clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF020H14 | Sequence | 453 | 002624 (5) | ref|XP_011076201.1| | 2e-25 | PREDICTED: heat stress transcription factor B-2a-like [Sesamum indicum] ref|XP_ | 727 | 008286 (5) | ref|XP_009603015.1| | 6e-45 | PREDICTED: heat stress transcription factor B-2b [Nicotiana tomentosiformis] ref |
JMFF022I10 | Sequence | 498 | 002624 (5) | ref|XP_009603015.1| | 5e-46 | PREDICTED: heat stress transcription factor B-2b [Nicotiana tomentosiformis] ref | 728 | 008286 (5) | ref|XP_009603015.1| | 9e-44 | PREDICTED: heat stress transcription factor B-2b [Nicotiana tomentosiformis] ref |
JMFF033A24 | Sequence | 527 | 008286 (5) | ref|XP_009603015.1| | 3e-41 | PREDICTED: heat stress transcription factor B-2b [Nicotiana tomentosiformis] ref | 749 | 002624 (5) | ref|XP_009603015.1| | 2e-41 | PREDICTED: heat stress transcription factor B-2b [Nicotiana tomentosiformis] ref |
JMFF037O01 | Sequence | 122 | 002624 (5) | emb|CDP21507.1| | 2e-19 | unnamed protein product [Coffea canephora] | 686 | 008286 (5) | ref|XP_009603015.1| | 4e-39 | PREDICTED: heat stress transcription factor B-2b [Nicotiana tomentosiformis] ref |
JMSF011F18 | Sequence | 459 | 002624 (5) | ref|XP_009603015.1| | 2e-45 | PREDICTED: heat stress transcription factor B-2b [Nicotiana tomentosiformis] ref | 777 | 008286 (5) | emb|CDP21507.1| | 4e-47 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF011F18+ TGCTACGGTTACGGTTACGGC
____________________________________________________________
consensus TGCTACGGTTACGGTTACGGC
. : . : . : . : . : . :
rJMSF011F18+ TGTAGCAGCCGTTCCTGCACAGCCATCGAAGACGGTTACACCTTCGAATTCAGGCGAAGA
rJMFF020H14+ CTTCGAATTCAGGCGAAGA
rJMFF022I10+ AGGCGAAGA
____________________________________________________________
consensus TGTAGCAGCCGTTCCTGCACAGCCATCGAAGACGGTTACACCTTCGAATTCAGGCGAAGA
. : . : . : . : . : . :
JMFF033A24+ GGAACAGCCGCGATAGATGCATCGCAAGGAGG
rJMSF011F18+ GCAAGTAGTGTCATCTAACTCGTCTCCCGGAACAGCCGCGATAGATGCATCGCAAGGAGG
rJMFF020H14+ GCAAGTAGTGTCATCTAACTCGTCTCCCGGAACAGCCGCGATAGATGCATCGCAAGGAGG
rJMFF022I10+ GCAAGTAGTGTCATCTAACTCGTCTCCCGGAACAGCCGCGATAGATGCATCGCAAGGAGG
rJMFF037O01+ GCCGCGATAGANGCATCGCAAGGAGG
____________________________________________________________
consensus GCAAGTAGTGTCATCTAACTCGTCTCCCGGAACAGCCGCGATAGATGCATCGCAAGGAGG
. : . : . : . : . : . :
JMFF033A24+ AAGTACATCGGAGCTGATCGGAGAGAACGAGCGGCTGAGGAAGGAGAACATAGAGCTAAA
rJMSF011F18+ AAGTACATCGGAGCTGATCGGAGAGAACGAGCGGCTGAGGAAGGAGAACATAGAGCTAAA
rJMFF020H14+ AAGTACATCGGAGCTGATCGGAGAGAACGAGCGGCTGAGGAAGGAGAACATAGAGCTAAA
rJMFF022I10+ AAGTACATCGGAGCTGATCGGAGAGAACGAGCGGCTGAGGAAGGAGAACATAGAGCTAAA
