Contig 008300:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040C05Sequence424008300 (5)ref|XP_004244048.1|2e-13PREDICTED: probable WRKY transcription factor 20 [Solanum lycopersicum]507008300 (5)ref|XP_004244048.1|5e-13PREDICTED: probable WRKY transcription factor 20 [Solanum lycopersicum]
JMSF010I24Sequence250008300 (5)ref|XP_004244048.1|9e-05PREDICTED: probable WRKY transcription factor 20 [Solanum lycopersicum]731005689 (4)ref|XP_009591629.1|1e-68PREDICTED: probable WRKY transcription factor 20 isoform X3 [Nicotiana tomentos
JMSF011O02Sequence317008300 (5)ref|XP_006346162.1|6e-20PREDICTED: probable WRKY transcription factor 20-like [Solanum tuberosum]705005689 (4)ref|XP_009591629.1|1e-52PREDICTED: probable WRKY transcription factor 20 isoform X3 [Nicotiana tomentos
JMSF019G14Sequence595008300 (5)ref|XP_006346162.1|9e-44PREDICTED: probable WRKY transcription factor 20-like [Solanum tuberosum]733005689 (4)ref|XP_009591629.1|2e-62PREDICTED: probable WRKY transcription factor 20 isoform X3 [Nicotiana tomentos

Alignment

This contig is upended


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JMSF019G14+                                               GATGTAGGAATTATTGAAGACTCA
                      ____________________________________________________________
consensus                                                 GATGTAGGAATTATTGAAGACTCA
 
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JMSF019G14+           AGCAAAGATGATGGTGCTAATGACTGAGGAAGGCATTGATCTTGAGATTGCTTCAGAGGT
                      ____________________________________________________________
consensus             AGCAAAGATGATGGTGCTAATGACTGAGGAAGGCATTGATCTTGAGATTGCTTCAGAGGT
 
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JMSF019G14+           TCATTTTGCTTGGGACCTATTGATGACGATTCTGATGTAGAGTAAGAACCAACAGGGAAT
                      ____________________________________________________________
consensus             TCATTTTGCTTGGGACCTATTGATGACGATTCTGATGTAGAGTAAGAACCAACAGGGAAT
 
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JMSF019G14+           TCAAACTCAAAGTTGTTGGATTTACTTTCAATATAAATGTTGCTTCTGGGAAATGAAAAT
                      ____________________________________________________________
consensus             TCAAACTCAAAGTTGTTGGATTTACTTTCAATATAAATGTTGCTTCTGGGAAATGAAAAT
 
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JMSF019G14+           CCACCAGTGCTGCCAAAGCCTTGCATTGTTTGAAGTTTCGAGAAGGAGCCTGTGGTTGGA
                      ____________________________________________________________
consensus             CCACCAGTGCTGCCAAAGCCTTGCATTGTTTGAAGTTTCGAGAAGGAGCCTGTGGTTGGA
 
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JMSF011O02+                         GACGTTAGAGAGAAGAACAGGAGATTCGAGAAACGACGTCGGACTG
JMFF040C05+                     CTTTGACGTTAGAGAGAAGAACAGGAGATTCGAGAAACGACGTCGGACTG
JMSF019G14+           GAGGGCTCTGCTTTGACGTTAGAGAGAAGAACAGGAGATTCGAGAAACGACGTCGGACTG
rJMFF040C05-                    CTTTGACGTTAGAGAGAAGAACAGGAGATTCGAGAAACGACGTCGGACTG
                      ____________________________________________________________
consensus             GAGGGCTCTGCTTTGACGTTAGAGAGAAGAACAGGAGATTCGAGAAACGACGTCGGACTG
 
