| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039E04 | Sequence | 528 | 008293 (6) | gb|AAW31716.1| | 1e-51 | plastid beta-ketoacyl ACP synthase [Betula pendula] | 554 | 008293 (6) | gb|AAW31716.1| | 7e-46 | plastid beta-ketoacyl ACP synthase [Betula pendula] |
| JMSF002E24 | Sequence | 405 | 011871 (5) | ref|XP_010654405.1| | 2e-13 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi | 547 | 008293 (6) | ref|XP_009345512.1| | 5e-42 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Py |
| JMSF002H17 | Sequence | 416 | 011871 (5) | ref|XP_010654405.1| | 1e-28 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi | 172 | 008293 (6) | ref|XP_010477131.1| | 3e-07 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like iso |
| JMSF010L13 | Sequence | 419 | 011871 (5) | ref|XP_010654405.1| | 3e-23 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi | 101 | 008293 (6) | ref|XP_009343350.1| | 6e-04 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like isof |
| JMSF049M05 | Sequence | 623 | 011871 (5) | ref|XP_010654405.1| | 3e-44 | PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi | 403 | 008293 (6) | gb|AAW31716.1| | 1e-35 | plastid beta-ketoacyl ACP synthase [Betula pendula] |
This contig is upended
. : . : . : . : . : . :
rJMSF002E24+ CATCCAGNGGGNGCGGGAACTNTT
____________________________________________________________
consensus CATCCAGNGGGNGCGGGAACTNTT
. : . : . : . : . : . :
rJMSF002E24+ TTNTGCATTGNGAAGGCCTTGAAACAATCCGGGGNGAAAAGNGAAGATGNGAATTNTNTA
JMFF039E04- GAAGGCCTTGAAACAATCCGGGGTGAAAAGAGAAGATGTGAATTATATA
rJMSF049M05+ GAAGGCCTTGAAACNATCCGGGGTGAAAAGNGAAGATGTGAATTATATA
rJMSF010L13+ GAAGGCCNTGAAACAATCCGGGGNGAAAAGNGAAGATGTGAATTATATA
rJMFF039E04+ GAAGGCCTTGAAACAATCCGGGGTGAAAAGAGAAGATGTGAATTATATA
____________________________________________________________
consensus TTNTGCATTGNGAAGGCCTTGAAACAATCCGGGGTGAAAAGAGAAGATGTGAATTATATA
. : . : . : . : . : . :
rJMSF002E24+ AACGCCCNTGCCNCTTTGACCCCAGNTGGNGATTTGAAAGAATACCCGGCTATAATTNGT
JMFF039E04- AACGCCCATGCCACTTCGACCCCAGCTGGTGATCTGAAAGAATACCAGGCTATAATTCGT
rJMSF049M05+ AACGCCCNTGCCNCTTTGACCCCAGNTGGNGATTTGAAAGAATACCCGGCTATAATTCGT
rJMSF010L13+ AACGCCCNTGCCNCTTTGNCCCCAGNTGGNGATTTGAAAGAATA
rJMFF039E04+ AACGCCCATGCCACTTNGACCCCAGCTGGTGATTTGAAAGAATACCAGGCTATAATTCGT
____________________________________________________________
consensus AACGCCCATGCCACTTTGACCCCAGCTGGTGATTTGAAAGAATACCAGGCTATAATTCGT
. : . : . : . : . : . :
rJMSF002E24+ TGTTTTGGACAGAATAGNGAGCTTAAAATTAACTNGNCAAAATCGATGATCGGTCATNTC
JMFF039E04- TGTTTTGGACAGAATAGTGAGCTTAAAATTAACTCGACAAAATCGATGATCGGTCATCTC
rJMSF049M05+ TGTTTTGGNCNGAATAGTGNGCTTAAAATTAACTNGNCAAAATCGNTGATCGGTCATNTC
rJMFF039E04+ TGTTTTGGACAGAATAGTGAGCTTAAAATTAACTNGACAAAATCGATGATCGGTCATNTC
