| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041F09 | Sequence | 657 | 008303 (8) | emb|CDP01762.1| | 1e-99 | unnamed protein product [Coffea canephora] | 637 | 008303 (8) | emb|CDP01762.1| | 5e-105 | unnamed protein product [Coffea canephora] |
| JMSF001G23 | Sequence | 190 | 008303 (8) | 778 | 008303 (8) | emb|CDP01762.1| | 3e-143 | unnamed protein product [Coffea canephora] | |||
| JMSF018I10 | Sequence | 546 | 008303 (8) | emb|CDP01762.1| | 6e-83 | unnamed protein product [Coffea canephora] | 768 | 008303 (8) | ref|XP_002532478.1| | 9e-104 | translation initiation factor, putative [Ricinus communis] gb|EEF29902.1| transl |
| JMSF038G22 | Sequence | 667 | 008303 (8) | emb|CDP01762.1| | 2e-114 | unnamed protein product [Coffea canephora] | 816 | 008303 (8) | emb|CDP01762.1| | 3e-159 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF001G23- ACATCACTAGTCTTCGTCGCTCCACCGTTACCGACGCTGCCGCC
JMSF018I10- GGGAACATCACTAGTCTTCGTCGCTCCACCGTTACCGACGCTGCCGCC
JMFF041F09- ACATCACTAGTCTTCGTCGCTCCACCGTTACCGACGCTGCCGCC
JMSF038G22- ACATCACTAGTCTTCGTCGCTCCACCGTTACCGACGCTGCCGCC
____________________________________________________________
consensus GGGAACATCACTAGTCTTCGTCGCTCCACCGTTACCGACGCTGCCGCC
. : . : . : . : . : . :
JMSF001G23- GCCACCACCACCACCGCTACCGTTCGGCCTGTTTAGGAATTTCAGGCACTCTCTGAGAAA
JMSF018I10- GCCACCACCACCACCGCTACCGTTCGGCCTGTTTAGGAATTTCAGGCACTCTCTGAGAAA
JMFF041F09- GCCACCACCACCACCGCTACCGTTCGGCCTGTTTAGGAATTTCAGGCACTCTCTGAGAAA
JMSF038G22- GCCACCACCACCACCGCTACCGTTCGGCCTGTTTAGGAATTTCAGGCACTCTCTGAGAAA
____________________________________________________________
consensus GCCACCACCACCACCGCTACCGTTCGGCCTGTTTAGGAATTTCAGGCACTCTCTGAGAAA
. : . : . : . : . : . :
JMSF001G23- GCGATTACACTGAAAAAGTCCTTTTTGACAAGGAAAAAGCTGCTCGTTTTGTCCTTACCA
JMSF018I10- GCGATTACACTGAAAAAGTCCTTTTTGACAAGGAAAAAGCTGCTCGTTTTGTCCTTACCA
JMFF041F09- GCGATTACACTGAAAAAGTCCTTTTTGACAAGGAAAAAGCTGCTCGTTTTGTCCTTACCA
JMSF038G22- GCGATTACACTGAAAAAGTCCTTTTTGACAAGGAAAAAGCTGCTCGTTTTGTCCTTACCA
____________________________________________________________
consensus GCGATTACACTGAAAAAGTCCTTTTTGACAAGGAAAAAGCTGCTCGTTTTGTCCTTACCA
. : . : . : . : . : . :
JMSF001G23- TGGCAACTAGGT
JMSF018I10- TGGCAACTAGGTTGCAGTTCGAGAATTCATGTGAAATTGGGGTCTTCTCCAAGCTGACAA
JMFF041F09- TGGCAACTAGG-TGCAGTTCGAGAATTCATGTGAAATTGGGGTCTTCTCCAAGCTGACAA
JMSF038G22- TGGCAACTAGGTTGCAGTTCGAGAATTCATGTGAAATTGGGGTCTTCTCCAAGCTGACAA
rJMSF038G22+ AGCTGACAA
____________________________________________________________
consensus TGGCAACTAGGTTGCAGTTCGAGAATTCATGTGAAATTGGGGTCTTCTCCAAGCTGACAA
