Contig 008254:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029P22Sequence490011567 (2)emb|CCG20371.1|4e-53Ran GTPase activating protein 2 [Solanum tuberosum]735008254 (2)ref|XP_011090753.1|1e-59PREDICTED: RAN GTPase-activating protein 2-like isoform X1 [Sesamum indicum]
JMFF036O08Sequence579011567 (2)emb|CCG20371.1|2e-60Ran GTPase activating protein 2 [Solanum tuberosum]726008254 (2)ref|XP_011090754.1|6e-57PREDICTED: RAN GTPase-activating protein 2-like isoform X2 [Sesamum indicum] re

Alignment

This contig is upended


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rJMFF036O08+                                                               ATCGCAA
rJMFF029P22+                                                       AGGGAGCAATCGCAA
                      ____________________________________________________________
consensus                                                          AGGGAGCAATCGCAA
 
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rJMFF036O08+          TAGCCAATGCTCTCAAGGACTCGGCCCNTTCACTTAGAATCCTCGAGATGGCTGGGAACG
rJMFF029P22+          TAGCCAATGCTCTCAAGGACTCGGCCCCTTCACTTAGAATCCTCGAGATGGCTGGGAACG
                      ____________________________________________________________
consensus             TAGCCAATGCTCTCAAGGACTCGGCCCCTTCACTTAGAATCCTCGAGATGGCTGGGAACG
 
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rJMFF036O08+          ATATAACTGCCAAAGGTGCACCCGCTTTAGCTGCATGTATATCCGAAAAGAAGCTTCTCA
rJMFF029P22+          ATATAACTGCCAAAGGTGCACCCGCTTTAGCTGCATGTATATCCGAAAAGAAGCTTCTCA
                      ____________________________________________________________
consensus             ATATAACTGCCAAAGGTGCACCCGCTTTAGCTGCATGTATATCCGAAAAGAAGCTTCTCA
 
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rJMFF036O08+          CCAAGCTCAACCTGTCTGAGAATGAACTCAAGGATGATGGTGCGATCCAGATTGTGAAGG
rJMFF029P22+          CCAAGCTCAACCTGTCTGAGAATGAACTCAAGGATGATGGTGCGATCCAGATTGTGAAGG
                      ____________________________________________________________
consensus             CCAAGCTCAACCTGTCTGAGAATGAACTCAAGGATGATGGTGCGATCCAGATTGTGAAGG
 
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rJMFF036O08+          CTCTGGAAGAAGGTCACGATCAATTGAAAGTGGTTGATATGAGCAGTAACTCATTGAGAA
rJMFF029P22+          CTCTGGAAGAAGGTCACGATCAATTGAAAGTGGTTGATATGAGCAGTAACTCATTGAGAA
                      ____________________________________________________________
consensus             CTCTGGAAGAAGGTCACGATCAATTGAAAGTGGTTGATATGAGCAGTAACTCATTGAGAA
 
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rJMFF036O08+          GGGCTGGGGCTCGAGTGCTGGCTCAGACTCTGGTGCATAAACCCGAGTTTGAATCACTGA
rJMFF029P22+          GGGCTGGGGCTCGAGTGCTGGCTCAGACTCTGGTGCATAAACCCGAGTTTGAATCACTGA
                      ____________________________________________________________
consensus             GGGCTGGGGCTCGAGTGCTGGCTCAGACTCTGGTGCATAAACCCGAGTTTGAATCACTGA
 
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rJMFF036O08+          ATGTTAACGGGAATTTCATCTCCGATGAAGGCATTGATGAGTTGAAAGATATCTTCAAGA
rJMFF029P22+          ATGTTAACGGGAATTTCATCTCCGATGAAGGCATTGATGAGTTGAAAGATATCTTCAAGA
                      ____________________________________________________________
consensus             ATGTTAACGGGAATTTCATCTCCGATGAAGGCATTGATGAGTTGAAAGATATCTTCAAGA
 
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rJMFF036O08+          AATGCCCTGAAAAGCTTGCATCTTTGGAGGACAACGACCCCGAGGGCGAAGATGATGATG
rJMFF029P22+          AATGCCCTGAAAAGCTTGCATCTTTGGAGGACAACGACCCCGAGGGCGAAGATGATGATG
                      ____________________________________________________________
consensus             AATGCCCTGAAAAGCTTGCATCTTTGGAGGACAACGACCCCGAGGGCGAAGATGATGATG
 
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rJMFF036O08+          ATGAGAAGGAATCCGGGGATGAGGGTGATGACAATGAACTAGAATCAAAACTCAAAACCC
rJMFF029P22+          ATGAGAAGGAATCCGGGGATGAGGGTGATGACAATGAACTAGAATCAAAACTCAAAACCC
                      ____________________________________________________________
consensus             ATGAGAAGGAATCCGGGGATGAGGGTGATGACAATGAACTAGAATCAAAACTCAAAACCC
 
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rJMFF036O08+          TAGATGTCAACGAGGATGAGTAAATCCCCGCAAATATCAGGACCCTATCCCGACTCTCCA
rJMFF029P22+          TAGATGTCAACGAGGATGAGTAAATCCCCGCAAATATCAGGACCCTATCCCGACTCTCCA
                      ____________________________________________________________
consensus             TAGATGTCAACGAGGATGAGTAAATCCCCGCAAATATCAGGACCCTATCCCGACTCTCCA
 
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rJMFF036O08+          AGAAGCACTAATGCTAAGTTCCGTTGAGACGAGATGTTGTTTCCCTATCGTTAGCCTAGC
rJMFF029P22+          AGAAGCACTAATGCAAAGTTCCGTTGAGACGAGATGTTGTTTCCATATCGTTAGCCTAGC
                      ____________________________________________________________
consensus             AGAAGCACTAATGCTAAGTTCCGTTGAGACGAGATGTTGTTTCCCTATCGTTAGCCTAGC
 
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rJMFF036O08+          ATCTTAAAGTTTATGTAGCTGCTAGCAAAGATAAATTTTACCATTTCAATTTGTTTGTCA
rJMFF029P22+          ATCTTAAAGTTTATGTAGCTGCTAGCAAAGATAAATTTTACCATTTCAATTTGTTTGTCA
                      ____________________________________________________________
consensus             ATCTTAAAGTTTATGTAGCTGCTAGCAAAGATAAATTTTACCATTTCAATTTGTTTGTCA
 
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rJMFF036O08+          GATTTGTAGACTCATCATTTCTACCATTTCAATGTACTATTGCTTTTAGCTAAAGGCTT 
rJMFF029P22+          GATTTGTAGACTCATCATTTCTACCATTTCAATGTACTATTGCTTTTAGCTAAAGGCTTA
                      ____________________________________________________________
consensus             GATTTGTAGACTCATCATTTCTACCATTTCAATGTACTATTGCTTTTAGCTAAAGGCTTA