Contig 008311:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012N03Sequence595008311 (10)ref|XP_009787427.1|5e-07PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop761008311 (10)ref|XP_009787427.1|3e-58PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop
JMFF042G12Sequence640008311 (10)ref|XP_009787427.1|9e-44PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop632008311 (10)ref|XP_009787427.1|5e-61PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop
JMSF033O18Sequence657008311 (10)ref|XP_009787427.1|2e-48PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop710008311 (10)ref|XP_006356200.1|1e-88PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop
JMSF041O14Sequence493008311 (10)ref|XP_006356200.1|4e-29PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop628008311 (10)ref|XP_006356200.1|3e-64PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop
JMSF044M06Sequence784008311 (10)ref|XP_009787427.1|4e-79PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop732008311 (10)ref|XP_006356200.1|1e-88PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chlorop

Alignment

This contig is upended


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JMSF033O18-                                    ATCGTGTCTAGCATTTCCGCTCTCGTCGTCTGTGA
JMFF042G12-                             CACCTTTATCGTGTCTAGCATTTCCGCTCTCGTCGTCTGTGA
JMFF012N03-                             CACCTTTATCGTGTCTAGCATTTCCGCTCTCGTCGTCTGTGA
JMSF044M06-                        GAGTGCACCTTTATCGTGTCTAGCATTTCCGCTCTCGTCGTCTGTGA
                      ____________________________________________________________
consensus                          GAGTGCACCTTTATCGTGTCTAGCATTTCCGCTCTCGTCGTCTGTGA
 
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JMSF033O18-           GCAGAGCTTCAAACTTTACCAGAAAATTTGCAGCACAAACTCTCCAATGGCTGCATGCAG
JMFF042G12-           GCAGAGCTTCAAACTTTACCAGAAAATTTGCAGCACAAACTCTCCAATGGCTGCATGCAG
JMFF012N03-           GCAGAGCTTCAAACTTTACCAGAAAATTTGCAGCACAAACTCTCCAATGGCTGCATGCAG
JMSF044M06-           GCAGAGCTTCAAACTTTACCAGAAAATTTGCAGCACAAACTCTCCAATGGCTGCATGCAG
                      ____________________________________________________________
consensus             GCAGAGCTTCAAACTTTACCAGAAAATTTGCAGCACAAACTCTCCAATGGCTGCATGCAG
 
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JMSF033O18-           TTTAGGGGCTTCAAGTTTTAAGATAAGAAATCTAAATTTGGGTTATGGTGGACCCAAAGT
JMFF042G12-           TTTAGGGGCTTCAAGTTTTAAGATAAGAAATCTAAATTTGGGTTATGGTGGACCCAAAGT
JMSF041O14-                                      AAATCTAAATTTGGGTTATGGTGGACCCAAAGT
JMFF012N03-           TTTAGGGGCTTCAAGTTTTAAGATAAGAAATCTAAATTTGGGTTATGGTGGACCCAAAGT
JMSF044M06-           TTTAGGGGCTTCAAGTTTTAAGATAAGAAATCTAAATTTGGGTTATGGTGGACCCAAAGT
                      ____________________________________________________________
consensus             TTTAGGGGCTTCAAGTTTTAAGATAAGAAATCTAAATTTGGGTTATGGTGGACCCAAAGT
 
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JMSF033O18-           GACTAGATCGTCTGGTGTAAAACCAAGGTCTTTGGTTGGGTATAATGGTCTGGTCATATC
JMFF042G12-           GACTAGATCGTCTGGTGTAAAACCAAGGTCTTTGGTTGGGTATAATGGTCTGGTCATATC
JMSF041O14-           GACTAGATCGTCTGGTGTAAAACCAAGGTCTTTGGTTGGGTATAATGGTCTGGTCATATC
JMFF012N03-           GACTAGATCGTCTGGTGTAAAACCAAGGTCTTTGGTTGGGTATAATGGTCTGGTCATATC
JMSF044M06-           GACTAGATCGTCTGGTGTAAAACCAAGGTCTTTGGTTGGGTATAATGGTCTGGTCATATC
                      ____________________________________________________________
consensus             GACTAGATCGTCTGGTGTAAAACCAAGGTCTTTGGTTGGGTATAATGGTCTGGTCATATC
 
