Contig 008283:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036O14Sequence506008283 (4)gb|AAL25604.1|2e-73AT3g11530/F24K9_21 [Arabidopsis thaliana] gb|AAM19989.1| AT3g11530/F24K9_21 [Ara688008283 (4)gb|AAL25604.1|1e-72AT3g11530/F24K9_21 [Arabidopsis thaliana] gb|AAM19989.1| AT3g11530/F24K9_21 [Ara
JMFN006N01Sequence581008283 (4)gb|AAL25604.1|3e-73AT3g11530/F24K9_21 [Arabidopsis thaliana] gb|AAM19989.1| AT3g11530/F24K9_21 [Ara
JMFN033N23Sequence595008283 (4)gb|AAL25604.1|3e-73AT3g11530/F24K9_21 [Arabidopsis thaliana] gb|AAM19989.1| AT3g11530/F24K9_21 [Ara

Alignment

This contig is upended


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rJMFF036O14-                                          ATGATGTACAAGTGACCTGAGTGGAACA
                      ____________________________________________________________
consensus                                             ATGATGTACAAGTGACCTGAGTGGAACA
 
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rJMFF036O14-          TTCAGCACAGGTATGAGGTATCAGAATCTGAGTGTCGGACGAGGAACACAGACACAACAT
                      ____________________________________________________________
consensus             TTCAGCACAGGTATGAGGTATCAGAATCTGAGTGTCGGACGAGGAACACAGACACAACAT
 
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JMFN033N23+           GCTTAATTGCTTAGAATTTTATACACAAACTGAAATTTCTCATTTTCTTCTCCGAAGATC
JMFN006N01+           GCTTAATTGCTTAGAATTTTATACACAAACTGAAATTTCTCATTTTCTTCTCCGAAGATC
rJMFF036O14-          GCTTAATTGCTTAGAATTTTATACACAAACTGAAATTTCTCATTTTCTTCTCCGAAGATC
                      ____________________________________________________________
consensus             GCTTAATTGCTTAGAATTTTATACACAAACTGAAATTTCTCATTTTCTTCTCCGAAGATC
 
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JMFN033N23+           CCAAATTCACAGTTCCGGTTAGCCACTTAACCCTAATGTTTACACAGAAAATGCTTACAC
JMFN006N01+           CCAAATTCACAGTTCCGGTTAACCACTTAACCCTAATGTTTACACAGAAAATGCTTACAC
JMFF036O14+                                             AATGTTTACACAGAAAATGCTTACAC
rJMFF036O14-          CCAAATTCACAGTTCCGGTTAACCACTTAACCCTAATGTTTACACAGAAAATGCTTACAC
                      ____________________________________________________________
consensus             CCAAATTCACAGTTCCGGTTAACCACTTAACCCTAATGTTTACACAGAAAATGCTTACAC
 
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JMFN033N23+           CGAGGGCAACGGTTTTTCACCATTCGTCGTCTAGGCTGGCGTGGTGAAAGCACAAGACGG
JMFN006N01+           CGAGGGCAACGGTTTTTCACCATTCGTCGTCTAGGCTGGCGTGGTGAAAGCACAAGACGG
JMFF036O14+           CGAGGGCAACGGTTTTTCACCATTCGTCGTCTAGGCTGGCGTGGTGAAAGCACAAGACGG
rJMFF036O14-          CGAGGGCAACGGTTTTTCACCATTCGTCGTCTAGGCTGGCGTGGTGAAAGCACAAGACGG
                      ____________________________________________________________
consensus             CGAGGGCAACGGTTTTTCACCATTCGTCGTCTAGGCTGGCGTGGTGAAAGCACAAGACGG
 
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JMFN033N23+           TGCAGACGAATATGAAGAACGAGGTGAACTCGATGAACATGGCCCCTGTCCCGATCAGAT
JMFN006N01+           TGCAGACGAATATGAAGAACGAGGTGAACTCGATGAACATGGCCCCTGTCCCGATCAGAT
JMFF036O14+           TGCAGACGAATATGAAGAACGAGGTGAACTCGATGAACATGGCCCCTGTCCCGATCAGAT
rJMFF036O14-          TGCAGACGAATATGAAGAACGAGGTGAACTCGATGAACATGGCCCCTGTCCCGATCAGAT
                      ____________________________________________________________
consensus             TGCAGACGAATATGAAGAACGAGGTGAACTCGATGAACATGGCCCCTGTCCCGATCAGAT
 