. : . : . : . : . : . :
JMSF018I10- ACGCTTACTGCTTGGTCGCAATTGGTGGATCAGAAAACTTTTACAGCACGTTT-GAAGCT
JMFF041F09- ACGCTTACTGCTTGGTCACAATTGGTGGATCAGAAAACTTTTACAGCACGTTT-GAAGCT
JMSF038G22- ACGCTTACTGCTTGGTCGCAATTGGTGGATCAGAAAACTTTTACAGCACGTTT-GAAGCT
rJMSF038G22+ ACGCTTACTGCTTGGTCGCAATTGGTGGATCAGAAAACTTTTACAGCACGTTT-GAAGCT
rJMSF018I10+ TTGAAGCT
rJMSF001G23+ AAAACTTTTACAGCACGTTTGNAAGCT
____________________________________________________________
consensus ACGCTTACTGCTTGGTCGCAATTGGTGGATCAGAAAACTTTTACAGCACGTTT-GAAGCT
. : . : . : . : . : . :
JMSF018I10- GAGTTAGCAGATGCCATTCCAGTTATTAAAACCTCCATAGGTGGAACCCGGATAGTTGGA
JMFF041F09- GAGTTAGCAGATGCCATTCCAGTTATTAAAACCTCCATAGGTGGAACCCGGATAGTTGGA
JMSF038G22- GAGTTAGCAGATGCCATTCCAGTTATTAAAACCTCCATAGGTGGAACCCGGATAGTTGGA
rJMSF038G22+ GAGTTAGCAGATGCCATTCCAGTTATTAAAACCTCCATAGGTGGAACCCGGATAGTTGGA
rJMSF018I10+ GAGTTAGCAGATGCCATTCCAGTTATTAAAACCTCCATAGGTGGAACCCGGATAGTTGGA
rJMSF001G23+ GAGTTAGCAGATGCCATTCCAGTTATTAAAACCTCCATAGGTGGAACCCGGATAGTTGGA
____________________________________________________________
consensus GAGTTAGCAGATGCCATTCCAGTTATTAAAACCTCCATAGGTGGAACCCGGATAGTTGGA
. : . : . : . : . : . :
JMSF018I10- CGGCTTTGTGCTGGAAACAAAAATGGTCTTATTCTGCCTCATACTACTACTGACCAAGAG
JMFF041F09- CGGCTTTGTGCTGGAAACAAAAATGGTCTTATTCTGCCTCATACTACTACTGACCAAGAG
JMSF038G22- CGGCTTTGTGCTGGAAACAAAAATGGTCTTATTCTGCCTCATACTACTACTGACCAAGAG
rJMSF038G22+ CGGCTTTGTGCTGGAAACAAAAATGGTCTTATTCTGCCTCATACTACTACTGACCAAGAG
rJMSF018I10+ CGGCTTTGTGCTGGAAACAAAAATGGTCTTATTCTGCCTCATACTACTACTGACCAAGAG
rJMSF001G23+ CGGCTTTGTGCTGGAAACAAAAATGGTCTTATTCTGCCTCATACTACTACTGACCAAGAG
____________________________________________________________
consensus CGGCTTTGTGCTGGAAACAAAAATGGTCTTATTCTGCCTCATACTACTACTGACCAAGAG
. : . : . : . : . : . :
JMSF018I10- CTTCAACACTTGAGAAACAGTTTGCCAGATAGTGTTGTTGTTCAGCGTGCTGATGAGAGG
JMFF041F09- CTTCAACACTTGAGAAACAGTTTGCCAGATAGTGTTGTTGTTCAGCGTGCTGATGAGAGG
JMSF038G22- CTTCAACACTTGAGAAACAGTTTGCCAGATAGTGTTGTTGTTCAGCGTGCTGATGAGAGG
rJMSF038G22+ CTTCAACACTTGAGAAACAGTTTGCCAGATAGTGTTGTTGTTCAGCGTGCTGATGAGAGG
rJMSF018I10+ CTTCAACACTTGAGAAACAGTTTGCCAGATAGTGTTGTTGTTCAGCGTGCTGATGAGAGG
rJMSF001G23+ CTTCAACACTTGAGAAACAGTTTGCCAGATAGTGTTGTTGTTCAGCGTGCTGATGAGAGG
rJMFF041F09+ GCCAGATAGTGTTGTTGTTCAGCGTGCTGATGAGAGG
____________________________________________________________
consensus CTTCAACACTTGAGAAACAGTTTGCCAGATAGTGTTGTTGTTCAGCGTGCTGATGAGAGG
. : . : . : . : . : . :
JMSF018I10- CTATCCGCTTTGGGAAACTGCATTGCTTGCAATGACCATGTTGCTCTTACGCACACTGAT