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JMSF033O18-           CCCCAATACAAAGAAACCATTTATTAGGCGGCGGTGTTTGGGCTCTGAAGTTCAATCTAG
JMFF042G12-           CCCCAATACAAAGAAACCATTTATTAGGCGGCGGTGTTTGGGCTCTGAAGTTCAATCTAG
JMSF041O14-           CCCCAATACAAAGAAACCATTTATTANGCGGCGGTGTTTGGGCTCTGAAGTTCAATCTAG
JMFF012N03-           CCCCAATACAAAGAAACCATTTATTAGGCGGCGGTGTTTGGGCTCTGAAGTTCAAT----
JMSF044M06-           CCCCAATACAAAGAAACCATTTATTAGGCGGCGGTGTTTGGGCTCTGAAGTTCAATCTAG
                      ____________________________________________________________
consensus             CCCCAATACAAAGAAACCATTTATTAGGCGGCGGTGTTTGGGCTCTGAAGTTCAATCTAG
 
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JMSF033O18-           TTCAAGTTCAGATGAAAGTCTCGAGAAGGCCATTTCTTCTGATGGAGCTATCCCACTGGT
JMFF042G12-           TTCAAGTTCAGATGAAAGTCTCGAGAAGGCCATTTCTTCTGATGGAGCTATCCCACTGGT
JMSF041O14-           TTCAAGTTCANATGAAAGTCTCGAGAAGGCCATTTCTTCTGATGGAGCTATCCCACTGGT
JMFF012N03-           TTCAAGTTCAGATGAAAGTCTCGAGAAGGCCATTTCTTCTGATGGAGCTATCCCACTGGT
JMSF044M06-           TTCAAGTTCAGATGAAAGTCTCGAGAAGGCCATTTCTTCTGATGGAGCTATCCCACTGGT
rJMSF033O18+                                                 TGATGGAGCTATCCCACTGGT
rJMSF044M06+                                                 TGATGGAGCTATCCCACTGGT
                      ____________________________________________________________
consensus             TTCAAGTTCAGATGAAAGTCTCGAGAAGGCCATTTCTTCTGATGGAGCTATCCCACTGGT
 
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JMSF033O18-           TCCAAATTCAAATGATGTTGAATCATTCCTGGCAGAATTATGTGATACAACCTCAATTGC
JMFF042G12-           TCCAAATTCAAATGATGTTGAATCATTCCTGGCAGAATTATGTGATACAACCTCAATTGC
JMSF041O14-           TCCAAATTCAAATGATGTTGAATCATTCCTGGCAGAATTATGTGATACAACCTCAATTGC
JMFF012N03-           TCCAAATTCAAATGATGT                                          
JMSF044M06-           TCCAAATTCAAATGATGTTGAATCATTCCTGGCAGAATTATGTGATACAACCTCAATTGC
rJMSF033O18+          TCCAAATTCAAATGATGTTGAATCATTCCTGGCAGAATTATGTGATACAACCTCAATTGC
rJMSF044M06+          TCCAAATTCAAATGATGTTGAATCATTCCTGGCAGAATTATGTGATACAACCTCAATTGC
                      ____________________________________________________________
consensus             TCCAAATTCAAATGATGTTGAATCATTCCTGGCAGAATTATGTGATACAACCTCAATTGC
 
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JMSF033O18-           AGAAATTGAACTAAAACTTGGTGATTTCCAGTTATATGTGATGAGGAACTTAAATGGTCA
JMFF042G12-           AGAAATTGAACTAAAACTTGGTGATTTCCAGTTATATGTGATGAGGAACTTAAATGGTCA
JMSF041O14-           ANAAATTGAACTAAAACTTGGTGATTTCCAGTTATATGTGATGAGGAACTTAAATGGTCA
JMSF044M06-           AGAAATTGAACTAAAACTTGGTGATTTCCAGTTATATGTGATGAGGAACTTAAATGGTCA
rJMSF033O18+          AGAAATTGAACTAAAACTTGGTGATTTCCAGTTATATGTGATGAGGAACTTAAATGGTCA
rJMSF044M06+          AGAAATTGAACTAAAACTTGGTGATTTCCAGTTATATGTGATGAGGAACTTAAATGGTCA
rJMSF041O14+                                          TATATGTGATGAGGAACTTAAATGGTCA
rJMFF012N03+                          CTTGGTGATTTCCAGTTATATGTGATGAGGAACTTAAATGGTCA
                      ____________________________________________________________
consensus             AGAAATTGAACTAAAACTTGGTGATTTCCAGTTATATGTGATGAGGAACTTAAATGGTCA
 
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JMSF033O18-           CATTACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
JMFF042G12-           CATTACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
JMSF041O14-           CATTACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
JMSF044M06-           CATTACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
rJMSF033O18+          CATTACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
rJMSF044M06+          CATTACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
rJMSF041O14+          CA-TACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
rJMFF012N03+          CATTACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
rJMFF042G12+                                     TGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
                      ____________________________________________________________
consensus             CATTACAACTTCGCATCCTCCAATTTCTGTTCCCGTTAGTTCCGCCCAAAACTTCGAGAT
 