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JMFN033N23+           CTGCGTGTCTCAGAATGATGGGGATGGCAATGCTCCCGACTGCAGATGCCCCGGTTAGGA
JMFN006N01+           CTGCGTGTCTCAGAATGATGGGGATGGCAATGCTCCCGACTGCAGATGCCCCGGTTAGGA
JMFF036O14+           CTGCGTGTCTCAGAATGATGGGGATGGCAATGCTCCCGACTGCAGATGCCCCGGTTAGGA
rJMFF036O14-          CTGCGTGTCTCAGAATGATGGGGATGGCAATGCTCCCGACTGCAGATGCCCCGGTTAGGA
                      ____________________________________________________________
consensus             CTGCGTGTCTCAGAATGATGGGGATGGCAATGCTCCCGACTGCAGATGCCCCGGTTAGGA
 
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JMFN033N23+           ATTTCGCAGCGTCAATCCAGCCGCCACCATCTCGACTGATTAAGAATTGAGTGGAACCAC
JMFN006N01+           ATTTCGCAGCGTCAATCCAGCCGCCACCATCTCGACTGATTAAGAATTGAGTGGAACCAC
JMFF036O14+           ATTTCGCAGCGTCAATCCAGCCGCCACCATCTCGACTGATTAAGAATTGAGTGGAACCAC
rJMFF036O14-          ATTTCGCAGCGTCAATCCAGCCGCCACCATCTCGACTGATTAAGAATTGAGTGGAACCAC
                      ____________________________________________________________
consensus             ATTTCGCAGCGTCAATCCAGCCGCCACCATCTCGACTGATTAAGAATTGAGTGGAACCAC
 
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JMFN033N23+           CGCCAAAGAACATACAAGGCATGGGGACCACGACATACATAAGAGCTGATAACATCGGCC
JMFN006N01+           CGCCAAAGAACATACAAGGCATGGGGACCACGACATACATAAGAGCTGATAACATCGGCC
JMFF036O14+           CGCCAAAGAACATACAAGGCATGGGGACCACGACATACATAAGAGCTGATAACATCGGCC
rJMFF036O14-          CGCCAAAGAACATACAAGGCATGGGGACCACGACATACATAAGAGCTGATAACATCGGCC
                      ____________________________________________________________
consensus             CGCCAAAGAACATACAAGGCATGGGGACCACGACATACATAAGAGCTGATAACATCGGCC
 
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JMFN033N23+           ACCAATTGTTGTATAATGCACAAGCCAGGATCTGTAGCAGGATGCTCGTGGAAAACATGA
JMFN006N01+           ACCAATTGTTGTATAATGCACAAGCCAGGATCTGTAGCAGGATGCTCGTGGAAAACATGA
JMFF036O14+           ACCAATTGTTGTATAATGCACAAGCCAGGATCTGTAGCAGGATGCTCGTGGAAAACATGA
rJMFF036O14-          ACCAATTGTTGTATAATGCACAAGCCAGGATCTGTAGCAGGATGCTCGTGGAAAACATGA
                      ____________________________________________________________
consensus             ACCAATTGTTGTATAATGCACAAGCCAGGATCTGTAGCAGGATGCTCGTGGAAAACATGA
 
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JMFN033N23+           AGGCAAGCCCCATAAGCACTCCTACGGTCATCGCCATTCTCTTTGGAAGGACGGAGGGGC
JMFN006N01+           AGGCAAGCCCCATAAGCACTCCTACGGTCATCGCCATTCTCTTTGGAAGGACGGAGGGGC
JMFF036O14+           AGGCAAGCCCCATAAGCACTCCTACGGTCATCGCCATTCTCTTTGGAAGGACGGAGGGGC
rJMFF036O14-          AGGCAAGCCCCATAAGCACTCCTACGGTCATCGCCATTCTCTTTGGAAGGACGGAGGGGC
                      ____________________________________________________________
consensus             AGGCAAGCCCCATAAGCACTCCTACGGTCATCGCCATTCTCTTTGGAAGGACGGAGGGGC
 
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JMFN033N23+           AAAGTTGGAATGAAATTTGTGATCGCTGATTTCCGATCCGACGTCTGAT           
JMFN006N01+           AAAGTTGGAATGAAATTTGTGATCGCTGATTTCCGATCCGA                   
JMFF036O14+           AAAGTTGGAATGAAATTTGTGATCGCTGATTTCCGATCCGACGTCTGATGAAGCATCCAG
rJMFF036O14-          AAAGTTGGAATGAAATTTGTGATCGCTGATTTCCGATCCGACGTCTGATGAAGCATCCAG
                      ____________________________________________________________
consensus             AAAGTTGGAATGAAATTTGTGATCGCTGATTTCCGATCCGACGTCTGATGAAGCATCCAG