Contig 008256:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C07Sequence528008256 (4)ref|XP_008229835.1|1e-68PREDICTED: eukaryotic translation initiation factor 1A [Prunus mume]669008256 (4)gb|KHG13840.1|8e-64Eukaryotic translation initiation factor 1A [Gossypium arboreum]
JMFF030K03Sequence444008256 (4)gb|KHG13840.1|9e-40Eukaryotic translation initiation factor 1A [Gossypium arboreum]802008256 (4)gb|KHG13840.1|6e-63Eukaryotic translation initiation factor 1A [Gossypium arboreum]

Alignment

This contig is upended


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rJMFF030K03-                                                AAGAGTTAATATTATTCCATCC
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consensus                                                   AAGAGTTAATATTATTCCATCC
 
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rJMFF030K03-          ATTTGATCAAAAGCACAAAACTTCATACATGAAACCCAATGCACAAGGCTTCATTGTATC
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consensus             ATTTGATCAAAAGCACAAAACTTCATACATGAAACCCAATGCACAAGGCTTCATTGTATC
 
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rJMFF030K03-          ACTTAAAACGTTACAAATAAGTTCTCCCCTCTCTACTTAAAGTGACATGAAACTCCACAG
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consensus             ACTTAAAACGTTACAAATAAGTTCTCCCCTCTCTACTTAAAGTGACATGAAACTCCACAG
 
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rJMFF001C07-                                          ATCTTATCAATGTCCTCATCCTCAAACT
rJMFF030K03-          AGATATATAACTCAGGGGTTTCAACTTCCTATATCTTATCAATGTCCTCATCCTCAAACT
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consensus             AGATATATAACTCAGGGGTTTCAACTTCCTATATCTTATCAATGTCCTCATCCTCAAACT
 
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JMFF001C07+                                               CCAATCCACCAGCAATGCCCTCGT
rJMFF001C07-          CCAGATAATCATCAGCTGCACCCTCATCTTCTTCATCCAATCCACCAGCAATGCCCTCGT
rJMFF030K03-          CCAGATAATCATCAGCTGCACCCTCATCTTCTTCATCCGATCCACCAGCAATGCCCTCGT
                      ____________________________________________________________
consensus             CCAGATAATCATCAGCTGCACCCTCATCTTCTTCATCCAATCCACCAGCAATGCCCTCGT
 
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JMFF001C07+           TGAGCCTCGTGTTCTCAGGCAACTCTCCATATGCCTTCAACAACCTCGCCTCATCTGGCA
rJMFF001C07-          TGAGCCTCGTGTTCTCAGGCAACTCTCCATATGCCTTCAACAACCTCGCCTCATCTGGCA
rJMFF030K03-          TGAGCCTCGTGTTCTCAGGCAACTCTCCATATGCCTTCAACAACCTCGCCTCATCTGGCA
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consensus             TGAGCCTCGTGTTCTCAGGCAACTCTCCATATGCCTTCAACAACCTCGCCTCATCTGGCA
 
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JMFF001C07+           TGTACTTCAGAATAACATCAGCCTTATCATCCTGATAATCACGGAGGCCGACGAGGATGA
rJMFF001C07-          TGTACTTCAGAATAACATCAGCCTTATCATCCTGATAATCACGGAGGCCGACGAGGATGA
JMFF030K03+                                             ATAATCACGGAGGCCGACGAGGATGA
rJMFF030K03-          TGTACTTCAGAATAACATCAGCCTTATCATCCTGATAATCACGGAGGCCGACGAGGATGA
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consensus             TGTACTTCAGAATAACATCAGCCTTATCATCCTGATAATCACGGAGGCCGACGAGGATGA
 
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JMFF001C07+           TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
rJMFF001C07-          TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
JMFF030K03+           TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
rJMFF030K03-          TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
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consensus             TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
 
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JMFF001C07+           TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
rJMFF001C07-          TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
JMFF030K03+           TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
rJMFF030K03-          TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
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consensus             TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
 
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JMFF001C07+           CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
rJMFF001C07-          CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
JMFF030K03+           CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
rJMFF030K03-          CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
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consensus             CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
 
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JMFF001C07+           TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGATG
rJMFF001C07-          TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGATG
JMFF030K03+           TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGACG
rJMFF030K03-          TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGACG
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consensus             TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGATG
 
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JMFF001C07+           CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
rJMFF001C07-          CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
JMFF030K03+           CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
rJMFF030K03-          CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
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consensus             CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
 
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JMFF001C07+           GCGGGTTGGATTTTTATTCTGCCCTTTTTCCTTTCTCAATAAGGATAAGGAATCGTAATT
JMFF030K03+           GCGGGTTGGATTTTTATTCTGCCCTTTTTCCTTTCTCAATAAGGATAAGGAATCGTAATT
rJMFF030K03-          GCGGGTTGGATTTTTATTCTGCCCTTTTTCCTTTCTCAATAAGGATAAGGAATCGTAATT
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consensus             GCGGGTTGGATTTTTATTCTGCCCTTTTTCCTTTCTCAATAAGGATAAGGAATCGTAATT
 
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JMFF001C07+           ACGGGCGG                                                    
JMFF030K03+           ACGGGCGG--TTTGGGTTTTGATTCTGCCCTATTTCCTTTCTCAACAAGGATAAGGAATC
rJMFF030K03-          ACNGGCGGGNTTGGGGTTTTGATTCTGCCCTATTTCCTTTCTCAACAAGGATAANGAATC
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consensus             ACGGGCGGGNTTTGGGTTTTGATTCTGCCCTATTTCCTTTCTCAACAAGGATAAGGAATC