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JMSF033O18-           G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTAGCCATCACGAAATTAGCATCAT
JMFF042G12-           G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTAGCCATCACGAAATTAGCATCAT
JMSF041O14-           G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTGGCCATCACGAAATTANCATCAT
JMSF044M06-           G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTAGCCATCACGAAATTAGCATCAT
rJMSF033O18+          G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTAGCCATCACGAAATTAGCATCAT
rJMSF044M06+          G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTAGCCATCACGAAATTAGCATCAT
rJMSF041O14+          G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTGGCCATCACGAAATTAGCATCAT
rJMFF012N03+          GCCCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTAGCCATCACGAAATTAGCATCAT
rJMFF042G12+          G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTAGCCATCACGAAATTAGCATCAT
                      ____________________________________________________________
consensus             G-CCTAGTTCAAATGGCCCTGCTCCTGCACCATCTCTAGCCATCACGAAATTAGCATCAT
 
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JMSF033O18-           CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAATTCGAT
JMFF042G12-           CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAAT     
JMSF041O14-           CAGATGGGATTGGGACATTGCTTGATAAANCTGCAGATGAA                   
JMSF044M06-           CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAATTCGAT
rJMSF033O18+          CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAATTCGAT
rJMSF044M06+          CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAATTCGAT
rJMSF041O14+          CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAATTCGAT
rJMFF012N03+          CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAATTCGAT
rJMFF042G12+          CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAATTCGAT
                      ____________________________________________________________
consensus             CAGATGGGATTGGGACATTGCTTGATAAAGCTGCAGATGAAGGTTTAGTGATAATTCGAT
 
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JMSF033O18-           CCCCTAGGGTTGGCTTTTTCAG                                      
JMSF044M06-           CCCCTAGGGTTGGCTTTTTCAGGAGATCTAGGACTATAAAGGGAAAGCGTGCACCTCCAT
rJMSF033O18+          CCCCTAGGGTTGGCTTTTTCAGGAGATCTAGGACTATAAAGGGAAAGCGTGCACCTCCAT
rJMSF044M06+          CCCCTAGGGTTGGCTTTTTCAGGAGATCTAGGACTATAAAGGGAAAGCGTGCACCTCCAT
rJMSF041O14+          CCCCTAGGGTTGGCTTTTTCAGGAGATCTAGGACTATAAAGGGAAAGCGTGCACCTCCAT
rJMFF012N03+          CCCCTAGGGTTGGCTTTTTCAGGAGATCTAGGACTATAAAGGGAAAGCGTGCACCTCCAT
rJMFF042G12+          CCCCTAGGGTTGGCTTTTTCAGGAGATCTAGGACTATAAAGGGAAAGCGTGCACCTCCAT
                      ____________________________________________________________
consensus             CCCCTAGGGTTGGCTTTTTCAGGAGATCTAGGACTATAAAGGGAAAGCGTGCACCTCCAT
 
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JMSF044M06-           CTTGTAAAGAGAAGCAACAAGTGAAGGAAGGCCAAGTAATCTGCTACATTGAACAACTTG
rJMSF033O18+          CTTGTAAAGAGAAGCAACAAGTGAAGGAAGGCCAAGTAATCTGCTACATTGAACAACTTG
rJMSF044M06+          CTTGTAAAGAGAAGCAACAAGTGAAGGAAGGCCAAGTAATCTGCTACATTGAACAACTTG
rJMSF041O14+          CTTGTAAAGAGAAGCAACAAGTGAAGGAAGGCCAAGTAATCTGCTACATTGAACAACTTG
rJMFF012N03+          CTTGTAAAGAGAAGCAACAAGTGAAGGAAGGCCAAGTAATCTGCTACATTGAACAACTTG
rJMFF042G12+          CTTGTAAAGAGAAGCAACAAGTGAAGGAAGGCCAAGTAATCTGCTACATTGAACAACTTG
                      ____________________________________________________________
consensus             CTTGTAAAGAGAAGCAACAAGTGAAGGAAGGCCAAGTAATCTGCTACATTGAACAACTTG
 
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JMSF044M06-           GCGGGGAGCTCCCTGTTG                                          
rJMSF033O18+          GCGGGGAGCTCCCTGTTGAGTCTGAAGTATCCGGGGAGGTCATCAAAGTATTGGTAGATG
rJMSF044M06+          GCGGGGAGCTCCCTGTTGAGTCTGAAGTATCCGGGGAGGTCATCAAAGTATTGGTAGATG
rJMSF041O14+          GCGGGGAGCTCCCTGTTGAGTCTGAAGTATCCGGGGAGGTCATCAAAGTATTGGTAGATG
rJMFF012N03+          GCGGGGAGCTCCCTGTTGAGTCTGAAGTATCCGGGGAGGTCATCAAAGTATTGGTAGATG
rJMFF042G12+          GCGGGGAGCTCCCTGTTGAGTCTGAAGTATCCGGGGAGGTCATCAAAGTATTGGTAGATG
                      ____________________________________________________________
consensus             GCGGGGAGCTCCCTGTTGAGTCTGAAGTATCCGGGGAGGTCATCAAAGTATTGGTAGATG
 
