Contig 008281:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036L18Sequence574003231 (2)ref|XP_009631399.1|5e-27PREDICTED: vacuolar protein-sorting protein bro1-like [Nicotiana tomentosiformi629008281 (2)
JMSF009F20Sequence387003231 (2)ref|XP_009631399.1|6e-06PREDICTED: vacuolar protein-sorting protein bro1-like [Nicotiana tomentosiformi697008281 (2)ref|XP_004249109.1|2e-05PREDICTED: vacuolar protein-sorting protein bro1-like [Solanum lycopersicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+                         ACACTTACATAAGATTCATCAAGTCAAGCCTCCCGCTTGTCCTTT
                      ____________________________________________________________
consensus                            ACACTTACATAAGATTCATCAAGTCAAGCCTCCCGCTTGTCCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          TGGCCCAAAGGGGAGGCCTCCGAGTAAAACACATAAACAAAATCATATGGCACCTCCNGT
rJMFF036L18+                                         CATAAACAAAATCATATGGCCCCTCCAGT
                      ____________________________________________________________
consensus             TGGCCCAAAGGGGAGGCCTCCGAGTAAAACACATAAACAAAATCATATGGCCCCTCCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          ATATGCACCAAATGCTGCTCCCGCTTCCTCATTGAAACCACATGGAGAGGCTCCAGCACC
rJMFF036L18+          ATATGCACCAAATGCTGCTCCCGCTTCCTCATTGAAACCACATGGAGAGGCTCCAGCACC
                      ____________________________________________________________
consensus             ATATGCACCAAATGCTGCTCCCGCTTCCTCATTGAAACCACATGGAGAGGCTCCAGCACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          TAGCCCACATGAAGTTCCTACACCGAGCCCNCTGCCAAATGTAGTTAATACCCGTGTTCA
rJMFF036L18+          TAGCCCNCATGAAGTTCCTACACCGAGCCCNCTGCCAAANGTAGTTAATACCCGTGTTCA
                      ____________________________________________________________
consensus             TAGCCCACATGAAGTTCCTACACCGAGCCCNCTGCCAAATGTAGTTAATACCCGTGTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          TCCCCCGTCAGGAAGTAATTNTGATGCAGAGCCTCCTGACAAATTGCGTTTAGTTTCGCA
rJMFF036L18+          TCCCCCGTCAGGAAGTAATTTTGATGCAGAGCCTCCTGACAAATTGCGTTTAGTTTCGCA
                      ____________________________________________________________
consensus             TCCCCCGTCAGGAAGTAATTTTGATGCAGAGCCTCCTGACAAATTGCGTTTAGTTTCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          CATCCCATCATCAGCATCCACAGTTCTTTATTCAAATTTATGGGCTCTTCCTCCATTTNT
rJMFF036L18+          CATCCCATCATCAGCATCCACAGTTTTTTATTCAAATTTATGGGCTNTTCCTCCATTTTT
                      ____________________________________________________________
consensus             CATCCCATCATCAGCATCCACAGTTTTTTATTCAAATTTATGGGCTCTTCCTCCATTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          ACTTGCNCTACATCTATAGCAGCGGAAAGAGAAGCAAAAAATTTTTTTTTTTCCAACAAA
rJMFF036L18+          ACTTGCACTACATNTATAGCAGCGGAAAGAGAAGCAAAAAATTTTTTTTTTTCCAACAAA
                      ____________________________________________________________
consensus             ACTTGCACTACATCTATAGCAGCGGAAAGAGAAGCAAAAAATTTTTTTTTTTCCAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          TTCACCTCCTATATTCGGGGAAGGAGTTCAGTACAACACAATGGAGGAAATTTGAAGGCA
rJMFF036L18+          TTCACCTCCTATATTCGGGGAAGGAGTTCAGTACAACACAATGGAGGAAATTTGAAGGCA
                      ____________________________________________________________
consensus             TTCACCTCCTATATTCGGGGAAGGAGTTCAGTACAACACAATGGAGGAAATTTGAAGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          ATGTGAGAGCGATGATGCGGCATGCCCCTCAGCTCACTTTTGAGTAGATACCATATATAT
rJMFF036L18+          ATGTGAGAGCGATGATGCGGCATGCCCCTCAGCTCACTTTTGAGTAGATACCATATATAT
                      ____________________________________________________________
consensus             ATGTGAGAGCGATGATGCGGCATGCCCCTCAGCTCACTTTTGAGTAGATACCATATATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          ATATATGTATTTTGTGCGTGTAAATATGTGATAAAACTTAAGGTGGTAGATGGATTTTCA
rJMFF036L18+          ATATATGTATTTTGTGCGTGTAAATATGTGATAAAACTTAAGGTGGTAGATGGATTTTCA
                      ____________________________________________________________
consensus             ATATATGTATTTTGTGCGTGTAAATATGTGATAAAACTTAAGGTGGTAGATGGATTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          GGTCAAAGTCACAGAGGTGACGGGCCTGACATGACATGCATTGTTAATTGTTATGTATGA
rJMFF036L18+          GGTCAAAGTCACAGAGGTGACGGGCCTGACATGACATGCATTGTTAATTGTTATGTATGA
                      ____________________________________________________________
consensus             GGTCAAAGTCACAGAGGTGACGGGCCTGACATGACATGCATTGTTAATTGTTATGTATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009F20+          TCTGTCTTCTACGTAAGATGTAAGGAGGGAATGAAATGAAACTAGCAAATGT        
rJMFF036L18+          TCTGTCTTCTACGTAAGATGTAAGGAGGGAATGAAATGAAACTAGCAAATGTATAAAACT
                      ____________________________________________________________
consensus             TCTGTCTTCTACGTAAGATGTAAGGAGGGAATGAAATGAAACTAGCAAATGTATAAAACT