JMFF041F09- CTATCCGCTTTGGGAAACTGCATTGCTTGCAATGACCATGTTGCTCTTACGCACACTGAT
JMSF038G22- CTATCCGCTTTGGGAAACTGCATTGCTTGCAATGACCATGTTGCTCTTACGCACACTGAT
rJMSF038G22+ CTATCCGCTTTGGGAAACTGCATTGCTTGCAATGACCATGTTGCTCTTACGCACACTGAT
rJMSF018I10+ CTATCCGCTTTGGGAAACTGCATTGCTTGCAATGACCATGTTGCTCTTACGCACACTGAT
rJMSF001G23+ CTATCCGCTTTGGGAAACTGCATTGCTTGCAATGACCATGTTGCTCTTACGCACACTGAT
rJMFF041F09+ CTATCCGCTTTGGGAAACTGCATTGCTTGCAATGACCATGTTGCTCTTACGCACACTGAT
____________________________________________________________
consensus CTATCCGCTTTGGGAAACTGCATTGCTTGCAATGACCATGTTGCTCTTACGCACACTGAT
. : . : . : . : . : . :
JMSF018I10- CTTGATAGGGAAACTGAAG
JMFF041F09- CTTGATAGGGAAACTGAAGAGTTGATTGCGGATGTTCTCGGAGTTGAAGTCTTTAGGCAG
JMSF038G22- CTTGATAGGGAAACTGAAGAGTTGATTGCGGATGTTCTCGGAGTTGAAGTCTTTAGGCAG
rJMSF038G22+ CTTGATAGGGAAACTGAAGAGTTGATTGCGGATGTTCTCGGAGTTGAAGTCTTTAGGCAG
rJMSF018I10+ CTTGATAGGGAAACTGAAGAGTTGATTGCGGATGTTCTCGGAGTTGAAGTCTTTAGGCAG
rJMSF001G23+ CTTGATAGGGAAACTGAAGAGTTGATTGCGGATGTTCTCGGAGTTGAAGTCTTTAGGCAG
rJMFF041F09+ CTTGATAGGGAAACTGAAGAGTTGATTGCGGATGTTCTCGGAGTTGAAGTCTTTAGGCAG
____________________________________________________________
consensus CTTGATAGGGAAACTGAAGAGTTGATTGCGGATGTTCTCGGAGTTGAAGTCTTTAGGCAG
. : . : . : . : . : . :
JMFF041F09- ACAATAGCTGGGAATATACTTGTTGGCAGCTATTGTGCTTTTTCT-ACAGAGGTGGCTTG
JMSF038G22- ACAATAGCTGGGAATATACTTGTTGGCAGCTATTGTGCTTTTTCTAACAGAGGTGGCTTG
rJMSF038G22+ ACAATAGCTGGGAATATACTTGTTGGCAGCTATTGTGCTTTTTCTAACAGAGGTGGCTTG
rJMSF018I10+ ACAATAGCTGGGAATATACTTGTT--CAGCTATTGTGCTTTTTCTAACAGAGGTGGCTTG
rJMSF001G23+ ACAATAGCTGGGAATATACTTGTTGGCAGCTATTGTGCTTTTTCTAACAGAGGTGGCTTG
rJMFF041F09+ ACAATAGCTGGGAATATACTTGTTGGCAGCTATTGTGCTTTTTCTAACAGAGGTGGCTTG
____________________________________________________________
consensus ACAATAGCTGGGAATATACTTGTTGGCAGCTATTGTGCTTTTTCTAACAGAGGTGGCTTG
. : . : . : . : . : . :
JMFF041F09- GTGCATCCTCATA
JMSF038G22- GTGCATCCTCATACATCCGTC
rJMSF038G22+ GTGCATCCTCATACATCCGTCGAAGACTTGGATGAACTTTCGACGCTCCTCCAGGTTCCT
rJMSF018I10+ GTGCATCCTCATACATCCGTCGAAGACTTGGATGAACTTTCGACGCTCCTCCAGGTTCCT
rJMSF001G23+ GTGCATCCTCATACATCCGTCGAAGACTTGGATGAACTTTCGACGCTCCTCCAGGTTCCT
rJMFF041F09+ GTGCATCCTCATACATCCGTCGAAGACTTGGATGAACTTTCGACGCTCCTCCAGGTTCCT
____________________________________________________________
consensus GTGCATCCTCATACATCCGTCGAAGACTTGGATGAACTTTCGACGCTCCTCCAGGTTCCT
. : . : . : . : . : . :
rJMSF038G22+ CTGGTGGCCGGAACTGTGAACCGAGGTAGTGACGTGATTGCTGCTGGATTGACAGTCAAC
rJMSF018I10+ CTGGTGGCCGGAACTGTGAACCGAGGTAGTGACGTGATTGCTGCTGGATTGACAGTCAAC
