Contig 008287:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037O11Sequence611007437 (2)gb|KJB73465.1|5e-26hypothetical protein B456_011G234000 [Gossypium raimondii]728008287 (2)ref|XP_009591901.1|1e-69PREDICTED: poly(rC)-binding protein 4-like, partial [Nicotiana tomentosiformis]
JMSF006J07Sequence325007437 (2)ref|XP_009760990.1|6e-34PREDICTED: RNA-binding protein Nova-1-like isoform X2 [Nicotiana sylvestris]107008287 (2)

Alignment

This contig is upended


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rJMFF037O11+                                                              AAATCCGC
                      ____________________________________________________________
consensus                                                                 AAATCCGC
 
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rJMFF037O11+          GCTGTCGAATTGATTCTATATAAGTTGGCAGAAGACTCTTCTTATATGCAGTCCATGAAC
                      ____________________________________________________________
consensus             GCTGTCGAATTGATTCTATATAAGTTGGCAGAAGACTCTTCTTATATGCAGTCCATGAAC
 
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rJMFF037O11+          GCCCCATTTCCATATTCAGCGGTTTATATGGGAATGAACTATGTGCCAAATGGGGTTGGA
                      ____________________________________________________________
consensus             GCCCCATTTCCATATTCAGCGGTTTATATGGGAATGAACTATGTGCCAAATGGGGTTGGA
 
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rJMFF037O11+          GGGAGATTTCAGAATAACAGATATCAAAGCAAGGAGGATAGGAGCAATTCTGTGACTATT
                      ____________________________________________________________
consensus             GGGAGATTTCAGAATAACAGATATCAAAGCAAGGAGGATAGGAGCAATTCTGTGACTATT
 
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rJMFF037O11+          GGTGTTGCAGATGATCACATTGGGTTGGTGCTGGGTCGGAATGGAAGGAACATCATTGAG
                      ____________________________________________________________
consensus             GGTGTTGCAGATGATCACATTGGGTTGGTGCTGGGTCGGAATGGAAGGAACATCATTGAG
 
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rJMFF037O11+          ATAAGTCAGCTTAGCGGAGCTAGAATAAAGATTTCTGACAGGGGTGATTTCATGTCTGGG
                      ____________________________________________________________
consensus             ATAAGTCAGCTTAGCGGAGCTAGAATAAAGATTTCTGACAGGGGTGATTTCATGTCTGGG
 
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rJMFF037O11+          ACTACTTCTGACAGGAAGGTTACTATTACAGGGACCCAACGAGCTATTCGTACAGCTGAG
                      ____________________________________________________________
consensus             ACTACTTCTGACAGGAAGGTTACTATTACAGGGACCCAACGAGCTATTCGTACAGCTGAG
 
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rJMFF037O11+          GCTATGATCTCGCGGAAAGTAGCTTCAGTCAATGAGAGGTGATGGAAAACCATATATTAT
                      ____________________________________________________________
consensus             GCTATGATCTCGCGGAAAGTAGCTTCAGTCAATGAGAGGTGATGGAAAACCATATATTAT
 
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rJMSF006J07+                                                     TTAAAATGCTGATCTGA
rJMFF037O11+          TCTCATGCATAGCTTGTTGAGAATCTTTTTAATGCGGTGAGTCTTAAAATGCTGATCTGA
                      ____________________________________________________________
consensus             TCTCATGCATAGCTTGTTGAGAATCTTTTTAATGCGGTGAGTCTTAAAATGCTGATCTGA
 
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rJMSF006J07+          GGCAGGCAAGCAAGTTTTTGNTGAAAGAAAGCATCANTTATTTCTGGAAATTNTTTTAGA
rJMFF037O11+          GGCAGGCAAGCAAGTTTTTGTTGAAAGAAAGCATCAGTTATTTCTGGAAATTCTTTTAGA
                      ____________________________________________________________
consensus             GGCAGGCAAGCAAGTTTTTGTTGAAAGAAAGCATCAGTTATTTCTGGAAATTCTTTTAGA
 
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rJMSF006J07+          AGCAAAGCTNGTNGGCATAAGTGATTATAA                              
rJMFF037O11+          AGCAAAGCTTGTAGGCATAAGTGATTATAACTGATTTAATTGGTGGATGGTAACTTGTGA
                      ____________________________________________________________
consensus             AGCAAAGCTTGTAGGCATAAGTGATTATAACTGATTTAATTGGTGGATGGTAACTTGTGA
 
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rJMFF037O11+          ACACAGTGGGTTATTGTGATACTCCAAGTAGCATTGAATCTATAATTTTGAGGAATCAAG
                      ____________________________________________________________
consensus             ACACAGTGGGTTATTGTGATACTCCAAGTAGCATTGAATCTATAATTTTGAGGAATCAAG
 
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rJMFF037O11+          GACATTATGCATTAGATACGTTCAACATTTGGAATTTTTTAAATTATTACTCATACGTGT
                      ____________________________________________________________
consensus             GACATTATGCATTAGATACGTTCAACATTTGGAATTTTTTAAATTATTACTCATACGTGT