____________________________________________________________
consensus TGTTTTGGACAGAATAGTGAGCTTAAAATTAACTCGACAAAATCGATGATCGGTCATCTC
. : . : . : . : . : . :
rJMSF002E24+ CTCGGGGCTGCTGGNGCAGTTGAAGCCNTTGCAGCAATCATGGCTATACNGACNGGANGG
JMFF039E04- CTCGGGGCTGCTGGTGCATTTGAAGCCATTGCAGCAATCATGGCTATACAGACAGGATGG
rJMSF049M05+ CTCGGGGCTGCTGGNGCNGTTGAAGCCNTTGCAGCAATCATGGCTATACNGNCNGGNTGG
rJMFF039E04+ CTNGGGGCTGCTGGTGCATTTGAAGCCATTGCAGCAATCATGGCTATACAGACAGGATGG
____________________________________________________________
consensus CTCGGGGCTGCTGGTGCATTTGAAGCCATTGCAGCAATCATGGCTATACAGACAGGATGG
. : . : . : . : . : . :
rJMSF002E24+ ATCCNTCCAAATACCAATNTCGNGAAGCCTGATGAAGGATTGGACNCCCCAAGGGNGCTG
JMFF039E04- ATCCATCCAAATACCAATCTCGAGAAGCCTGATGAAGGATTGGACACCACAAGGGTGCTG
rJMSF002H17+ GAAGCCTGATGAAGGNTTGGGCCCCCCAAGGGNGCTG
rJMSF049M05+ NTCCNTCCAAATACCNATNTCGNGAAGCCTGATGAAGGNTTGGNCCCCCCAAGGGNGCTG
rJMFF039E04+ ATCCATCCAAATACCAATNTCGAGAAGCCTGATGAAGGATTGGACNCCNCAAGGGTGCTG
____________________________________________________________
consensus ATCCATCCAAATACCAATCTCGAGAAGCCTGATGAAGGATTGGACCCCCCAAGGGTGCTG
. : . : . : . : . : . :
rJMSF002E24+ GTTGGGTTTAAGAAGGAAAGGTTGGACATAAAAGNGGCNCTTTNTAACTCNTTTGGCTTT
JMFF039E04- GTTGGGTCTAAGAAGGAAAGGTTGGACATAAAAGTGGCACTTTCTAACTCATTTGGCTTT
rJMSF002H17+ GTTGGGTTTAAGAAGGAAAGGTTGGACATAAAAGNGGCNCTTTTTAACTCTTTTGG
rJMSF049M05+ GTTGGGTTTAAGAAGGAAAGGTTGGACATAAAAGNGGCNCTTTNTAACTNTTTTGGCTTT
rJMFF039E04+ GTTGGGTTTAAGAAGGAAAGGTTGGACATAAAAGTGGCACTTTTTAACTCATTTGGCTTT
____________________________________________________________
consensus GTTGGGTTTAAGAAGGAAAGGTTGGACATAAAAGTGGCACTTTTTAACTCATTTGGCTTT
. : . : . : . : . : . :
rJMSF002E24+ GGNGGACNCAACTNTTNTNTTNTGTTTGCCCCNTACAAGGNTGACTAGAGCTTTGTATTG
JMFF039E04- GGTGGACACAACTCTTCTATTCTGTTTGCACCATACAAGGATGACTAGAGCTTTGTATTG
rJMSF049M05+ GGNGGACNCAACT
rJMFF039E04+ GGTGGACNCAACTNTTTTATTNTGTTTGCNCCATACAAGGATGACTAGAGCTTTGTATTG
____________________________________________________________
consensus GGTGGACACAACTCTTTTATTCTGTTTGCCCCATACAAGGATGACTAGAGCTTTGTATTG
. : . : . : . : . : . :
rJMSF002E24+ CTGAATCNTGAATTCCCNTTTTGATTTTTTTTTTTT
JMFF039E04- CTGAATCATGAATTCCCATTTTGATTTTTTTTTTTTAATCCTTCTGACCCTGCCTTAATT
rJMFF039E04+ CTGAATCATGAATTCCCATTTTGATTTTTTTTTTTTAATCCTTCTGACCCTGCCTTAATT
____________________________________________________________
consensus CTGAATCATGAATTCCCATTTTGATTTTTTTTTTTTAATCCTTCTGACCCTGCCTTAATT
. : . : . : . : . : . :
JMFF039E04- TGTATTGCTGGGGGTACGGNGATACTTGAGCTTTGACACTTTGCCTTTTACA
rJMFF039E04+ TGTATTGCTGGGGGTACGGTGATACTTGAGCTTTGACACTTTGCCTTTTACATAGATATA
____________________________________________________________
consensus TGTATTGCTGGGGGTACGGTGATACTTGAGCTTTGACACTTTGCCTTTTACATAGATATA