rJMFF037O01+ AAGTACATCGGAGCTGATCGGAGAGAACGAGCGGCTGAGGAAGGAGAACATAGAGCTAAT
____________________________________________________________
consensus AAGTACATCGGAGCTGATCGGAGAGAACGAGCGGCTGAGGAAGGAGAACATAGAGCTAAA
. : . : . : . : . : . :
JMFF033A24+ CAAGGAGCTGAGCCAGATGAAAAGCCTATGCAACAATATATACGCATTAATGTCAAATTA
rJMSF011F18+ CAAGGAGCTGAGCCAGATGAAAAGCCTATGCAACAATATATACGCATTAATGTCAAATTA
rJMFF020H14+ CAAGGAGCTGAGCCAGATGAAAAGCCTATGCAACAATATATACGCATTAATGTCAAATTA
rJMFF022I10+ CAAGGAGCTGAGCCAGATGAAAAGCCTATGCAACAATATATACGCATTAATGTCAAATTA
rJMFF037O01+ CAAGGAGCTGAGCCAGATGAAAAGCCTATGCAACAATATATACGCATTAATGTCAAATTA
____________________________________________________________
consensus CAAGGAGCTGAGCCAGATGAAAAGCCTATGCAACAATATATACGCATTAATGTCAAATTA
. : . : . : . : . : . :
JMFF033A24+ CTCCGGCAATAACTCCAACTCCAGCAATCAATCGGCGGAAAGCAGCTTGCAATCCCTAAA
rJMSF011F18+ CTCCGGCAATAACTCCAACTCCAGCAATCAATCGGCGGAAAGCAGCTTGCAATCCCTAAA
rJMFF020H14+ CTCCGGCAATAACTCCAACTCCAGCAATCAATCGGCGGAAAGCAGCTTGCAATCCCTAAA
rJMFF022I10+ CTCCGGCAATAACTCCAACTCCAGCAATCAATCGGCGGAAAGCAGCTTGCAATCCCTAAA
rJMFF037O01+ CTCCGGCAATAACTCCAACTCCAGCAATCAATCGGCGGAAAGCAGCTTGCAATCCCTAAA
____________________________________________________________
consensus CTCCGGCAATAACTCCAACTCCAGCAATCAATCGGCGGAAAGCAGCTTGCAATCCCTAAA
. : . : . : . : . : . :
JMFF033A24+ GCCGCTCGATCTCATGCCTGCCACCGCCACCGCCACCGCCGGCTGCGGCGGAGAGAACCA
rJMSF011F18+ GCCGCTCGATCTCATGCCTGCCACCGCCACCGCCACCGCCGGCTGCGGCGGAGAGAACCA
rJMFF020H14+ GCCGCTCGATCTCATGCCTGCCACCGCCACCGCCACCGCCGGCTGCGGCGGAGAGAACCA
rJMFF022I10+ GCCGCTCGATCTCATGCCTGCCACCGCCACCGCCACCGCCGGCTGCGGCGGAGAGAACCA
rJMFF037O01+ GCCGCTCGATCTCATGCCTGCCACCGCCACCGCCACCGCCGGCTGCGGCGGAGAGAACCA
____________________________________________________________
consensus GCCGCTCGATCTCATGCCTGCCACCGCCACCGCCACCGCCGGCTGCGGCGGAGAGAACCA
. : . : . : . : . : . :
JMFF033A24+ AACGGAGCCTGACGAAATGCGAGCGAGACTATTCGGAGTCTCGATCGGGTCAAAGCGGGT
rJMSF011F18+ AACGGAGCCTGACGAAATGCGAGCGAGACTATTCGGAGTCTCGATCGGGTCAAAGCGGGT
rJMFF020H14+ AACGGAGCCTGACGAAATGCGAGCGAGACTATTCGGAGTCTCGATCGGGTCAAAGCGGGT
rJMFF022I10+ AACGGAGCCTGACGAAATGCGAGCGAGACTATTCGGAGTCTCGATCGGGTCAAAGCGGGT
rJMFF037O01+ AACGGAGCCTGACGAAATGCGAGCGAGACTATTCGGAGTCTCGATCGGGTCAAAGCGGGT
____________________________________________________________
consensus AACGGAGCCTGACGAAATGCGAGCGAGACTATTCGGAGTCTCGATCGGGTCAAAGCGGGT
. : . : . : . : . : . :
JMFF033A24+ GCGTGAAGGCGAGGATGGATCGGCGGAGCAGGATCACGATTTACGGCTGCAGCAGCCGGG
rJMSF011F18+ GCGTGAAGGCGAGGATGGATCGGCGGAGCAGGATCACGATTTACGGCTGCAGCAGCCGGG
rJMFF020H14+ GCGTGAAGGCGAGGATGGATCGGCGGAGCAGGATCACGATTTACGGCTGCAGCAGCCGGG
rJMFF022I10+ GCGTGAAGGCGAGGATGGATCGGCGGAGCAGGATCACGATTTACGGCTGCAGCAGCCGGG