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JMSF011O02+           AGGCCAGGAGGGATGGTAATACAGGCAGACCTAGAGATCGGGAGCTTGGCCGGAGACATG
JMSF010I24+                                CAGGCAGACCTAGAGATCGGGAGCTTGGCCGGAGACATG
JMFF040C05+           AGGCCAGGAGGGATGGTAATACAGGCAGACCTAGAGATCGGGAGCTTGGCCGGAGACATG
JMSF019G14+           AGGCCAGGAGGGATGGTAATACAGGCAGACCTAGAGATCGGGAGCTTGGCCGGAGACATG
rJMFF040C05-          AGGCCAGGAGGGATGGTAATACAGGCAGACCTAGAGATCGGGAGCTTGGCCGGAGACATG
                      ____________________________________________________________
consensus             AGGCCAGGAGGGATGGTAATACAGGCAGACCTAGAGATCGGGAGCTTGGCCGGAGACATG
 
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JMSF011O02+           AGCTTGTACTTAGCTCCACCGTTAGGTCCGGCGGCGTTCCTGGAGAAGACGGCGGCATCA
JMSF010I24+           AGCTTGTACTTAGCTCCACCGTTAGGTCCGGCGGCGTTCCTGGAGAAGACGGCGGCATCA
JMFF040C05+           AGCTTGTACTTAGCTCCACCGTTAGGTCCGGCGGCGTTCCTGGAGAAGACGGCGGCATCA
JMSF019G14+           AGCTTGTACTTAGCTCCACCGTTAGGTCCGGCGGCGTTCCTGGAGAAGACGGCGGCATCA
rJMFF040C05-          AGCTTGTACTTAGCTCCACCGTTAGGTCCGGCGGCGTTCCTGGAGAAGACGGCGGCATCA
                      ____________________________________________________________
consensus             AGCTTGTACTTAGCTCCACCGTTAGGTCCGGCGGCGTTCCTGGAGAAGACGGCGGCATCA
 
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JMSF011O02+           GAAGCGTCGGAGCTGCCGTCATCGACGTGGTCGGGAGCGTGAGCGGCGTCGTCGGCGCGT
JMSF010I24+           GAAGCGTCGGAGCTGCCGTCATCGACGTGGTCGGGAGCGTGAGCGACGTCGTCGGCGCGT
JMFF040C05+           GAAGCGTCGGAGCTGCCGTCATCGACGTGGTCGGGAGCGTGAGCGGCGTCGTCGGCGCG 
JMSF019G14+           GAAGCGTCGGAGCTGCCGTCATCGACGTGGTCGGGAGCGTGAGCGGCGTCGTCGGCGCGT
rJMFF040C05-          GAAGCGTCGGAGCTGCCGTCATCGACGTGGTCGGGAGCGTGAGCGGCGTCGTCGGCGCGT
                      ____________________________________________________________
consensus             GAAGCGTCGGAGCTGCCGTCATCGACGTGGTCGGGAGCGTGAGCGGCGTCGTCGGCGCGT
 
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JMSF011O02+           GGAGCAGCGAGGTGTTGCTGAGAGTGGGAGTTAGAGTAGAGAGAGTGTGAGTGAGAGTCC
JMSF010I24+           GGAGCAGCGAGGTGTTGCTGAGAGTGGGAGTTAGAGTAGAGAGAGTGTGAGTGAGAGTCC
JMSF019G14+           GGAGCAGCGAGGTGTTGCTGAGAGTGGGAGTTAGAGTAGAGAGAGTGTGAGTGAGAGTCC
rJMFF040C05-          GGAGCAGCGAGGTGTTGCTGAGAGTGGGAGTTAGAGTAGAGAGAGTGTGAGTGAGAGTCC
                      ____________________________________________________________
consensus             GGAGCAGCGAGGTGTTGCTGAGAGTGGGAGTTAGAGTAGAGAGAGTGTGAGTGAGAGTCC
 
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JMSF011O02+           TCCATTGAGGATTCAGGCAAGAAAGAGGTTC                             
JMSF010I24+           TCCATTGAGGATTCAGGCAAGAAAGAGGTTC                             
JMSF019G14+           TCCATTGAGGATTCAGGCAAGAAAGAGGTTC                             
rJMFF040C05-          TCCATTGAGGATTCAGGCAAGAAAGAGGTTCTCAGTTATCGCTGTTCCAGACAGCGATGA
                      ____________________________________________________________
consensus             TCCATTGAGGATTCAGGCAAGAAAGAGGTTCTCAGTTATCGCTGTTCCAGACAGCGATGA