Contig 008256:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C07Sequence528008256 (4)ref|XP_008229835.1|1e-68PREDICTED: eukaryotic translation initiation factor 1A [Prunus mume]669008256 (4)gb|KHG13840.1|8e-64Eukaryotic translation initiation factor 1A [Gossypium arboreum]
JMFF030K03Sequence444008256 (4)gb|KHG13840.1|9e-40Eukaryotic translation initiation factor 1A [Gossypium arboreum]802008256 (4)gb|KHG13840.1|6e-63Eukaryotic translation initiation factor 1A [Gossypium arboreum]

Alignment

This contig is upended


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rJMFF030K03- AAGAGTTAATATTATTCCATCC
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consensus AAGAGTTAATATTATTCCATCC
 
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rJMFF030K03- ATTTGATCAAAAGCACAAAACTTCATACATGAAACCCAATGCACAAGGCTTCATTGTATC
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consensus ATTTGATCAAAAGCACAAAACTTCATACATGAAACCCAATGCACAAGGCTTCATTGTATC
 
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rJMFF030K03- ACTTAAAACGTTACAAATAAGTTCTCCCCTCTCTACTTAAAGTGACATGAAACTCCACAG
                      ____________________________________________________________
consensus ACTTAAAACGTTACAAATAAGTTCTCCCCTCTCTACTTAAAGTGACATGAAACTCCACAG
 
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rJMFF001C07- ATCTTATCAATGTCCTCATCCTCAAACT
rJMFF030K03- AGATATATAACTCAGGGGTTTCAACTTCCTATATCTTATCAATGTCCTCATCCTCAAACT
                      ____________________________________________________________
consensus AGATATATAACTCAGGGGTTTCAACTTCCTATATCTTATCAATGTCCTCATCCTCAAACT
 
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JMFF001C07+ CCAATCCACCAGCAATGCCCTCGT
rJMFF001C07- CCAGATAATCATCAGCTGCACCCTCATCTTCTTCATCCAATCCACCAGCAATGCCCTCGT
rJMFF030K03- CCAGATAATCATCAGCTGCACCCTCATCTTCTTCATCCGATCCACCAGCAATGCCCTCGT
                      ____________________________________________________________
consensus CCAGATAATCATCAGCTGCACCCTCATCTTCTTCATCCAATCCACCAGCAATGCCCTCGT
 
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JMFF001C07+ TGAGCCTCGTGTTCTCAGGCAACTCTCCATATGCCTTCAACAACCTCGCCTCATCTGGCA
rJMFF001C07- TGAGCCTCGTGTTCTCAGGCAACTCTCCATATGCCTTCAACAACCTCGCCTCATCTGGCA
rJMFF030K03- TGAGCCTCGTGTTCTCAGGCAACTCTCCATATGCCTTCAACAACCTCGCCTCATCTGGCA
                      ____________________________________________________________
consensus TGAGCCTCGTGTTCTCAGGCAACTCTCCATATGCCTTCAACAACCTCGCCTCATCTGGCA
 
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JMFF001C07+ TGTACTTCAGAATAACATCAGCCTTATCATCCTGATAATCACGGAGGCCGACGAGGATGA
rJMFF001C07- TGTACTTCAGAATAACATCAGCCTTATCATCCTGATAATCACGGAGGCCGACGAGGATGA
JMFF030K03+ ATAATCACGGAGGCCGACGAGGATGA
rJMFF030K03- TGTACTTCAGAATAACATCAGCCTTATCATCCTGATAATCACGGAGGCCGACGAGGATGA
                      ____________________________________________________________
consensus TGTACTTCAGAATAACATCAGCCTTATCATCCTGATAATCACGGAGGCCGACGAGGATGA
 
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JMFF001C07+ TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
rJMFF001C07- TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
JMFF030K03+ TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
rJMFF030K03- TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
                      ____________________________________________________________
consensus TGTCGCCGGCGGCGATCCAAACCTTCTTGTGCATCTTGCCACGGATGTGACAGAGGCGCT
 
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JMFF001C07+ TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
rJMFF001C07- TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
JMFF030K03+ TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
rJMFF030K03- TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
                      ____________________________________________________________
consensus TGGTGCCGTCGATGCACATGGCCTCACAGCGGCCATTTCCGAGCATACGGAGGACCTGAG
 
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JMFF001C07+ CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
rJMFF001C07- CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
JMFF030K03+ CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
rJMFF030K03- CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
                      ____________________________________________________________
consensus CGTATTCCTGCCCGTCCTCCTTGAAAACAAGCTCTCTCTTCTCGTCGTCAGCCTCGTTCT
 
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JMFF001C07+ TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGATG
rJMFF001C07- TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGATG
JMFF030K03+ TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGACG
rJMFF030K03- TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGACG
                      ____________________________________________________________
consensus TCCCTCTCTTTCTGTTCTTGCCTCCCTTTCCCTTGTTCTTCGGCATGATAACACTCGATG
 
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JMFF001C07+ CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
rJMFF001C07- CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
JMFF030K03+ CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
rJMFF030K03- CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
                      ____________________________________________________________
consensus CAAGCAACACCCAATTCCAATTCCCAGAAATCAGCAAGTTTCGATTTTGATAAATTACGG
 
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JMFF001C07+ GCGGGTTGGATTTTTATTCTGCCCTTTTTCCTTTCTCAATAAGGATAAGGAATCGTAATT
JMFF030K03+ GCGGGTTGGATTTTTATTCTGCCCTTTTTCCTTTCTCAATAAGGATAAGGAATCGTAATT
rJMFF030K03- GCGGGTTGGATTTTTATTCTGCCCTTTTTCCTTTCTCAATAAGGATAAGGAATCGTAATT
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consensus GCGGGTTGGATTTTTATTCTGCCCTTTTTCCTTTCTCAATAAGGATAAGGAATCGTAATT
 
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JMFF001C07+ ACGGGCGG
JMFF030K03+ ACGGGCGG--TTTGGGTTTTGATTCTGCCCTATTTCCTTTCTCAACAAGGATAAGGAATC
rJMFF030K03- ACNGGCGGGNTTGGGGTTTTGATTCTGCCCTATTTCCTTTCTCAACAAGGATAANGAATC
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consensus ACGGGCGGGNTTTGGGTTTTGATTCTGCCCTATTTCCTTTCTCAACAAGGATAAGGAATC