Contig 008285:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037L13Sequence620008285 (2)ref|XP_004246494.1|6e-42PREDICTED: 50S ribosomal protein L12, chloroplastic [Solanum lycopersicum] ref|644008285 (2)ref|XP_008364609.1|4e-32PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Malus domestica]

Alignment

This contig is upended


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JMFF037L13-                      GTAAAACTAAGAAGTACAGAGCCTGGACATAGAGTCGCAGACTGCAACA
                      ____________________________________________________________
consensus                        GTAAAACTAAGAAGTACAGAGCCTGGACATAGAGTCGCAGACTGCAACA
 
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JMFF037L13-           GGCCCTTCGCCATGGGTGCAATCCACCATTATCATTTCTGAAATCTCAGCGGCTCAGCCT
                      ____________________________________________________________
consensus             GGCCCTTCGCCATGGGTGCAATCCACCATTATCATTTCTGAAATCTCAGCGGCTCAGCCT
 
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JMFF037L13-           CCGTCTACCAGCGTCACCGGCCGCCGACAGCCTCTCCTAGCGTCGCCAGCGACTACGTTG
                      ____________________________________________________________
consensus             CCGTCTACCAGCGTCACCGGCCGCCGACAGCCTCTCCTAGCGTCGCCAGCGACTACGTTG
 
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JMFF037L13-           CCTCACCTTCCCGTCCGCCGCCAACAACCAGCCTCGCCACGCCTGTCGCTGCCGTCCTTC
                      ____________________________________________________________
consensus             CCTCACCTTCCCGTCCGCCGCCAACAACCAGCCTCGCCACGCCTGTCGCTGCCGTCCTTC
 
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JMFF037L13-           CGACACTCCGGGAAGAAGCTTGATAAGAGCTGCAAAATCAAATAATTCCTTCCAAGTAAA
                      ____________________________________________________________
consensus             CGACACTCCGGGAAGAAGCTTGATAAGAGCTGCAAAATCAAATAATTCCTTCCAAGTAAA
 
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JMFF037L13-           TGAACTATCTCTTGTAATTCATTGTCTCCCTTAATCCACAAGCCATGAAGCTTCTTGCAA
                      ____________________________________________________________
consensus             TGAACTATCTCTTGTAATTCATTGTCTCCCTTAATCCACAAGCCATGAAGCTTCTTGCAA
 
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JMFF037L13-           CTTTTCGATCCTCCATGGCTCTTCGCGGAATAACAGGACCTTTGCAATCTCGCTCCTTCC
                      ____________________________________________________________
consensus             CTTTTCGATCCTCCATGGCTCTTCGCGGAATAACAGGACCTTTGCAATCTCGCTCCTTCC
 
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JMFF037L13-           AACCTGATTTTGTTCCAAGAGATCCAAATGCGGGGCCTAGAAGATACAAATACCCTGCTG
                      ____________________________________________________________
consensus             AACCTGATTTTGTTCCAAGAGATCCAAATGCGGGGCCTAGAAGATACAAATACCCTGCTG
 
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JMFF037L13-           TGTATGATCCATATGGCCCTAGACCCCCGCCTTCCGATAAGATCATTCAGCTTGTGGAAC
                      ____________________________________________________________
consensus             TGTATGATCCATATGGCCCTAGACCCCCGCCTTCCGATAAGATCATTCAGCTTGTGGAAC
 
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JMFF037L13-           GGATTGCTGGTCTCACACCTGAGGAGCGCAGACAAATTGGCCCTGTACTTAGAGAGAGAC
rJMFF037L13+                          ACCTGAGGAGCGCAGACAAATTGGCCCTGTACTTAGAGAGAGAC
                      ____________________________________________________________
consensus             GGATTGCTGGTCTCACACCTGAGGAGCGCAGACAAATTGGCCCTGTACTTAGAGAGAGAC
 
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JMFF037L13-           TGAAGCATCCCATGCTGAAACCTATTTCGGT                             
rJMFF037L13+          TGAAGCATCCCATGCTGAAACCTATTTCGGTAGAAGGCATGGATTTTGGTGCTGCTGGAG
                      ____________________________________________________________
consensus             TGAAGCATCCCATGCTGAAACCTATTTCGGTAGAAGGCATGGATTTTGGTGCTGCTGGAG
 
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rJMFF037L13+          CTGGAGCTGGAGCATCAAAGACCGAGGAGAAGAAGGCTGAAAAAACAGTCTTTGATGTTA
                      ____________________________________________________________
consensus             CTGGAGCTGGAGCATCAAAGACCGAGGAGAAGAAGGCTGAAAAAACAGTCTTTGATGTTA
 
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rJMFF037L13+          AGCTAGAGAAATTCGATGCAGCTGCAAAAATCAAGGTGATCAAGGAGGTACGTGGTTTTA
                      ____________________________________________________________
consensus             AGCTAGAGAAATTCGATGCAGCTGCAAAAATCAAGGTGATCAAGGAGGTACGTGGTTTTA
 
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rJMFF037L13+          CGAGTTTGGGATTGAAGGAAGCCAAGGATCTAGTAGAAAAGGTACCCGCAACTCTTAAGC
                      ____________________________________________________________
consensus             CGAGTTTGGGATTGAAGGAAGCCAAGGATCTAGTAGAAAAGGTACCCGCAACTCTTAAGC
 
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rJMFF037L13+          AAGGGGTCACCAAAGAGGAGGCAAATGAGATAATCGAAAAGATCAAAGCTGCTGGAGGAA
                      ____________________________________________________________
consensus             AAGGGGTCACCAAAGAGGAGGCAAATGAGATAATCGAAAAGATCAAAGCTGCTGGAGGAA
 
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rJMFF037L13+          TTGCAGTGATGGAGTGATAATCCCTGGGCGGGCGGGGATTATGTTCTTCCTAAGGATGAC
                      ____________________________________________________________
consensus             TTGCAGTGATGGAGTGATAATCCCTGGGCGGGCGGGGATTATGTTCTTCCTAAGGATGAC
 
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rJMFF037L13+          GAAATGAACCTTCCTTTCTTGGATGATTGTTTTGCCAGAGGCATGAAGAAGAGCATTTAA
                      ____________________________________________________________
consensus             GAAATGAACCTTCCTTTCTTGGATGATTGTTTTGCCAGAGGCATGAAGAAGAGCATTTAA
 
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rJMFF037L13+          ATTCAGCCATTGGAATTGTTATACTTTTGGAGATACTTTTTTCTCTTCCAAATAAACATG
                      ____________________________________________________________
consensus             ATTCAGCCATTGGAATTGTTATACTTTTGGAGATACTTTTTTCTCTTCCAAATAAACATG
 
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rJMFF037L13+          GTTTCTAGATATTGGCTGGTCTGGCAAAGCCTATAGTCATGAATAGTGGATAATTTTATT
                      ____________________________________________________________
consensus             GTTTCTAGATATTGGCTGGTCTGGCAAAGCCTATAGTCATGAATAGTGGATAATTTTATT
 
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rJMFF037L13+          ATCTACTCCAATTTATCCATTATCAGTTTGAAAAAAACTAAATGCATTGTTCAATCTGTT
                      ____________________________________________________________
consensus             ATCTACTCCAATTTATCCATTATCAGTTTGAAAAAAACTAAATGCATTGTTCAATCTGTT