rJMSF001G23+ CTGGTGGCCGGAACTGTGAACCGAGGTAGTGACGTGATTGCTGCTGGATTGACAGTCAAC
rJMFF041F09+ CTGGTGGCCGGAACTGTGAACCGAGGTAGTGACGTGATTGCTGCTGGATTGACAGTCAAC
____________________________________________________________
consensus CTGGTGGCCGGAACTGTGAACCGAGGTAGTGACGTGATTGCTGCTGGATTGACAGTCAAC
. : . : . : . : . : . :
rJMSF038G22+ GACTGGACCGCGTTTTGTGGCTCTGACACTACCGCAACGGAGTTGTCTGTCATCGAGAGC
rJMSF018I10+ GACTGGACCGCGTTTTGTGGCTCTGACACTACCGCAACGGAGTTGTCTGTCATCGAGAGC
rJMSF001G23+ GACTGGACCGCGTTTTGTGGCTCTGACACTACCGCAACGGAGTTGTCTGTCATCGAGAGC
rJMFF041F09+ GACTGGACCGCGTTTTGTGGCTCTGACACTACCGCAACGGAGTTGTCTGTCATCGAGAGC
____________________________________________________________
consensus GACTGGACCGCGTTTTGTGGCTCTGACACTACCGCAACGGAGTTGTCTGTCATCGAGAGC
. : . : . : . : . : . :
rJMSF038G22+ GTTTTCAAGCTGAGAGAGGCTCAGCCAAGCGCTATCGTCGATGAAATGCGGAAATCGTTG
rJMSF018I10+ GTTTTCAAGCTGAGAGAGGCTCAGCCAAGCGCTATCGTCGATGAAATGCGGAAATCGTTG
rJMSF001G23+ GTTTTCAAGCTGAGAGAGGCTCAGCCAAGCGCTATCGTCGATGAAATGCGGAAATCGTTG
rJMFF041F09+ GTTTTCAAGCTGAGAGAGGCTCAGCCAAGCGCTATCGTCGATGAAATGCGGAAATCGTTG
____________________________________________________________
consensus GTTTTCAAGCTGAGAGAGGCTCAGCCAAGCGCTATCGTCGATGAAATGCGGAAATCGTTG
. : . : . : . : . : . :
rJMSF038G22+ ATCGACAGCTATGTTTAAGTTCTGTGCTTCACATCCACATAATGTAAGTTTTGTGCTGAA
rJMSF018I10+ ATCGACAGCTATGTTTAAGTTCTGTGCTTCACATCCACATAATGTAAGTTTTGTGCTGAA
rJMSF001G23+ ATCGACAGCTATGTTTAAGTTCTGTGCTTCACATCCACATAATGTAAGTTTTGTGCTGAA
rJMFF041F09+ ATCGACAGCTATGTTTAAGTTCTGTGCTTCACATCCACATAATGTAAGTTTTGTGCTGAA
____________________________________________________________
consensus ATCGACAGCTATGTTTAAGTTCTGTGCTTCACATCCACATAATGTAAGTTTTGTGCTGAA
. : . : . : . : . : . :
rJMSF038G22+ AATTCACATAATGTGTGTTGAAAATTTTAAAGCTCATAACTAAATTGCTTTGCTTTTTAT
rJMSF018I10+ AATTCACATAATGTGTGTTGAAAATTTTAAAGCTCATAACTAAATTGCTTTGCTTTTTAT
rJMSF001G23+ AATTCACATAATGTGTGTTGAAAATTTTAAAGCTCATAACTAAATTGCTTTGCTTTTTAT
rJMFF041F09+ AATTCACATAATGTGTGTTGAAAATTTTAAAGCTCATAACTAAATTGCTTTGCTTTTTAT
____________________________________________________________
consensus AATTCACATAATGTGTGTTGAAAATTTTAAAGCTCATAACTAAATTGCTTTGCTTTTTAT
. : . : . : . : . : . :
rJMSF038G22+ GTGCACAAGTACTCCTCCAAGAATGATT
rJMSF018I10+ GTGCACAAGTACTCCTCCAAGAATGATT
rJMSF001G23+ GTGCACAAGTACTCCTCCAAGAATGATT
rJMFF041F09+ GTGCACAAGTACTCCTCCAAGAATGATTTGCATATTTATAATATCAAATATAAACAAGTT
____________________________________________________________
consensus GTGCACAAGTACTCCTCCAAGAATGATTTGCATATTTATAATATCAAATATAAACAAGTT