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rJMSF033O18+          ATGGAGCTCCAGTTGGATACGGTGATCCTATAATCTCAATTCTTCCTTCTTTCCCTGGCA
rJMSF044M06+          ATGGAGCTCCAGTTGGATACGGTGATCCTATAATCTCAATTCTTCCTTCTTTCCCTGGCA
rJMSF041O14+          ATGGAGCTCCAGTTGGATACGGTGATCCTATAATCTCAATTCTTCCTTCTTTCCCTGGCA
rJMFF012N03+          ATGGAGCTCCAGTTGGATACGGTGATCCTATAATCTCAATTCTTCCTTCTTTCCCTGGCA
rJMFF042G12+          ATGGAGCTCCAGTTGGATACGGTGATCCTATAATCTCAATTCTTCCTTCTTTCCCTGGCA
                      ____________________________________________________________
consensus             ATGGAGCTCCAGTTGGATACGGTGATCCTATAATCTCAATTCTTCCTTCTTTCCCTGGCA
 
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rJMSF033O18+          TTAAAATTTAAAAGCCTCCGCAGATGAAGTGAGTTCAGGCATGGAGATCAAAGTTTTCTG
rJMSF044M06+          TTAAAATTTAAAAGCCTCCGCAGATGAAGTGAGTTCAGGCATGGAGATCAAAGTTTTCTG
rJMSF041O14+          TTAAAATTTAAAAGCCTCCGCAGATGAAGTGAGTTCAGGCATGGAGATCAAAGTTTTCTG
rJMFF012N03+          TTAAAATTTAAAAGCCTCCGCAGATGAAGTGAGTTCAGGCATGGAGATCAAAGTTTTCTG
rJMFF042G12+          TTAAAATTTAAAAGCCTCCGCAGATGAAGTGAGTTCAGGCATGGAGATCAAAGTTTTCTG
                      ____________________________________________________________
consensus             TTAAAATTTAAAAGCCTCCGCAGATGAAGTGAGTTCAGGCATGGAGATCAAAGTTTTCTG
 
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rJMSF033O18+          GCGTTGTAAAAAGCGGTTTTTTCCCATATGGATTATGAGATCACTGTTTTGCAGATTATG
rJMSF044M06+          GCGTTGTAAAAAGCGGTTTTTTCCCATATGGATTATGAGATCACTGTTTTGCAGATTATG
rJMSF041O14+          GCGTTGTAAAAAGCGGTTTTTTCCCATATGGATTATGAGATCACTGTTTTGCAGATTATG
rJMFF012N03+          GCGTTGTAAAAAGCGGTTTTTTCCCATATGGATTATGAGATCACTGTTTTGCAGATTATG
rJMFF042G12+          GCGTTGTAAAAAGCGGTTTTTTCCCATATGGATTATGAGATCACTGTTTTGCAGATTATG
                      ____________________________________________________________
consensus             GCGTTGTAAAAAGCGGTTTTTTCCCATATGGATTATGAGATCACTGTTTTGCAGATTATG
 
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rJMSF033O18+          ACATAACAAATGCTGCCTATGAC                                     
rJMSF044M06+          ACATAACAAATGCTGCCTATGACATGCATTGTGTTATTTTGAGGCTTCTCAT        
rJMSF041O14+          ACATAACAAATGCTGCCTATGACATGCATTGTATTATTTTGAGGCTTCTCAT        
rJMFF012N03+          ACATAACAAATGCTGCCTATGACATGCATTGTATTATTTTGAGGCTTCTCATTAACTCAT
rJMFF042G12+          ACATAACAAATGCTGCCTATGACATGCATTGTATTATTTTGAGGCTTCTCATTAACTCAT
                      ____________________________________________________________
consensus             ACATAACAAATGCTGCCTATGACATGCATTGTATTATTTTGAGGCTTCTCATTAACTCAT
 
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rJMFF012N03+          TTTGGTTTATAATCCAA                                           
rJMFF042G12+          TTTGGTTTATAATCCAACTGCAGAGTTTATAGTAAAAAAAAAAAAAAAACTCTCCAGGGG
                      ____________________________________________________________
consensus             TTTGGTTTATAATCCAACTGCAGAGTTTATAGTAAAAAAAAAAAAAAAACTCTCCAGGGG