rJMFF037O01+ GCGTGAAGGCGAGGATGGATCGGCGGAGCAGGATCNCGATTTACGGCTGCAGCAGCCGGG
____________________________________________________________
consensus GCGTGAAGGCGAGGATGGATCGGCGGAGCAGGATCACGATTTACGGCTGCAGCAGCCGGG
. : . : . : . : . : . :
JMFF033A24+ GACGGACGTGAAATCGGAGCCGGAAAACGGCGAGGATAACGAAGAGTCGCCGTGGCTTAG
rJMSF011F18+ GACGGACGTGAAATCGGAGCCGGAAAACGGCGAGGATAACGAAGAGTCGCCGTGGCTTAG
rJMFF020H14+ GACGGACGTGAAATCGGAGCCGGAAAACGGCGAGGATAACGAAGAGTCGCCGTGGCTTAG
rJMFF022I10+ GACGGACGTGAAATCGGAGCCGGAAAACGGCGAGGATAACGAAGAGTCGCCGTGGCTTAG
rJMFF037O01+ GACGGACGTGAAATCGGAGCCGGAAAACGGCGAGGATAACGAAGAGTCGCCGTGGCTTAG
____________________________________________________________
consensus GACGGACGTGAAATCGGAGCCGGAAAACGGCGAGGATAACGAAGAGTCGCCGTGGCTTAG
. : . : . : . : . : . :
JMFF033A24+ GCAGTGCCACAGGCAAAATCAAAGGGTTTGTAATTGAAAGGGAAGGGAAGGATGATGATG
rJMSF011F18+ GCAGTGCCACAGGCAAAATCAAAGGGTTTGTAATTGAAAGGGAAGGGAAGGATGATGATG
rJMFF020H14+ GCAGTGCCACAGGCAAAATCAAAGGGTTTGTAATTGAAAGGGAAGGGAAGGATGATGATG
rJMFF022I10+ GCAGTGCCACAGGCAAAATCAAAGGGTTTGTAATTGAAAGGGAAGGGAAGGATGATGATG
rJMFF037O01+ GCAGTGCCACAGGCAAAATCAAAGGGTTTGTAATTGAAAGGGAAGGGAAGGATGATGATG
____________________________________________________________
consensus GCAGTGCCACAGGCAAAATCAAAGGGTTTGTAATTGAAAGGGAAGGGAAGGATGATGATG
. : . : . : . : . : . :
JMFF033A24+ AATGATTAGATCGAT
rJMSF011F18+ AATGATTAGATCGATAGATTAGCTGAGAATGGCGGAGAGGTGTGAATCCGTGATAGGGTC
rJMFF020H14+ AATGATTAGATCGATAGATTAGCTGAGAGTGGCGGAGAGGTGTGAATCCGTGATAGGGTC
rJMFF022I10+ AATGATTAGATCGATAGATTAGCTGAGAATGGCGGAGAGGTGTGAATCCGTGATAGGGTC
rJMFF037O01+ AATGATTAGATCGATAGATTAGCTGAGAATGGCGGAGAGGTGTGAATCCGTGATAGGGTC
____________________________________________________________
consensus AATGATTAGATCGATAGATTAGCTGAGAATGGCGGAGAGGTGTGAATCCGTGATAGGGTC
. : . : . : . : . : . :
rJMSF011F18+ TCTGTACGACTACGAGGAGAGGCACGTGCGACAATGAGTCACGTGTCTCGGCTAACCTTT
rJMFF020H14+ TCTGTACGACTACGAGGAGAGGCACGTGCGACAATGAGTCACGTGTCTCGGCTAACCTTT
rJMFF022I10+ TCTGTACGACTACGAGGAGAGGCACGTGCGACAATGAGTCACGTGTCTCGGCTAACCTTT
rJMFF037O01+ TCTGTACGACTACGAGGAGAGGCACGTGCGACAATGAGTCACGTGTCTCGGCTAACCTTT
____________________________________________________________
consensus TCTGTACGACTACGAGGAGAGGCACGTGCGACAATGAGTCACGTGTCTCGGCTAACCTTT
. : . : . : . : . : . :
rJMSF011F18+ GTCTCCTTGGGGTCCATTT
rJMFF020H14+ GTCTTCTTGGGGTCCATTTTCCCGAAGCTTCTTAGCCCTTTTTATATA
rJMFF022I10+ GTCTTCTTGGGGTCCATTTTCCCGAAGCTTCTTAGCCCTTTTTATATATTATTATTATT
rJMFF037O01+ GTCTTCTTGGGGTCCATTTTCCCGAAGCTTCTTAGCCCTTTTTATATATTATTATTATTA
____________________________________________________________
consensus GTCTTCTTGGGGTCCATTTTCCCGAAGCTTCTTAGCCCTTTTTATATATTATTATTATTA