCGTGGTGCCCGTTTTAACAACAGACTCGTTCGATTGGA
rJMFF003H12+          CGGCTGTTCCAATCCTGTCGGTCGTGGTGCCCGTTTTAACAACAGACTCGTTCGATTGGA
                      ____________________________________________________________
consensus             CGGCTGTTCCAATCCTGTCGGTCGTGGTGCCCGTTTTAACAACAGACTCGTTCGATTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          GCATCAGTGACGAGACCCCTGCCAGGCACAGCTTGATCTACAGAGGCCTGATTCCACTCC
rJMFF007F07+          GCATCAGTGACGAGACCCCTGCCAGGCACAGCTTGATCTACAGAGGCCTGATTCCACTCC
JMFN035P17-           GCATCAGTGACGAGACCCCTGCCAGGCACAGCTTGATCTACAGAGGCCTGATTCCACTCC
rJMFF003H12+          GCATCAGTGACGAGACCCCTGCCAGGCACAGCTTGATCTACAGAGGCCTGATTCCACTCC
                      ____________________________________________________________
consensus             GCATCAGTGACGAGACCCCTGCCAGGCACAGCTTGATCTACAGAGGCCTGATTCCACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          TGGCCGAAGGGTCTGCGAAAGCCACTGATACTGAATCAACCGAGGTCATTCTTCAAGCCG
rJMFF007F07+          TGGCCGAAGGGTCTGCGAAAGCCACTGATACTGAATCAACCGAGGTCATTCTTCAAGCCG
JMFN035P17-           TGGCCGAAGGGTCAGCGAAAGCCACTGATACTGAATCAACCGAGGTCATTCTTCAAGCCG
rJMFF003H12+          TGGCCGAAGGGTCTGCGAAAGCCACTGATACTGAATCAACCGAGGTCATTCTTCAAGCCG
rJMFF042N01+                          GAAAGCCCCTGATACTGAATCAACCGAGGTCATTTTTCAAGCCG
                      ____________________________________________________________
consensus             TGGCCGAAGGGTCTGCGAAAGCCACTGATACTGAATCAACCGAGGTCATTCTTCAAGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          CCTTGAAGTCAGCTGTCCAGAAAGGGCTGTGCCTGCCCGGGGATGCTGTCGTGGCACTTC
rJMFF007F07+          CCTTGAAGTCAGCTGTCCAGAAAGGGCTGTGCCTGCCCGGGGATGCTGTCGTGGCACTTC
JMFN035P17-           CCTTGAAGTCAGCTGTCCAGAAAGGGCTGTGCCTGCCCGGGGATGCTGTCGTGGCACTTC
rJMFF003H12+          CCTTGAAGTCAGCTGTCCAGAAAGGGCTGTGCCTGCCCGGGGATGCTGTCGTGGCACTTC
rJMFF042N01+          CCTTGAAGTCAGCTGTCCAGAAAGGGCTGTGCCTGCCCGGGGATGCTGTCGTGGCACTTC
                      ____________________________________________________________
consensus             CCTTGAAGTCAGCTGTCCAGAAAGGGCTGTGCCTGCCCGGGGATGCTGTCGTGGCACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          ATCGGATCGGTGCTGCATCTGTTATTAAGATCTGCATTGTGAAGTAGTTGCAGTGTTTTC
rJMFF007F07+          ATCGGATCGGTGCTGCATCTGTTATTAAGATCTGCATTGTGAAGTAGTTGCAGTGTTTTC
JMFN035P17-           ATCGGATCGGTGCTGCATCTGTTATTAAGATCTGCATTGTGAAGTAGTTGCAGTGTTTTC
rJMFF003H12+          ATCGGATCGGTGCTGCATCTGTTATTAAGATCTGCATTGTGAAGTAGTTGCAGTGTTTTC
rJMFF042N01+          ATCGGATCGGTGCTGCATTTGTTATTAAGATTTGCATTGTGAAGTAGTTGCAGTGTTTTC
                      ____________________________________________________________
consensus             ATCGGATCGGTGCTGCATCTGTTATTAAGATCTGCATTGTGAAGTAGTTGCAGTGTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026O13+          AGGTTAGATAATGGAGTGTGCTATTATGCATAATCATCTGTTTTTT              
rJMFF007F07+          AGGTTAGATAATGGAGTGTGCTATTATGCATAATCATCTGTTTTTT              
JMFN035P17-           AGGTTAGATAATGGAGTGTGCTATTATGCATAATCATCTGTTTTTTTGAAATAAGGGACT
rJMFF003H12+          AGGTTAGATAATGGAGTGTGCTATTATGCATAATCATCTGTTTTTTTGAAATAAGGGACT
rJMFF042N01+          AGGTTAGATAATGGAGTGTGCTATTATGCATAATCATCTGTTTTTTTGAAATAAGGGACT
                      ____________________________________________________________
consensus             AGGTTAGATAATGGAGTGTGCTATTATGCATAATCATCTGTTTTTTTGAAATAAGGGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035P17-           TGAGGATTTTCTGATGCATTGTTGTAGAGTTTTACTCATTGAGAGAGGAGCTGTTGTT  
rJMFF003H12+          TGAGGATTTTCTGATGCATTGTTGTAGAGTTTTACTCATTGAGAGAGGAGCTGTTGTTCT
rJMFF042N01+          TGAGGATTTTTTGATGCATTGTTGTAGAGTTTTACTCATTGAGAGAGGAGCTGTTGTTTT
                      ____________________________________________________________
consensus             TGAGGATTTTCTGATGCATTGTTGTAGAGTTTTACTCATTGAGAGAGGAGCTGTTGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003H12+          CC                                                          
rJMFF042N01+          CCCATTAATGGTGGCATGTTATTATTATCAAGCTCAAGCATTTGAGACCTAAAGATGCCA
                      ____________________________________________________________
consensus             CCCATTAATGGTGGCATGTTATTATTATCAAGCTCAAGCATTTGAGACCTAAAGATGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042N01+          AAATCAAATTTAATAAGAGGGATAAGGCTCAAGTAGGCCCTTCAATTAAAAAAAAAAAAG
                      ____________________________________________________________
consensus             AAATCAAATTTAATAAGAGGGATAAGGCTCAAGTAGGCCCTTCAATTAAAAAAAAAAAAG