Contig 008259:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031P02Sequence586003544 (3)ref|XP_009803512.1|140PREDICTED: uncharacterized protein LOC104248863 [Nicotiana sylvestris]366008259 (3)
JMSF006C03Sequence155008259 (3)
JMSF013H04Sequence264003544 (3)119008259 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF031P02+ AACNGG
                      ____________________________________________________________
consensus AACNGG
 
. : . : . : . : . : . :
rJMFF031P02+ NCCNTTGGGTTTTGNTTTTTCCCTNCCNANNCCCGTAANTNNTTTGGNNGCCCTTTTTNG
                      ____________________________________________________________
consensus NCCNTTGGGTTTTGNTTTTTCCCTNCCNANNCCCGTAANTNNTTTGGNNGCCCTTTTTNG
 
. : . : . : . : . : . :
rJMSF013H04+ TAAGGNAAA
rJMSF006C03+ AAGGGAAA
rJMFF031P02+ AAGCNGNAAAAAAAGTTCNGNNTTTNTTTTTTTTAANGNTCCCTNTTTGNNTAAGGNAAA
                      ____________________________________________________________
consensus AAGCNGNAAAAAAAGTTCNGNNTTTNTTTTTTTTAANGNTCCCTNTTTGNNTAAGGGAAA
 
. : . : . : . : . : . :
rJMSF013H04+ AAAAAAAAGGAAATTAATTTAGTTACTAGTAAATCTGATTGTGTTGAGTGTGTGAAAGGA
rJMSF006C03+ AAAAAAAAGGAANTTAATTTAGTTACTAGTANATCTNATTGTGTTGAGTGTNNGAAAGGA
rJMFF031P02+ AAAAAAAAGGAAATTAATTTAGTTACTAGTAAATCTGATTGTGTTGAGTGTGTGAAAGGA
                      ____________________________________________________________
consensus AAAAAAAAGGAAATTAATTTAGTTACTAGTAAATCTGATTGTGTTGAGTGTGTGAAAGGA
 
. : . : . : . : . : . :
rJMSF013H04+ GTAGGAATATCTGTTCTAGATTATTTGTTT
rJMSF006C03+ GTAGGAANATCTGTTCTCGATTATNTGTTTATTTCTTGTCTATAATTGTTTTGGGG
rJMFF031P02+ GTAGGAATATCTGTTCTAGATTATTTGTTTATTTCTTGTCTATAATTGTTTTGGGGACAG
                      ____________________________________________________________
consensus GTAGGAATATCTGTTCTAGATTATTTGTTTATTTCTTGTCTATAATTGTTTTGGGGACAG
 
. : . : . : . : . : . :
rJMFF031P02+ GAGAGGACAGGACAGCTATTTCCAGTTAATTTTTTGCTGCTACTTAGTCCTTGTTTTAGT
                      ____________________________________________________________
consensus GAGAGGACAGGACAGCTATTTCCAGTTAATTTTTTGCTGCTACTTAGTCCTTGTTTTAGT
 
. : . : . : . : . : . :
rJMFF031P02+ GTTAATTTATGTGGTTGTTCTGGAAGTAGTAGAACCAAGAACTAGGTTGTTTTTGAGCTT
                      ____________________________________________________________
consensus GTTAATTTATGTGGTTGTTCTGGAAGTAGTAGAACCAAGAACTAGGTTGTTTTTGAGCTT